>TSJT1_TOBAC (P24805) Stem-specific protein TSJT1|
          Length = 149

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 32/91 (35%), Positives = 50/91 (54%)
 Frame = +1

Query: 154 GSRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAKDEIFCL 333
           G +    KTR  E+ + F      +    L +   +A+SH  E+ L PRS    D++FC+
Sbjct: 22  GIQKKEAKTR-EEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCI 80

Query: 334 FEGVLDNLGRLSQQYGLSKGSNEVLLVIEAY 426
           F G LDN   L + YGLS+ + E ++++EAY
Sbjct: 81  FSGALDNTFDLRKHYGLSRQATEAMIMVEAY 111

>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +3

Query: 336 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLXDA 434
           RGSPG+ G+A PA  P     RG+PG RGL  A
Sbjct: 387 RGSPGEAGSAGPAGPP---GLRGSPGSRGLPGA 416

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 18/33 (54%), Positives = 21/33 (63%)
 Frame = +3

Query: 336 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGLXDA 434
           RGSPG+ G+A PA  P     RG+PG RGL  A
Sbjct: 387 RGSPGEPGSAGPAGPP---GLRGSPGSRGLPGA 416

>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRGL 425
           GSPG++G A P+  P      G PGDRGL
Sbjct: 348 GSPGEMGEAGPSGEPGIPGDVGIPGDRGL 376

>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 422
           G+PG  G A P+  P     RGAPGDRG
Sbjct: 765 GAPGDKGEAGPSGPPGPTGARGAPGDRG 792

>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -2

Query: 433 ASCRPRSPGAPRCCPWRGRTAGSAAPSCPGLP 338
           A+ RP  PG P    W G      AP  PGLP
Sbjct: 107 ANGRPGEPGPPGAPGWDGCNGTDGAPGVPGLP 138

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRGL 425
           G PG LG A PA +  +  + G PG+RGL
Sbjct: 215 GPPGALGPAGPAGKDGESGRPGRPGERGL 243

>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 422
           G  G +GA  P+     G +RGAPGDRG
Sbjct: 490 GERGAVGATGPSGPAGPGGERGAPGDRG 517

>WFS1_MOUSE (P56695) Wolframin|
          Length = 890

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -2

Query: 421 PRSPGAPRCCPWRGRTAGSAAPSCPGLPRTGRR 323
           PR+P  P+  P  GR+AG AA   P  P+TG R
Sbjct: 41  PRAP-RPQADPSAGRSAGEAAAPEPRAPQTGSR 72

>DUSB_PASMU (Q9CLW3) tRNA-dihydrouridine synthase B (EC 1.-.-.-)|
          Length = 332

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 226 AVSVELGSLGNLAYSHVKESLLLPRSFAAKDEIFCLFEGVLDNLGRLSQQYGLSKG 393
           A+ +  GSLGN     V ESL+   S   +  +      +L ++  L Q YG+ KG
Sbjct: 220 AIMIGRGSLGNPWLFRVMESLIEKDSIVLEPSLNEKCNVILQHIQELHQFYGVEKG 275

>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +3

Query: 336 RGSPGQLGAAEPAVRPLQGQQRGAPGDRGL 425
           +G+PG++G     +  L+GQ RG PGD GL
Sbjct: 612 KGTPGEMGPPGLGLPGLKGQ-RGFPGDAGL 640

>Y2027_AQUAE (O67821) Hypothetical protein aq_2027|
          Length = 364

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = +1

Query: 274 VKESLLLP--RSFAAKDEIFCLFEGVLDNLGRLSQQYGLSKGSNEVLLVIEA 423
           VK  L LP  R+F  K E FCL    + NL   ++++G  +G+  +  ++EA
Sbjct: 214 VKGDLFLPTLRAFIEKGEPFCLTLFDIYNLLEFNRKHGWEEGNRVLKKLVEA 265

>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 422
           G PG  G   PA  P     RG PG+RG
Sbjct: 773 GPPGDKGETGPAGAPGPAGSRGGPGERG 800

>K1949_MOUSE (Q8BQ30) Protein KIAA1949 homolog|
          Length = 594

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -1

Query: 254 PSDPSSTDTAGSAPARKRF-TSSDARVLGDGVRL 156
           P +P++ D AGS   +KR+ T+ +  VLG  +RL
Sbjct: 468 PVNPATADAAGSGSGKKRYPTAEEILVLGGYLRL 501

>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor|
          Length = 1460

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 422
           G+PG  G A P+        RGAPGDRG
Sbjct: 772 GAPGDKGEAGPSGPAGPTGARGAPGDRG 799

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRGL 425
           G PG +G + PA +  +  + G PG+RGL
Sbjct: 216 GPPGAIGPSGPAGKDGESGRPGRPGERGL 244

