ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet95b04 |
|---|---|
| Clone Library Name | barley_pub |
>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC| 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) Length = 1696 Score = 34.7 bits (78), Expect = 0.11 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Frame = -2 Query: 375 GRYGLMLLLLNTRRAMKDSANSSCSDAGRTSGPIAVMFAFSASPAMVIRSL--------F 220 G L+L +R + +A+SS S + +S + + SAS ++ RSL Sbjct: 96 GANSLLLRRGRLKRNLSAAASSSSSPSSASSAAGGLPASCSASASLCTRSLDRKTLLQKH 155 Query: 219 RLMPRCPSSSSSWYTHRYALSCAPVSVRTTRDSRKRALARDVDSSAAAPPMRKRQLG 49 R + + S W H+ C V R S R + +D++AA R QLG Sbjct: 156 RQLLQLQPSDRDWVRHQLQRGCVHVFDRHMASSYLRPVLCTLDTTAAEVAARLLQLG 212
>MDH_SALMU (Q59838) Malate dehydrogenase (EC 1.1.1.37) (Fragment)| Length = 283 Score = 32.7 bits (73), Expect = 0.42 Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G +D C Y E D + G G Sbjct: 206 KAGGGSATLSMGQAAARFGLS-LVRALQGEKD-VVECAYVEGDGQYARFFSQPLLLGKNG 263 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 264 VEERKSIGTLS 274
>MDH_ERWCT (Q6D9D1) Malate dehydrogenase (EC 1.1.1.37)| Length = 311 Score = 32.7 bits (73), Expect = 0.42 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G ++ C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-ENGVVECAYVESDGKHARFFAQPILLGKDG 274 Query: 212 INLNKDLMTIA 244 + KD+ T++ Sbjct: 275 VAERKDIGTLS 285
>MDH_YERPS (P61893) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 32.3 bits (72), Expect = 0.55 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEED 193 + GG +A LS +A ARF LS +VR L G + N C Y E D Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-ESNVVECSYVEGD 257
>MDH_YERPE (P61892) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 32.3 bits (72), Expect = 0.55 Identities = 20/43 (46%), Positives = 25/43 (58%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEED 193 + GG +A LS +A ARF LS +VR L G + N C Y E D Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-ESNVVECSYVEGD 257
>MDH_PASMU (Q9CN86) Malate dehydrogenase (EC 1.1.1.37)| Length = 311 Score = 32.0 bits (71), Expect = 0.71 Identities = 19/43 (44%), Positives = 26/43 (60%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEED 193 + GG +A LS ++A ARF LS +V+ L G +N C Y E D Sbjct: 217 KAGGGSATLSMAQAAARFALS-LVKGLNG--ENVVECTYVEGD 256
>MDH_SHIFL (Q83Q04) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 32.0 bits (71), Expect = 0.71 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G Q C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQGEQ-GVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>MDH_ECOLI (P61889) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 32.0 bits (71), Expect = 0.71 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G Q C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQGEQ-GVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>MDH_ECOL6 (P61890) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 32.0 bits (71), Expect = 0.71 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G Q C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQGEQ-GVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>MDH_ECO57 (P61891) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 32.0 bits (71), Expect = 0.71 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G Q C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQGEQ-GVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>MDH_SALTY (P25077) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 30.8 bits (68), Expect = 1.6 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G + C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-EKGVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>MDH_SALTI (Q8Z3E0) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 30.8 bits (68), Expect = 1.6 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G + C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-EKGVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>MDH_SALPA (Q7WS85) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 30.8 bits (68), Expect = 1.6 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G + C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-EKGVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>MDH_SALCH (Q57JA9) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 30.8 bits (68), Expect = 1.6 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 11/71 (15%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE-----------GHRG 211 + GG +A LS +A ARF LS +VR L G + C Y E D + G G Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-EKGVVECAYVEGDGQYARFFSQPLLLGKNG 274 Query: 212 INLNKDLMTIA 244 + K + T++ Sbjct: 275 VEERKSIGTLS 285
>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein| phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat protein phosphatase) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory Length = 1717 Score = 30.4 bits (67), Expect = 2.1 Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 8/103 (7%) Frame = -2 Query: 333 AMKDSANSSCSDAGRTSGPIAVMFAFSASPAMVIRSL--------FRLMPRCPSSSSSWY 178 A S++SS + A + G + + SAS ++ RSL R + S W Sbjct: 136 AASSSSSSSAAAASHSPGAAGLPASCSASASLCTRSLDRKTLLLKHRQTLQLQPSDRDWV 195 Query: 177 THRYALSCAPVSVRTTRDSRKRALARDVDSSAAAPPMRKRQLG 49 H+ C V R + R + +D++A R QLG Sbjct: 196 RHQLQRGCVHVFDRHMASTYLRPVLCTLDTTAGEVAARLLQLG 238
>GLMU_LEIXX (Q6ADP6) Bifunctional protein glmU [Includes:| UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphate uridyltransferase); Glucosamine-1-phosphate N-acetyltransferase (EC 2.3.1.157)] Length = 486 Score = 30.0 bits (66), Expect = 2.7 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEEGHRGI-NLNKDLMTI 241 R GG+AA + ++ R+VRT TG D R V ++ E R I +N + Sbjct: 126 RAGGSAATILSAFPAVAAGYGRIVRTSTGRLD---RIVEHKDATEAERAIGEINAGIYVF 182 Query: 242 AGDALKANITAI 277 AL+ + AI Sbjct: 183 GAAALRDKLAAI 194
>MDH_KLEVA (P61896) Malate dehydrogenase (EC 1.1.1.37) (Fragment)| Length = 232 Score = 30.0 bits (66), Expect = 2.7 Identities = 20/47 (42%), Positives = 26/47 (55%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEEGH 205 + GG +A LS +A ARF LS +VR + G + C Y E D GH Sbjct: 187 KAGGGSATLSMGQAAARFGLS-LVRAMQG-EKGVVECAYVEGD--GH 229
>BEM4_YEAST (P39011) Bud emergence protein 4| Length = 633 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +2 Query: 185 EEDEEGHRGINLNKDLMTIAGDALKANITAIGPLVLPASEQLLFALSFIARRVFNNKSI 361 EED +NL+ L TI N T LVL + L+ +L + + FNNK I Sbjct: 272 EEDVNCELLLNLSTCLETIVAKDETINFTNEEQLVLSMQKNLILSLVCLESKTFNNKLI 330
>MDH_KLEOX (P61894) Malate dehydrogenase (EC 1.1.1.37) (Fragment)| Length = 223 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEED 193 + GG +A LS +A ARF LS +VR + G + C Y E D Sbjct: 182 KAGGGSATLSMGQAAARFGLS-LVRAMQG-EKGVVECAYVEGD 222
>MDH_KLETE (P61895) Malate dehydrogenase (EC 1.1.1.37) (Fragment)| Length = 225 Score = 29.6 bits (65), Expect = 3.5 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEED 193 + GG +A LS +A ARF LS +VR + G + C Y E D Sbjct: 184 KAGGGSATLSMGQAAARFGLS-LVRAMQG-EKGVVECAYVEGD 224
