ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet95g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYTL1_HUMAN (Q8IYJ3) Synaptotagmin-like protein 1 (Exophilin-7) ... 30 2.9
2HSP71_LEIMA (P12076) Heat shock 70-related protein 1, mitochondr... 30 2.9
3RGS12_RAT (O08774) Regulator of G-protein signaling 12 (RGS12) 29 5.0
4GATA6_MOUSE (Q61169) Transcription factor GATA-6 (GATA-binding f... 28 8.6
5CP52T_CANMA (Q12585) Cytochrome P450 52D1 (EC 1.14.14.-) (CYPLII... 28 8.6

>SYTL1_HUMAN (Q8IYJ3) Synaptotagmin-like protein 1 (Exophilin-7) (JFC1 protein)|
           (SB146)
          Length = 562

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
 Frame = -3

Query: 352 PTRATSTHVAQVGLNGEEELAPLPSLAAVLXXXXXXXXXXXXXXXXGQ---SGEVEADGV 182
           P +A +   +Q+  NGEE   P PSL  +L                 Q   SG+ EA  V
Sbjct: 207 PQQAQTKAASQILENGEEAPGPDPSLDRMLSSSSSVSSLNSSTLSGSQMSLSGDAEAVQV 266

Query: 181 R---DVALHHGP 155
           R     ALH+ P
Sbjct: 267 RGSVHFALHYEP 278



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>HSP71_LEIMA (P12076) Heat shock 70-related protein 1, mitochondrial precursor|
          Length = 634

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = +2

Query: 236 NPYLQITISENSGERWKRSELFLAVEAYLSDVCARRARRLKAELGKDSKNIQVSVDDHEG 415
           N   Q+T +E     WK          Y+SD      + L AEL K  +N  V+ DD   
Sbjct: 557 NAETQLTTAERQLGEWK----------YVSDAEKENVKTLVAELRKAMENPNVAKDDLAA 606

Query: 416 VTDDFSGATL 445
            TD    A +
Sbjct: 607 ATDKLQKAVM 616



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>RGS12_RAT (O08774) Regulator of G-protein signaling 12 (RGS12)|
          Length = 1387

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = +2

Query: 230 YFNPYLQITISENSGERWKRSELFLAVEAYLSDVCARRARRLKAELGKDSKNIQVSVDDH 409
           YF+ +L+   SE +   W+  E F  V A+     + RAR + ++         V++D  
Sbjct: 728 YFSDFLRKEFSEENILFWQACECFSHVPAHDKKELSYRAREIFSKFLCSKATTPVNIDSQ 787

Query: 410 EGVTDDFSGA 439
             + DD   A
Sbjct: 788 AQLADDILNA 797



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>GATA6_MOUSE (Q61169) Transcription factor GATA-6 (GATA-binding factor 6)|
          Length = 444

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 7/35 (20%)
 Frame = -1

Query: 159 DHRKMVLATADP-------NHGHHPTIAPSMAGPL 76
           +H+   L+ A P       +H HHPT +P MA PL
Sbjct: 159 EHQYSSLSAARPLNGTYHHHHHHHPTYSPYMAAPL 193



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>CP52T_CANMA (Q12585) Cytochrome P450 52D1 (EC 1.14.14.-) (CYPLIID1)|
           (Alkane-inducible P450-ALK4)
          Length = 505

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/71 (29%), Positives = 28/71 (39%)
 Frame = +2

Query: 233 FNPYLQITISENSGERWKRSELFLAVEAYLSDVCARRARRLKAELGKDSKNIQVSVDDHE 412
           F P L   I  + GE WK S + L  +   S V      RL+       KNI    D++ 
Sbjct: 117 FEPLLGNGIFTSDGEPWKHSRIMLRPQFIKSQV--SHVNRLEPHFNLLQKNITAQTDNYF 174

Query: 413 GVTDDFSGATL 445
            +   F   TL
Sbjct: 175 DIQTLFFRFTL 185


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,703,574
Number of Sequences: 219361
Number of extensions: 903731
Number of successful extensions: 4753
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4668
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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