>ZN592_HUMAN (Q92610) Zinc finger protein 592|
          Length = 1267

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -2

Query: 430 SCRPRSPGAPRCCPWRGRTAGSAAPSCPGLP 338
           S  P +P AP   P  G T+GSA+P  P LP
Sbjct: 669 STAPAAP-APSSSPKHGLTSGSASPPPPALP 698

>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRGL 425
           G PG +G + PA +  +  + G PG+RGL
Sbjct: 215 GPPGAIGPSGPAGKDGESGRPGRPGERGL 243

>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 23/79 (29%), Positives = 33/79 (41%)
 Frame = +1

Query: 157 SRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAKDEIFCLF 336
           SRTPSP++ A   VK  L+   P  S   G LG      + + +  P +     EI    
Sbjct: 485 SRTPSPRSPAPARVKAELSSPTPGSSPVPGELGLAGALFLPQYVFGPDAAPPASEILAKM 544

Query: 337 EGVLDNLGRLSQQYGLSKG 393
             ++ +  RL Q  G   G
Sbjct: 545 SELVHS--RLQQGAGAGAG 561

>CSKI2_HUMAN (Q8WXE0) Caskin-2|
          Length = 1202

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 415 SPGAPRCCPWRGRTAGSAAPSCPGLPRTGRRSHPLQR 305
           +PG P   PW          + P  PR  RRSH L R
Sbjct: 767 APGPPPGAPWAFSYLAGPPATPPDPPRPKRRSHSLSR 803

>LGT_RHOSH (O33551) Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-)|
           (Fragment)
          Length = 202

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 15/34 (44%), Positives = 16/34 (47%)
 Frame = -2

Query: 409 GAPRCCPWRGRTAGSAAPSCPGLPRTGRRSHPLQ 308
           G P   PW     G AA SCPG+     R HP Q
Sbjct: 161 GRPTTLPWGVAFPGEAAQSCPGIEGICAR-HPSQ 193

>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 339 GSPGQLGAAEPAVRPLQGQQRGAPGDRG 422
           G+PG  G A P+        RGAPGDRG
Sbjct: 765 GAPGDKGEAGPSGPAGPTGARGAPGDRG 792

>ACS2_ZYGBA (Q96VC7) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA|
           ligase 2) (Acyl-activating enzyme 2)
          Length = 675

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 172 PKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLLLPRSFAAKDEIF 327
           PKTR+ ++++R L       + +LG L  +A S V     +P   AA DE F
Sbjct: 623 PKTRSGKIMRRVLRKVASNEADQLGDLSTMANSEV-----VPSIIAAVDEQF 669

>Y4FC_RHISN (P55441) Hypothetical monooxygenase y4fC (EC 1.-.-.-)|
          Length = 244

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 338 SNRQKISSFAAKDLGRRRDSLTWE*ARLPSDPSSTDTAGSAPARKRFTSSDAR 180
           S+  K S+ ++K++G+R  S             +T +AGS+P R RFT S  R
Sbjct: 162 SDISKCSTSSSKEVGKRGRSF------------ATRSAGSSPTRPRFTRSVTR 202

>FADB_PSEPK (Q88L02) Fatty oxidation complex alpha subunit [Includes: Enoyl-CoA|
           hydratase (EC 4.2.1.17);
           Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC
           5.3.3.8); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35);
           3-hydroxybutyryl-CoA epimerase (EC 5.1.2.
          Length = 715

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
 Frame = +1

Query: 154 GSRTPSPKTRASELVKRFLAGADPAVSVELGSLGNLAYSHVKESLL--------LPRSFA 309
           G   P+P      + K    G D A+ VE      LA + V ESL+        L R   
Sbjct: 246 GPNYPAPVEAIKSIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQELKRKAK 305

Query: 310 AKDEI 324
           A DEI
Sbjct: 306 AHDEI 310

>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)|
          Length = 1758

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 339  GSPGQLGAAEPAVRPLQGQQRGAPGDRGL 425
            G PG+ G A PA R  Q    G PG  GL
Sbjct: 1018 GLPGEKGEAGPAARDGQKGDAGLPGQPGL 1046

>KSGA_RHOPA (Q6N5B4) Dimethyladenosine transferase (EC 2.1.1.-)|
           (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
           dimethyltransferase) (16S rRNA dimethylase) (High level
           kasugamycin resistance protein ksgA) (Kasugamycin
           dimethyltransferase)
          Length = 287

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -1

Query: 359 PKLSRTPSNRQKISSFAAKDLGRRRDSLTWE*ARLPSDPSS-TDTAGSAPARKRFT 195
           P+    P +R  +   AA   G+RR  L      L  DP+  T  AG  PAR+  T
Sbjct: 209 PRAQPEPCDRAALEQVAAAAFGQRRKMLRQSLKSLGVDPAQLTAAAGIDPARRAET 264


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,737,749
Number of Sequences: 219361
Number of extensions: 755716
Number of successful extensions: 3768
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3753
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)