ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet95b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete se... 42 1.4
2gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete seq... 42 1.4
3ref|NM_123122.2| Arabidopsis thaliana EMB2656 AT5G37630 (EMB2656... 40 5.4
4gb|AC129588.10| Mus musculus chromosome 3, clone RP23-296L7, com... 40 5.4
5gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 5.4
6gb|AC102849.5| Mus musculus, clone RP24-423P7, complete sequence 40 5.4
7gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence 40 5.4
8emb|AL049845.7|HSJ485C17 Human DNA sequence from clone RP3-485C1... 40 5.4
9emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 5.4
10gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, com... 40 5.4
11dbj|BS000051.1| Pan troglodytes chromosome 22 clone:RP43-089B14,... 40 5.4
12dbj|AB018107.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 5.4
13gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 5.4
14emb|AL645928.9| Mouse DNA sequence from clone RP23-185J21 on chr... 40 5.4

>gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete sequence
          Length = 93881

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 89    tggtggatgttctttggatttgatg 113
             ||||||||||||||||| |||||||
Sbjct: 40890 tggtggatgttctttgggtttgatg 40866



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>gb|AC147839.2| Xenopus tropicalis clone CH216-9N23, complete sequence
          Length = 184473

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   aacaagcctagcacactctca 177
             |||||||||||||||||||||
Sbjct: 11482 aacaagcctagcacactctca 11502



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>ref|NM_123122.2| Arabidopsis thaliana EMB2656 AT5G37630 (EMB2656) mRNA, complete cds
          Length = 3375

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 286  ttgttctgatggtttcagat 305
            ||||||||||||||||||||
Sbjct: 2679 ttgttctgatggtttcagat 2660



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>gb|AC129588.10| Mus musculus chromosome 3, clone RP23-296L7, complete sequence
          Length = 180845

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    tggtttcagattctcaaatg 314
              ||||||||||||||||||||
Sbjct: 172269 tggtttcagattctcaaatg 172250



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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      ctgaagcaagagcacaagga 59
               ||||||||||||||||||||
Sbjct: 1847856 ctgaagcaagagcacaagga 1847875



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>gb|AC102849.5| Mus musculus, clone RP24-423P7, complete sequence
          Length = 162547

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 295  tggtttcagattctcaaatg 314
            ||||||||||||||||||||
Sbjct: 6779 tggtttcagattctcaaatg 6760



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>gb|AC099533.36| Pan troglodytes clone rp43-41g5, complete sequence
          Length = 226331

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 238    caacagccccaagtcattag 257
              ||||||||||||||||||||
Sbjct: 217903 caacagccccaagtcattag 217884



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>emb|AL049845.7|HSJ485C17 Human DNA sequence from clone RP3-485C17 on chromosome 6q12-13 Contains
             a novel gene and the 3' part of a novel gene, complete
             sequence
          Length = 92854

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 298   tttcagattctcaaatgcac 317
             ||||||||||||||||||||
Sbjct: 41878 tttcagattctcaaatgcac 41859



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      ctgaagcaagagcacaagga 59
               ||||||||||||||||||||
Sbjct: 1832420 ctgaagcaagagcacaagga 1832439



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>gb|AC091042.6| Homo sapiens chromosome 18, clone RP11-563H6, complete sequence
          Length = 149173

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   aacaagcctagcacactctc 176
             ||||||||||||||||||||
Sbjct: 86503 aacaagcctagcacactctc 86522



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>dbj|BS000051.1| Pan troglodytes chromosome 22 clone:RP43-089B14, map 22, complete
             sequences
          Length = 165502

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 22    ctttggtgatttcagatcctgaag 45
             |||||||||||||||| |||||||
Sbjct: 93651 ctttggtgatttcagaccctgaag 93628



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>dbj|AB018107.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K12B20
          Length = 78874

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   ttgttctgatggtttcagat 305
             ||||||||||||||||||||
Sbjct: 32650 ttgttctgatggtttcagat 32631



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     atcctgaagcaagagcacaa 56
              ||||||||||||||||||||
Sbjct: 395287 atcctgaagcaagagcacaa 395306



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>emb|AL645928.9| Mouse DNA sequence from clone RP23-185J21 on chromosome 11, complete
             sequence
          Length = 158913

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tggatgttctttggatttga 111
             ||||||||||||||||||||
Sbjct: 67797 tggatgttctttggatttga 67816


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,719,275
Number of Sequences: 3902068
Number of extensions: 3719275
Number of successful extensions: 66825
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66767
Number of HSP's gapped (non-prelim): 58
length of query: 403
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 381
effective length of database: 17,147,199,772
effective search space: 6533083113132
effective search space used: 6533083113132
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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