ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet95e05 |
|---|---|
| Clone Library Name | barley_pub |
>LNK_MOUSE (O09039) Lymphocyte-specific adapter protein Lnk (Signal| transduction protein Lnk) (Lymphocyte adapter protein) Length = 548 Score = 35.0 bits (79), Expect = 0.086 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +1 Query: 277 AWLAEFKLLRLAAGQGPLHPSLPLPAFVAVASGPVRLRGDGPDKARQGTSSS--LDP 441 +WLAE LR + G G HP LP +A GP R D QG S LDP Sbjct: 269 SWLAE---LRASTGLGLEHPDTELPLSLAAEPGPARSPRGSTDSLDQGASPGVLLDP 322
>LRC50_HUMAN (Q8NEP3) Leucine-rich repeat-containing protein 50| Length = 725 Score = 32.0 bits (71), Expect = 0.73 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +1 Query: 322 GPLHPSLPLPAFVAVASGPVRLRGDGPDKARQGTSSSLDPPP 447 G P LPA + S PV+++G+ D+ +GT + PPP Sbjct: 460 GDQEPEGTLPAETLLLSPPVKVKGEDGDREPEGTLPAEAPPP 501 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +1 Query: 322 GPLHPSLPLPAFVAVASGPVRLRGDGPDKARQGTSSSLDPPP 447 GP P LPA + S PV ++G+ D +GT + PPP Sbjct: 409 GP-EPEGTLPAETLLLSSPVEVKGEDGDGEPEGTLPAEAPPP 449
>IAA16_ORYSA (P0C127) Auxin-responsive protein IAA16 (Indoleacetic acid-induced| protein 16) Length = 228 Score = 30.4 bits (67), Expect = 2.1 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 10/71 (14%) Frame = -1 Query: 395 SPRSLTGPEATATKAGSGRDGWRGP--------WPAAR--RRSLNSASQARKNPEMARGW 246 S L G +TA G DG++ WP R RR+L S+S + K P R Sbjct: 28 SSSGLQGNTSTAADGAKGNDGFKASRPAAPVVGWPPVRSFRRNLASSSSSSKPPRGGRDA 87 Query: 245 TARKAKGRNGR 213 A G+ R Sbjct: 88 AAAATGGKVAR 98
>UNC5B_HUMAN (Q8IZJ1) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) (p53-regulated receptor for death and life protein 1) Length = 945 Score = 30.0 bits (66), Expect = 2.8 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +1 Query: 328 LHPSLP--LPAFVAVASGPVRLRGDGPDKARQGTSSSLDPPP 447 LHPS+P L A + GPV D DK S LDP P Sbjct: 437 LHPSVPPDLTASAGIYRGPVYALQDSTDKIPMTNSPLLDPLP 478
>FLHB_ECOLI (P76299) Flagellar biosynthetic protein flhB| Length = 382 Score = 29.6 bits (65), Expect = 3.6 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +1 Query: 274 LAWLAEFKLLRLAAGQGPLHPS-LPLP 351 LAW+ + K RLA GQ P+ P+ LP+P Sbjct: 343 LAWVWQLKRWRLAGGQRPVQPTHLPVP 369
>CSPG4_HUMAN (Q6UVK1) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin| sulfate proteoglycan NG2) (Melanoma chondroitin sulfate proteoglycan) (Melanoma-associated chondroitin sulfate proteoglycan) Length = 2322 Score = 29.6 bits (65), Expect = 3.6 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -1 Query: 449 GGGGSRLDDVPCRA-LSGPSPRSLTGPEATATKAGSGRD-GWRGPWPAA 309 GGGG++ D RA L GP+ S+ GP+ + A + RD R P P A Sbjct: 1789 GGGGTQQDGFHFRAHLQGPAGASVAGPQTSEAFAITVRDVNERPPQPQA 1837
>Y004_MYCSM (Q50434) UPF0232 protein in recF-gyrB intergenic region| Length = 194 Score = 29.3 bits (64), Expect = 4.7 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = -1 Query: 389 RSLTGPEATATKAGSGRDGWRGPWPAARRRSLNSASQARKNPEMARGWTARKAKG 225 R +GP A R W GP P AR L A ++ +RGW+AR A+G Sbjct: 52 RGRSGP-ARRVGGNRRRRTWSGPGPDARDPQLLGA--VTQDLAKSRGWSARVAEG 103
>UNC5B_RAT (O08722) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) Length = 945 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = +1 Query: 328 LHPSLP--LPAFVAVASGPVRLRGDGPDKARQGTSSSLDPPP 447 LHPS P L A + GPV D DK S LDP P Sbjct: 437 LHPSAPPDLTASAGIYRGPVYALQDSADKIPMTNSPLLDPLP 478
>UNC5B_MOUSE (Q8K1S3) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5| homolog 2) Length = 945 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%) Frame = +1 Query: 328 LHPSLP--LPAFVAVASGPVRLRGDGPDKARQGTSSSLDPPP 447 LHPS P L A + GPV D DK S LDP P Sbjct: 437 LHPSAPPDLTASAGIYRGPVYALQDSADKIPMTNSPLLDPLP 478
