>ACP1_HORVU (P02902) Acyl carrier protein 1, chloroplast precursor (Acyl|
           carrier protein I) (ACP I)
          Length = 149

 Score =  165 bits (418), Expect = 4e-41
 Identities = 86/105 (81%), Positives = 86/105 (81%)
 Frame = +2

Query: 113 MAHCLAAVSSFSPSAVRRRLXXXXXXXXXXXXXXXXXXRQMSFVSISSRPSSLRFKICCV 292
           MAHCLAAVSSFSPSAVRRRL                  RQMSFVSISSRPSSLRFKICC 
Sbjct: 1   MAHCLAAVSSFSPSAVRRRLSSQVANVVSSRSSVSFHSRQMSFVSISSRPSSLRFKICCA 60

Query: 293 AMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           AMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL
Sbjct: 61  AMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 105

>ACP3_HORVU (P15543) Acyl carrier protein 3, chloroplast precursor (Acyl|
           carrier protein III) (ACP III)
          Length = 132

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = +2

Query: 257 RPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           +P  +RF +CC       AK++TV+KVC IVKKQLAVP+GT V   +KFS+LGADSL
Sbjct: 38  QPVPMRFAVCC------SAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSL 88

>ACP1_CASGL (P93092) Acyl carrier protein 1, chloroplast precursor (ACP 1)|
          Length = 136

 Score = 66.2 bits (160), Expect = 3e-11
 Identities = 35/57 (61%), Positives = 40/57 (70%)
 Frame = +2

Query: 257 RPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           R  S RF +CC A      K ETV+KVC IVKKQLA+PD + VT ESKF+ LGADSL
Sbjct: 42  RMRSARFVVCCAA------KPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSL 92

>ACP3_CUPLA (P52413) Acyl carrier protein 3, chloroplast precursor (ACP)|
          Length = 143

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 34/63 (53%), Positives = 42/63 (66%)
 Frame = +2

Query: 239 FVSISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGA 418
           F S+ S    L F++CC      QAK+ETV +VC IVKKQLA+P+ + V   SKFS LGA
Sbjct: 44  FPSLRSSRGPLSFRVCC------QAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGA 97

Query: 419 DSL 427
           DSL
Sbjct: 98  DSL 100

>ACP1_CUPLA (P52411) Acyl carrier protein 1, chloroplast precursor (ACP)|
          Length = 140

 Score = 62.4 bits (150), Expect = 4e-10
 Identities = 36/64 (56%), Positives = 41/64 (64%)
 Frame = +2

Query: 236 SFVSISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELG 415
           SF S+ S  SS   ++ C      QAK ETV KVC IVKKQLA+PD + V   SKFS LG
Sbjct: 39  SFPSLKSSKSSFALRVSC------QAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALG 92

Query: 416 ADSL 427
           ADSL
Sbjct: 93  ADSL 96

>ACP2_HORVU (P08817) Acyl carrier protein 2, chloroplast precursor (Acyl|
           carrier protein II) (ACP II)
          Length = 129

 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 33/62 (53%), Positives = 40/62 (64%)
 Frame = +2

Query: 242 VSISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGAD 421
           VS   +P   RF +CC A      KKETV+KVC IVK QLA+ D T V+  S F++LGAD
Sbjct: 33  VSFRLQPVPQRFSVCCAA------KKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGAD 86

Query: 422 SL 427
           SL
Sbjct: 87  SL 88

>ACP2_CUPLA (P52412) Acyl carrier protein 2, chloroplast precursor (ACP)|
          Length = 137

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 34/61 (55%), Positives = 39/61 (63%)
 Frame = +2

Query: 245 SISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADS 424
           S  SR  S   ++ C      QAK ETV KVC IVKKQLA+PD + V+  SKFS LGADS
Sbjct: 39  SFFSRRGSFSLRVNC------QAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADS 92