>GTR4_RAT (P19357) Solute carrier family 2, facilitated glucose transporter| member 4 (Glucose transporter type 4, insulin-responsive) Length = 509 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +2 Query: 5 GTPNYYVGKERAMLLPNCLFRMGGAAALLSTSRAKARFRLSRVVRTLTGA 154 G + ++G++RAML N L +GG AL+ + A A + + + R L GA Sbjct: 100 GIISQWLGRKRAMLANNVLAVLGG--ALMGLANAAASYEILILGRFLIGA 147
>GUB_RHOMR (P45798) Beta-glucanase precursor (EC 3.2.1.73) (Endo-beta-1,3-1,4| glucanase) (1,3-1,4-beta-D-glucan 4-glucanohydrolase) (Lichenase) Length = 286 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/36 (36%), Positives = 16/36 (44%) Frame = -3 Query: 125 TAGSVPWRGTWTAAPPRRPCGRGSWAAAWRAPCRRS 18 T G W R P GRG+W A W P R++ Sbjct: 112 TRGKASWTYGRFEIRARLPSGRGTWPAIWMLPDRQT 147
>MDH_VIBMA (Q6AW23) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE 199 + GG +A LS +A ARF LS +VR L G ++ C Y + E Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-EEGIVECTYVDGGSE 259
>MDH_MORJA (Q6AW21) Malate dehydrogenase (EC 1.1.1.37)| Length = 312 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/45 (40%), Positives = 25/45 (55%) Frame = +2 Query: 65 RMGGAAALLSTSRAKARFRLSRVVRTLTGAQDNAYRCVYQEEDEE 199 + GG +A LS +A ARF LS +VR L G ++ C Y + E Sbjct: 217 KAGGGSATLSMGQAAARFGLS-LVRALQG-EEGIVECTYVDGGSE 259
>GLT11_CAEEL (Q7K755) Putative polypeptide N-acetylgalactosaminyltransferase 11| (EC 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 11) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 11) (pp-GaNTase 11) Length = 605 Score = 28.9 bits (63), Expect = 6.0 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%) Frame = -2 Query: 366 GLMLLLLNTRRAMKDSANSSCSDAGRT-SGPIA--VMFAFSASPAMVIRSLFRLMPR 205 GL+ + +RR +KDS N+ CS + S P A V+ F+ SP+++IR + + R Sbjct: 129 GLLSDRIGSRRKIKDSRNARCSSLTYSDSLPAASIVVCYFNESPSVLIRMVNSIFDR 185
>POGZ_HUMAN (Q7Z3K3) Pogo transposable element with ZNF domain| Length = 1410 Score = 28.9 bits (63), Expect = 6.0 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 2/101 (1%) Frame = -2 Query: 321 SANSSCSDAGRTSGPIAVMFAFSASPAMVIRSLFR-LMPRCPSSSSSWYTHR-YALSCAP 148 S NSS + RTSGP + M S+ P ++ R + PRC + R + C P Sbjct: 340 SNNSSAHGSQRTSGPESSMKVTSSIPVFDLQDGGRKICPRCNAQFRVTEALRGHMCYCCP 399 Query: 147 VSVRTTRDSRKRALARDVDSSAAAPPMRKRQLGSSMARSLP 25 V + + V S+A P K +S S P Sbjct: 400 EMVEYQKKGKSLDSEPSVPSAAKPPSPEKTAPVASTPSSTP 440
>GTR4_MOUSE (P14142) Solute carrier family 2, facilitated glucose transporter| member 4 (Glucose transporter type 4, insulin-responsive) (GT2) Length = 509 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/50 (36%), Positives = 29/50 (58%) Frame = +2 Query: 5 GTPNYYVGKERAMLLPNCLFRMGGAAALLSTSRAKARFRLSRVVRTLTGA 154 G + ++G++RAML N L +GG AL+ + A A + + + R L GA Sbjct: 100 GIISQWLGRKRAMLANNVLAVLGG--ALMGLANAVASYEILILGRFLIGA 147
>GTR4_HUMAN (P14672) Solute carrier family 2, facilitated glucose transporter| member 4 (Glucose transporter type 4, insulin-responsive) Length = 509 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +2 Query: 5 GTPNYYVGKERAMLLPNCLFRMGGAAALLSTSRAKARFRLSRVVRTLTGA 154 G + ++G++RAML+ N L +GG +L+ + A A + + + R L GA Sbjct: 100 GIISQWLGRKRAMLVNNVLAVLGG--SLMGLANAAASYEMLILGRFLIGA 147
>GELS_MOUSE (P13020) Gelsolin precursor (Actin-depolymerizing factor) (ADF)| (Brevin) Length = 780 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -1 Query: 448 CLQLVDHGAT-ARMDAEVLERQPEVGEVRPDALVVEHP 338 C H AT +R A+ Q V E RP +VVEHP Sbjct: 18 CALSPSHAATTSRGRAQERAPQSRVSEARPSTMVVEHP 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,419,834 Number of Sequences: 219361 Number of extensions: 867700 Number of successful extensions: 3699 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3695 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
