ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet96d11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAPU_DROME (Q24120) Protein cappuccino 30 3.9
2VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin li... 29 6.7
3YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein P... 29 6.7
4MPP2_MOUSE (Q9WV34) MAGUK p55 subfamily member 2 (MPP2 protein) ... 29 6.7

>CAPU_DROME (Q24120) Protein cappuccino|
          Length = 1059

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +3

Query: 3   LPPPPSGFEQITTLKLPAMAAKATSCFTFLKEALVLPTQNP 125
           LPPPP GF   TT  L +   K  + FT  K +    + NP
Sbjct: 135 LPPPPPGFGTPTTPLLSSNVLKKVASFTVEKSSAGNNSSNP 175



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>VIT_BOMMO (Q27309) Vitellogenin precursor [Contains: Vitellin light chain|
           (VL); Vitellin light chain rare isoform; Vitellin heavy
           chain rare isoform; Vitellin heavy chain (VH)]
          Length = 1782

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 174 VPAVNVVFIQPLTAEMLRHLAEMQTTDPSTAEFARLLQEIRQEA 305
           V A+  +FI   T EM++ +AEM   DPS    A L   I   A
Sbjct: 705 VAAIQSIFISHPTGEMMQAMAEMTHNDPSVEVRAVLKSAILSAA 748



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>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 24/103 (23%), Positives = 36/103 (34%)
 Frame = -1

Query: 367 LAKXXXXXXXXXXXXXXXXSLASCRISCKSLANSAVEGSVVCISARWRSISAVSGWMKTT 188
           L                  SLAS  I+  SLA+S++  S +  S+   S  A S    TT
Sbjct: 109 LTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTT 168

Query: 187 LTAGTGKAMAARRMKIGAKSLGFCVGRTSASLRKVKHEVALAA 59
               T  A ++      A +        S+SL       A ++
Sbjct: 169 SATPTSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSS 211



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>MPP2_MOUSE (Q9WV34) MAGUK p55 subfamily member 2 (MPP2 protein) (Dlgh2|
           protein)
          Length = 552

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 207 LTAEMLRHLAEMQTTDPSTAEFARLLQE 290
           L  E+LR LAE+     + AE AR+LQE
Sbjct: 70  LVQEILRDLAELAEQSSTAAELARILQE 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,134,829
Number of Sequences: 219361
Number of extensions: 471810
Number of successful extensions: 2208
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2207
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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