Query: 425 L 427
           L
Sbjct: 93  L 93

>ACP4_CUPLA (P52414) Acyl carrier protein 4, chloroplast precursor (ACP)|
          Length = 139

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 37/62 (59%), Positives = 39/62 (62%)
 Frame = +2

Query: 242 VSISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGAD 421
           VS  S PS LR      A    QAK ETV KVC IVKKQLA+PD + V   SKFS LGAD
Sbjct: 35  VSRKSFPS-LRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGAD 93

Query: 422 SL 427
           SL
Sbjct: 94  SL 95

>ACP2_ARATH (P25701) Acyl carrier protein 2, chloroplast precursor (ACP)|
          Length = 136

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = +2

Query: 236 SFVSISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELG 415
           S +S + R    R  + C A      K ETVDKVC +V+KQL++ +   +TA +KF+ LG
Sbjct: 35  SSLSFNLRQLPTRLTVSCAA------KPETVDKVCAVVRKQLSLKEADEITAATKFAALG 88

Query: 416 ADSL 427
           ADSL
Sbjct: 89  ADSL 92

>ACP1_SPIOL (P07854) Acyl carrier protein 1, chloroplast precursor (Acyl|
           carrier protein I) (ACP I)
          Length = 138

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 26/39 (66%), Positives = 33/39 (84%)
 Frame = +2

Query: 311 AKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           AKKET+DKVC IVK++LA+     VTA+S+FS+LGADSL
Sbjct: 57  AKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSL 95

>ACP_BRACM (P07088) Acyl carrier protein SF2, chloroplast precursor (ACP)|
          Length = 134

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 29/52 (55%), Positives = 35/52 (67%)
 Frame = +2

Query: 272 RFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           RF I C A      K ETV+KV  IVKKQL++ D   V AE+KF++LGADSL
Sbjct: 46  RFSISCAA------KPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSL 91

>ACP3_ARATH (P25702) Acyl carrier protein 3, chloroplast precursor (ACP)|
          Length = 136

 Score = 51.6 bits (122), Expect = 8e-07
 Identities = 28/64 (43%), Positives = 39/64 (60%)
 Frame = +2

Query: 236 SFVSISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELG 415
           S +S + R    R  + C A      K ETVDKVC +V+KQL++ +   +TA +KF+ LG
Sbjct: 35  SNLSFNLRQLPTRLTVYCAA------KPETVDKVCAVVRKQLSLKEADEITAATKFAALG 88

Query: 416 ADSL 427
           ADSL
Sbjct: 89  ADSL 92

>ACP5_BRANA (P08971) Acyl carrier protein, chloroplast precursor (ACP) (Clones|
           28F10, 10H11/11D11, 34F12 and 04F05/05E01)
          Length = 134

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 30/61 (49%), Positives = 38/61 (62%)
 Frame = +2

Query: 245 SISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADS 424
           ++S   S  R  I C A      K+ETV+KV  IVKKQL++ D   V AE+KF +LGADS
Sbjct: 37  NLSFNLSRTRLSISCAA------KQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADS 90

Query: 425 L 427
           L
Sbjct: 91  L 91

>ACP1_BRANA (P10352) Acyl carrier protein, chloroplast precursor (ACP) (ACP05)|
           (Clone 29C08)
          Length = 134

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 29/58 (50%), Positives = 36/58 (62%)
 Frame = +2

Query: 254 SRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           SR    R  + C A      K ETV+KV  IVKKQL++ D   V AE+KF++LGADSL
Sbjct: 40  SRSIPTRLSVSCAA------KPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADSL 91

>ACP3_BRANA (P32887) Acyl carrier protein, chloroplast precursor (ACP) (Clones|
           34C02 and 10C04)
          Length = 134

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 29/64 (45%), Positives = 40/64 (62%)
 Frame = +2

Query: 236 SFVSISSRPSSLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELG 415
           + VS ++   +LR  I         AK ET++KV  IVKKQL++ D   V AE+KF++LG
Sbjct: 28  ALVSRTNLSFNLRRSIPTRLSVSCAAKPETIEKVSKIVKKQLSLKDDQKVVAETKFADLG 87

