ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet96c12 |
|---|---|
| Clone Library Name | barley_pub |
>CAN3_MOUSE (Q64691) Calpain-3 (EC 3.4.22.-) (Calpain L3) (Calpain p94)| (Calcium-activated neutral proteinase 3) (CANP 3) (Muscle-specific calcium-activated neutral protease 3) Length = 821 Score = 31.2 bits (69), Expect = 1.7 Identities = 18/41 (43%), Positives = 20/41 (48%) Frame = +2 Query: 377 VRGRAGPGPMRQPDVPEPPGHDTTDACGGNPSGDDHAATSR 499 V R G P VP P TT+A GG+PSG A SR Sbjct: 9 VAPRTGAEPRSPGPVPHPAQGKTTEAGGGHPSGIYSAIISR 49
>LRP3_RAT (O88204) Low-density lipoprotein receptor-related protein 3| precursor (rLRp105) Length = 770 Score = 30.4 bits (67), Expect = 2.9 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +2 Query: 386 RAGPGPMRQPDVPEPPGHDTTDACGGNPSGDDHA 487 +A PGP+ P VP +A G PSG HA Sbjct: 641 QAAPGPVPDPPVPNTDTGSPREAGDGPPSGSGHA 674
>FOSB_HUMAN (P53539) Protein fosB (G0/G1 switch regulatory protein 3)| Length = 338 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = -2 Query: 441 SWPGGSGTSGWRIGPGPARPRTA 373 S GG TSG GPGPARP A Sbjct: 118 SGSGGPSTSGTTSGPGPARPARA 140
>FOSB_CANFA (Q9TUB3) Protein fosB| Length = 338 Score = 30.0 bits (66), Expect = 3.7 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = -2 Query: 441 SWPGGSGTSGWRIGPGPARPRTA 373 S GG TSG GPGPARP A Sbjct: 118 SGSGGPSTSGTTSGPGPARPARA 140
>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor| Length = 2213 Score = 29.6 bits (65), Expect = 4.9 Identities = 15/28 (53%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Frame = +2 Query: 386 RAGPGPMRQPDVPEPPGHDTTDA--CGG 463 R GP P R PE PG DT A CGG Sbjct: 43 RPGPEPSRPRAAPETPGGDTAGAGRCGG 70
>COBA1_HUMAN (P12107) Collagen alpha-1(XI) chain precursor| Length = 1806 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -2 Query: 474 PLGLPPQASVVSWPGGSGTSGWRIGPGPARPR 379 P+GL + V PG SG G PGP PR Sbjct: 533 PMGLTGRPGPVGGPGSSGAKGESGDPGPQGPR 564
>CAN3_RAT (P16259) Calpain-3 (EC 3.4.22.-) (Calpain L3) (Calpain p94)| (Calcium-activated neutral proteinase 3) (CANP 3) (Muscle-specific calcium-activated neutral protease 3) Length = 821 Score = 29.6 bits (65), Expect = 4.9 Identities = 17/41 (41%), Positives = 19/41 (46%) Frame = +2 Query: 377 VRGRAGPGPMRQPDVPEPPGHDTTDACGGNPSGDDHAATSR 499 V R G P VP P TT+A GG+P G A SR Sbjct: 9 VAPRTGAEPRSPGPVPHPAQGKTTEAGGGHPGGIYSAIISR 49
>CAN3_HUMAN (P20807) Calpain-3 (EC 3.4.22.-) (Calpain L3) (Calpain p94)| (Calcium-activated neutral proteinase 3) (CANP 3) (Muscle-specific calcium-activated neutral protease 3) (nCL-1) Length = 821 Score = 29.6 bits (65), Expect = 4.9 Identities = 17/42 (40%), Positives = 19/42 (45%) Frame = +2 Query: 374 AVRGRAGPGPMRQPDVPEPPGHDTTDACGGNPSGDDHAATSR 499 +V R P VP P T+A GGNPSG A SR Sbjct: 8 SVAPRTAAEPRSPGPVPHPAQSKATEAGGGNPSGIYSAIISR 49
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 29.6 bits (65), Expect = 4.9 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -2 Query: 474 PLGLPPQASVVSWPGGSGTSGWRIGPGPARPR 379 P+GL + V PG SG G PGP PR Sbjct: 300 PMGLTGRPGPVGGPGSSGAKGEMGDPGPQGPR 331
>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor| Length = 674 Score = 29.3 bits (64), Expect = 6.4 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +2 Query: 383 GRAGPGPMRQPDVPEPPGHDTTDACG 460 G PGP QP +P PPG T G Sbjct: 84 GTGSPGPQGQPGLPGPPGPSATGKPG 109
>PLS1_RAT (P58195) Phospholipid scramblase 1 (PL scramblase 1)| (Ca(2+)-dependent phospholipid scramblase 1) Length = 335 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +2 Query: 383 GRAGPGPMRQPDVPEPPGHDTTDACGGNPSG 475 G GP P QP P PPG GG+PSG Sbjct: 56 GPQGPYPGPQPGYPVPPG----SYAGGDPSG 82
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 28.9 bits (63), Expect = 8.3 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%) Frame = +2 Query: 377 VRGRAGP----GPMRQPDVPEPPGHDTTDACGGNPSG 475 +RG AGP GP P P PPG G+P G Sbjct: 831 LRGEAGPPGAAGPQGGPGAPGPPGPQGVKGERGSPGG 867
>ZIC5_HUMAN (Q96T25) Zinc finger protein ZIC 5 (Zinc finger protein of the| cerebellum 5) Length = 639 Score = 28.9 bits (63), Expect = 8.3 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%) Frame = +2 Query: 395 PGPMRQPDVPEPP---GHDTTDACGGNPSGDDHA 487 P P P P PP G+ TT++ GG SG H+ Sbjct: 137 PSPPPPPPPPPPPALSGYTTTNSGGGGSSGKGHS 170
>CI041_RAT (Q5BJZ6) Protein C9orf41 homolog| Length = 400 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +2 Query: 74 GRLATCSPASPPVAGAYRREEGDERQ 151 GRL + +PA PPV G EE ER+ Sbjct: 30 GRLGSAAPAGPPVRGTAEDEERLERE 55
>DPEP2_HUMAN (Q9H4A9) Dipeptidase 2 precursor (EC 3.4.13.19)| Length = 486 Score = 28.9 bits (63), Expect = 8.3 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 129 ARRATSVNQTPNFLSRKPPRSGTNALLKKARRRNRNTDLLGSXXXXXXGYVVLYNVSIGA 308 ARRA V+Q P S R N+ RN D+L G VV+ ++S+G Sbjct: 267 ARRALEVSQAPVIFSHSAARGVCNS------ARNVPDDIL--QLLKKNGGVVMVSLSMGV 318 Query: 309 TEAQPN-DVSGVVDVLD 356 + P+ +VS V D D Sbjct: 319 IQCNPSANVSTVADHFD 335 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,341,010 Number of Sequences: 219361 Number of extensions: 918761 Number of successful extensions: 4733 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4716 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