>MAGI1_HUMAN (Q96QZ7) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) (Atrophin-1-interacting protein 3) (AIP3) (WW domain-containi Length = 1491 Score = 29.3 bits (64), Expect = 4.7 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = -1 Query: 317 PAARRRSLNSASQARKNPEMARGWT-ARKAKGRNGRTA 207 P+ RRRSL + R++PE RG + R+AK + R A Sbjct: 1396 PSRRRRSLERLLEQRRSPERRRGGSPERRAKSTDRRRA 1433
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 28.9 bits (63), Expect = 6.2 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Frame = -1 Query: 419 PCRALSG-PSPRSLTGPEATATKAGSGRDGWRGP 321 P R + G P PR L G + GRDG RGP Sbjct: 844 PGRGVKGLPGPRGLPGEPGKPSYGREGRDGVRGP 877
>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC| 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) Length = 1696 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = -1 Query: 449 GGGGSRLDDVPCRALSGPSPRSLTGPEATATKAGSGRDGWRG-PWPAA 309 G GG+ ++ PC A GP P G+GR RG P PAA Sbjct: 46 GNGGAAREEAPCEAPPGPLP---------GRAGGTGRRRRRGVPQPAA 84
>HEMA_CDVA4 (Q66001) Hemagglutinin glycoprotein| Length = 607 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +1 Query: 325 PLHPSLPLPAFVAVASGPVRLRGDGPD 405 PL PS+ L ++ GPV L GDG D Sbjct: 412 PLDPSIDLQLNISFTYGPVILNGDGMD 438
>SOMA_SEBSC (P87391) Somatotropin precursor (Growth hormone)| Length = 204 Score = 28.5 bits (62), Expect = 8.1 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = -1 Query: 425 DVPCRALSGPS-PRSLTGPEATATKAG 348 ++P R+LSG S PR+L P+ T KAG Sbjct: 103 EIPSRSLSGGSAPRNLISPKLTQLKAG 129
>MAGI1_MOUSE (Q6RHR9) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) Length = 1471 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -1 Query: 317 PAARRRSLNSASQARKNPEMARGWT-ARKAKGRNGRTA 207 P+ RRRSL R++PE RG + R+AK + R A Sbjct: 1376 PSRRRRSLERLLDQRRSPERRRGGSPERRAKSTDRRRA 1413
>BMP6_MOUSE (P20722) Bone morphogenetic protein 6 precursor (BMP-6)| (VG-1-related protein) (VGR-1) Length = 510 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/56 (35%), Positives = 24/56 (42%) Frame = +1 Query: 280 WLAEFKLLRLAAGQGPLHPSLPLPAFVAVASGPVRLRGDGPDKARQGTSSSLDPPP 447 WL + L + G PL P PLP A A G + G P +A Q PPP Sbjct: 10 WLCWWWGLLCSCGPPPLRP--PLPVAAAAAGGQLLGAGGSPVRAEQ-------PPP 56
>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1687 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = -1 Query: 449 GGGGSRLDDVPCRALSGPSPRSLTGPEATATKAGSGRDGWRG-PWPAA 309 G GG+ ++ PC A GP P G+GR RG P PAA Sbjct: 45 GNGGAAREEAPCEAPPGPLP---------GRAGGTGRRRRRGAPQPAA 83
>BMP6_RAT (Q04906) Bone morphogenetic protein 6 precursor (BMP-6)| (VG-1-related protein) (VGR-1) Length = 506 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/56 (35%), Positives = 24/56 (42%) Frame = +1 Query: 280 WLAEFKLLRLAAGQGPLHPSLPLPAFVAVASGPVRLRGDGPDKARQGTSSSLDPPP 447 WL + L + G PL P PLP A A G + G P +A Q PPP Sbjct: 10 WLCWWWGLLCSCGPPPLRP--PLPVAAAAAGGQLLGAGGSPVRAEQ-------PPP 56
>LBXCO_HUMAN (P84550) Ladybird homeobox corepressor 1| Length = 965 Score = 28.5 bits (62), Expect = 8.1 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = -1 Query: 449 GGGGSRLDDVPCRALSGPSPRSLTGPE 369 GGGG L + PC L GP+P + PE Sbjct: 752 GGGGYELRE-PCGPLGGPAPAKVFAPE 777 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,100,557 Number of Sequences: 219361 Number of extensions: 502779 Number of successful extensions: 2109 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 2031 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2106 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