Query: 416 ADSL 427
           ADSL
Sbjct: 88  ADSL 91

>ACP2_BRANA (P17650) Acyl carrier protein, chloroplast precursor (ACP) (ACP09)|
           (Clone 22C01)
          Length = 134

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 25/39 (64%), Positives = 31/39 (79%)
 Frame = +2

Query: 311 AKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           AK ETV+KV  IVKKQL++ D   V AE+KF++LGADSL
Sbjct: 53  AKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSL 91

>ACP1_ARATH (P11829) Acyl carrier protein 1, chloroplast precursor (ACP)|
          Length = 137

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 26/54 (48%), Positives = 35/54 (64%)
 Frame = +2

Query: 266 SLRFKICCVAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           S R  + C A      K+ET++KV  IVKKQL++     V AE+KF++LGADSL
Sbjct: 47  SRRLSVSCAA------KQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADSL 94

>ACP2_SPIOL (P23235) Acyl carrier protein 2, chloroplast precursor (Acyl|
           carrier protein II) (ACP II)
          Length = 130

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 24/39 (61%), Positives = 28/39 (71%)
 Frame = +2

Query: 311 AKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           AK E V KV  IVK QLA+ +   VT E+KFSE+GADSL
Sbjct: 50  AKPEMVTKVSDIVKSQLALAEDAKVTGETKFSEIGADSL 88

>CSW_DROME (P29349) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)|
          Length = 845

 Score = 33.1 bits (74), Expect = 0.28
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 1/122 (0%)
 Frame = -2

Query: 420 SAPSSENFDSAVTGVPSGTASCFLTIIQTLSTVSFLACASPMATQQILNRSELGLELMDT 241
           S  SS N     T + SGTA C + +++  S  S  A +  MA ++     E+    + T
Sbjct: 389 SGVSSVNGPGTPTNLTSGTAGCLVGLLKRHSNDSSGAVSISMAEREREREREMFKTYIAT 448

Query: 240 KLICRLWKXXXXXXXXXLATWLDSRRRTADGEKE-ETAARQCAMGWPAELLGRIWGRWEE 64
           +  C L +            W ++ R      KE E    +CA  WP E      GR E+
Sbjct: 449 Q-GCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDE------GRSEQ 501

Query: 63  AG 58
            G
Sbjct: 502 FG 503

>CSW_DROSI (Q8ISC9) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)|
           (Fragment)
          Length = 555

 Score = 32.3 bits (72), Expect = 0.48
 Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 1/122 (0%)
 Frame = -2

Query: 420 SAPSSENFDSAVTGVPSGTASCFLTIIQTLSTVSFLACASPMATQQILNRSELGLELMDT 241
           S  SS N     T + SGTA C   +++  S  S  A +  MA ++     E+    + T
Sbjct: 99  SGVSSVNGPGTPTNLTSGTAGCLAGLLKRHSNDSSGAVSISMAEREREREREMFKTYIAT 158

Query: 240 KLICRLWKXXXXXXXXXLATWLDSRRRTADGEKE-ETAARQCAMGWPAELLGRIWGRWEE 64
           +  C L +            W ++ R      KE E    +CA  WP E      GR E+
Sbjct: 159 Q-GCLLTQQVNTVTDFWNMVWQENTRVIVMTTKEYERGKEKCARYWPDE------GRSEQ 211

Query: 63  AG 58
            G
Sbjct: 212 FG 213

>RFX1_HUMAN (P22670) MHC class II regulatory factor RFX1 (RFX) (Enhancer factor|
           C) (EF-C)
          Length = 979

 Score = 31.6 bits (70), Expect = 0.81
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 70  PPPPNSTEQLSRPTHGALPRRRFLLLAVRRPPAAVQPGG*CSFEPELSFFP*PA 231
           PPPP + +    PT  A P+ +++       P A  PGG   +  EL   P P+
Sbjct: 32  PPPPAAPQPPQPPTAAATPQPQYVTELQSPQPQAQPPGGQKQYVTELPAVPAPS 85

