ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet95b06 |
|---|---|
| Clone Library Name | barley_pub |
>DAG_ANTMA (Q38732) DAG protein, chloroplast precursor| Length = 230 Score = 149 bits (376), Expect = 4e-36 Identities = 69/72 (95%), Positives = 71/72 (98%) Frame = +1 Query: 259 EQRETILLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFST 438 E+RETI+LPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFST Sbjct: 74 EERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFST 133 Query: 439 TTYTGFQCTVDE 474 TTYTGFQCTV E Sbjct: 134 TTYTGFQCTVTE 145
>UMP1_ARATH (Q9LKA5) Unknown mitochondrial protein At3g15000| Length = 395 Score = 75.5 bits (184), Expect = 7e-14 Identities = 34/70 (48%), Positives = 49/70 (70%) Frame = +1 Query: 265 RETILLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTT 444 +ETILL GCD+ HWL+V+E P PTR+++ID+Y+ TLA ++GS +EA+ +Y+ ST Sbjct: 87 KETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRC 145 Query: 445 YTGFQCTVDE 474 Y F V E Sbjct: 146 YYAFGALVSE 155
>RX_MOUSE (O35602) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 342 Score = 32.7 bits (73), Expect = 0.50 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = -1 Query: 341 GAGSFGNSMTISQWL*-SHPGSSMVSLCSLPGAAPAAVGLRRRWRPP 204 G+G G+++ + WL + PG +L SLPG P GL + PP Sbjct: 231 GSGPPGSALPLEPWLGPTLPGGGATALQSLPGFGPPGQGLPASYTPP 277
>RX_RAT (Q9JLT7) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 342 Score = 32.3 bits (72), Expect = 0.65 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%) Frame = -1 Query: 341 GAGSFGNSMTISQWL*SH-PGSSMVSLCSLPGAAPAAVGLRRRWRPP 204 G+G G+++ + WL PG +L SLPG P GL + PP Sbjct: 231 GSGPPGSALPLEPWLGPPLPGGGATALQSLPGFGPPGQGLPASYTPP 277
>RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anterior neural| fold homeobox protein) Length = 346 Score = 32.0 bits (71), Expect = 0.85 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = -1 Query: 341 GAGSFGNSMTISQWL*SH-PGSSMVSLCSLPGAAPAAVGLRRRWRPP 204 G G G ++ + WL PG +L SLPG P A L + PP Sbjct: 231 GGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPP 277
>GAB1_MOUSE (Q9QYY0) GRB2-associated-binding protein 1 (GRB2-associated binder| 1) Length = 695 Score = 29.6 bits (65), Expect = 4.2 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 354 DDRYLPQHPRHRPRQHGGSQEEHV 425 D+ Y+P +P PRQH GS E + Sbjct: 445 DENYVPMNPNSPPRQHSGSFTEPI 468
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 28.9 bits (63), Expect = 7.2 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +3 Query: 315 HGVPKGPRAHARADDRYLPQHPRHRPRQHGGSQEEHV--CLQHNHLHWVPVH 464 HG+P+ P+ PQHP P+QH Q H H H+ P H Sbjct: 389 HGLPQHPQR---------PQHPAPHPQQHSQLQPPHSQHPPPHQHIQHHPNH 431
>SRCH_HUMAN (P23327) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 699 Score = 28.9 bits (63), Expect = 7.2 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Frame = +3 Query: 306 ADRHGVPKGPRAHARADDRYLPQH----PRHRPRQHGGSQEEHVCLQHNHLH 449 A+ G +G R H D +H P HR H E+ V +H H Sbjct: 125 AEHGGQARGHRGHGSEDTEDSAEHRHHLPSHRSHSHQDEDEDEVVSSEHHHH 176
>NOIL_ELAOL (Q8S3M3) NOI-like protein| Length = 228 Score = 28.9 bits (63), Expect = 7.2 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 16/68 (23%) Frame = +3 Query: 309 DRHGVPKGPRAHARADDRYLPQH---PR-------------HRPRQHGGSQEEHVCLQHN 440 D H V + R H R +DR ++ PR HR R HG S ++ N Sbjct: 72 DYHVVKQHRRKHHRREDREFHRYVEAPRPHRSPFQGVDMDSHRSRNHGTSATMSSSVKRN 131 Query: 441 HLHWVPVH 464 +W+P H Sbjct: 132 SDNWLPQH 139
>KDTA_ECOLI (P0AC75) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)| (KDO transferase) Length = 425 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = -1 Query: 398 LPRTVARVLR*VSIICSR--------VGAGSFGNSMTISQWL*SHPGSSMVSLCSLPGAA 243 L + V R+LR +++I ++ V G+ N +T++ GS + P A Sbjct: 166 LGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVT-------GSLKFDISVTPQLA 218 Query: 242 PAAVGLRRRWRP 207 AV LRR+W P Sbjct: 219 AKAVTLRRQWAP 230
>KDTA_ECOL6 (P0AC76) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)| (KDO transferase) Length = 425 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = -1 Query: 398 LPRTVARVLR*VSIICSR--------VGAGSFGNSMTISQWL*SHPGSSMVSLCSLPGAA 243 L + V R+LR +++I ++ V G+ N +T++ GS + P A Sbjct: 166 LGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVT-------GSLKFDISVTPQLA 218 Query: 242 PAAVGLRRRWRP 207 AV LRR+W P Sbjct: 219 AKAVTLRRQWAP 230
>KDTA_ECO57 (P0AC77) 3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-)| (KDO transferase) Length = 425 Score = 28.5 bits (62), Expect = 9.4 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%) Frame = -1 Query: 398 LPRTVARVLR*VSIICSR--------VGAGSFGNSMTISQWL*SHPGSSMVSLCSLPGAA 243 L + V R+LR +++I ++ V G+ N +T++ GS + P A Sbjct: 166 LGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVT-------GSLKFDISVTPQLA 218 Query: 242 PAAVGLRRRWRP 207 AV LRR+W P Sbjct: 219 AKAVTLRRQWAP 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.132 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,649,815 Number of Sequences: 219361 Number of extensions: 726805 Number of successful extensions: 2122 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2055 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2115 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