>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 31  PSSAALHLPAGLFPPPPNSTEQLSRPT-HGALPRRRFLLLAVRRPPAAVQPGG 186
           P++ A   PA   PPPP +   L+RP  H A P      +    PPAA Q GG
Sbjct: 258 PAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP---PPAAAQNGG 307

>ACP_GRATL (Q6B8U3) Acyl carrier protein (ACP)|
          Length = 82

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 18/33 (54%), Positives = 22/33 (66%)
 Frame = +2

Query: 329 DKVCMIVKKQLAVPDGTPVTAESKFSELGADSL 427
           DKV  IV  QL V +   VT ++KF+ LGADSL
Sbjct: 7   DKVQNIVANQLGV-EKDKVTEDAKFAALGADSL 38

>EPN3_MOUSE (Q91W69) Epsin-3 (EPS-15-interacting protein 3)|
          Length = 636

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 28  LPSSAALHLPAGLFPPPPNSTEQLSRPTHGAL 123
           LP+S ++   AG F PPP S  Q   PT G +
Sbjct: 592 LPASVSVFPQAGAFAPPPASLPQPLLPTSGPM 623

>PDR6_YEAST (P32767) Pleiotropic drug resistance regulatory protein 6|
          Length = 1081

 Score = 28.5 bits (62), Expect = 6.9
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = +2

Query: 251 SSRPSSLRFKICC----VAMGEAQAKKETVDKV-CMIVKKQLAVPDGTPVTAESKFSEL 412
           SS P  +R KI C    V       K     ++ C+IV K L +PDG P   +   SE+
Sbjct: 794 SSDPLQIRSKIMCTIDKVLDNSIYCKNSAFVEIGCLIVGKGLNLPDGEPYFLKYNMSEV 852

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 25.0 bits (53), Expect(2) = 8.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 61  GLFPPPPNSTEQLSRPTHGALP 126
           G++PPPP S        HG +P
Sbjct: 361 GMYPPPPPSRPPAPPSGHGMIP 382



 Score = 21.6 bits (44), Expect(2) = 8.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 31  PSSAALHLPAGLFPPPP 81
           P    +  P G+ PPPP
Sbjct: 336 PPPPGMRYPGGMPPPPP 352

>APA_MYCAV (Q48919) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (FAP-A)
          Length = 381

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 16  RAKDLPSSAALHLPAGLFPPPPNSTEQLSRPTHGALPRRRFLLLAVRRPPAAVQPGG 186
           R + +P   A +  AG   P PN  +   RP     PRRR ++     PPA   P G
Sbjct: 58  RRRRIPGQPADNAQAGAPAPAPNGQQ---RP-----PRRRRMIPTRAPPPAGAPPNG 106

>ACP_GUITH (P29189) Acyl carrier protein (ACP)|
          Length = 81

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +2

Query: 314 KKETVDKVCMIVKKQLAVPDGTPVTAESKFS-ELGADSL 427
           ++E  +KV  I+ +QL V D + VT ++ F+ +LGADSL
Sbjct: 3   EQEIFEKVQTIISEQLGV-DKSQVTKDANFANDLGADSL 40

>UBXD3_MOUSE (Q8BG34) UBX domain-containing protein 3|
          Length = 277

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 8   AAPEPRT--SRAAQHSTYQPASSHRPQILPSSSAG--QPMAHCLAAVSSFSPSAV 160
           A PE  T  S A   ST+QP+S     I P S+ G  +P  H    +   SPSA+
Sbjct: 10  APPERSTVVSTAGDSSTWQPSSLRMHVIRPKSAKGRKRPNLHRPQGMGDGSPSAL 64


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,555,281
Number of Sequences: 219361
Number of extensions: 1174233
Number of successful extensions: 4329
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 4061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4318
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)