ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet94f08 |
|---|---|
| Clone Library Name | barley_pub |
>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor| Length = 1745 Score = 37.4 bits (85), Expect = 0.019 Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Frame = -2 Query: 303 FHGPPGAHRTPRDVRCSSGHWTLPPAEP-FPGLAGR*AEKITLPEAPAGVSGLPNVAVNR 127 F GPPGA P+ V SG PP P FPG G P PAG+ G+P + R Sbjct: 390 FEGPPGAPG-PQGVVGPSG----PPGPPGFPGDPG--------PPGPAGLPGIPGIDGIR 436 Query: 126 HIPAREILTRFPFGG 82 P I+ F F G Sbjct: 437 GPPGTVIMMPFQFAG 451
>CATB_STRRE (O87864) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 740 Score = 32.3 bits (72), Expect = 0.61 Identities = 33/85 (38%), Positives = 39/85 (45%), Gaps = 16/85 (18%) Frame = +3 Query: 204 LPTLETVQPEVG-SSGRKSTARR------AVSGAPPAAHENP-EDRVPFTPGRT-----H 344 L TLE VQ E SSG K + +G AA E E +VPFTPGR H Sbjct: 518 LRTLENVQQEFNASSGAKKVSLADLIVLGGAAGVEKAAKEAGFEIQVPFTPGRVDATEEH 577 Query: 345 NRIRS---PR*TASGQWNNVGKGSR 410 + S TA G N +GKG+R Sbjct: 578 TDVESFEALEPTADGFRNYLGKGNR 602
>COFA1_MOUSE (O35206) Collagen alpha-1(XV) chain precursor [Contains: Endostatin| (Endostatin-XV)] Length = 1367 Score = 32.3 bits (72), Expect = 0.61 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -2 Query: 234 PPAEP-FPGLAGR*AEKITLPEAPAGVSGLP 145 PP P +PGL G+ E + P+ P G+ GLP Sbjct: 1033 PPGLPGYPGLVGQKGEAVVGPQGPPGIPGLP 1063
>FRAT1_HUMAN (Q92837) Proto-oncogene FRAT1 (Frequently rearranged in advanced| T-cell lymphomas) (Frat-1) Length = 279 Score = 31.6 bits (70), Expect = 1.0 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Frame = -3 Query: 410 PTSLAYIVPLARGCSP----WRPDAVMSTTGRERYSILRIFMGRRGRTGHRAT--CGALP 249 P LA VP + SP P A+ T G +LR +G RGR RA C A Sbjct: 74 PGPLAAAVPADKARSPAVPLLLPPALAETVGPAPPGVLRCALGDRGRVRGRAAPYCVAEL 133 Query: 248 ATGP 237 ATGP Sbjct: 134 ATGP 137
>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor| Length = 1364 Score = 31.2 bits (69), Expect = 1.3 Identities = 23/56 (41%), Positives = 26/56 (46%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 145 P +GPPG P R G P A FPG AGR T P P+G+SG P Sbjct: 762 PSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGISGPP 805
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%) Frame = -2 Query: 297 GPPGAHRTPRDVRCS--SGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGL 148 G PGA PR SG LP +PG+ G E + E PAG+ GL Sbjct: 573 GMPGAPGKPRSAGSDGLSGSPGLPGIPGYPGMKGEAGEIVGPMENPAGIPGL 624
>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor| Length = 675 Score = 30.8 bits (68), Expect = 1.8 Identities = 32/89 (35%), Positives = 35/89 (39%) Frame = -2 Query: 297 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIP 118 GPPG + P D L PA P PG AG+ + P P G SGLP R P Sbjct: 88 GPPGPNGPPGD------RGALGPAGP-PGPAGK---GLPGPPGPPGPSGLPGGNGFRGPP 137 Query: 117 AREILTRFPFGGCA*SRYLPGLPRPLGSA 31 L FP PG P P G A Sbjct: 138 GPSGLPGFPGP--------PGPPGPPGLA 158
>US10_EHV4 (P18349) 28 kDa protein (ORF3)| Length = 259 Score = 30.8 bits (68), Expect = 1.8 Identities = 13/18 (72%), Positives = 14/18 (77%) Frame = +1 Query: 124 VAVDGDVRKSGDAGGGLG 177 +AVDGDVR GD GGG G Sbjct: 40 MAVDGDVRTGGDCGGGEG 57
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 30.4 bits (67), Expect = 2.3 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Frame = -3 Query: 422 GSVLPTSLAYIVPLARGCSPWRPDAVMSTTGRERYSILR-IFMGRRGRTGHRATCGALPA 246 GS+ P +L+ VP + SP D ++ G + S R G R R G CG L A Sbjct: 151 GSLSPGALSSGVPGSGNSSPLPSDFLIRHHGPKPVSSQRNAGTGSRKRVGTARCCGELWA 210 Query: 245 TGPYLRLNR--FQGWQAVKQKR*LFPRPPPASPDFLTSPSTA 126 TG + R G + +R P + P+ ++P TA Sbjct: 211 TGSKGQGERATTSGAERTAPRRNCLPGASGSGPELDSAPRTA 252
>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.0 bits (66), Expect = 3.0 Identities = 22/56 (39%), Positives = 26/56 (46%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 145 P +GPPG P R G P A FPG AGR T P P+G++G P Sbjct: 764 PSGPNGPPG----PAGSRGDGGP---PGATGFPGAAGR-----TGPPGPSGITGPP 807
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 30.0 bits (66), Expect = 3.0 Identities = 24/86 (27%), Positives = 31/86 (36%) Frame = -2 Query: 300 HGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHI 121 H PPG R P V G G AG LPE PAG L + + Sbjct: 1856 HAPPGT-RKPHTVVVQMGE----------GTAG--TVTTLLPEEPAGALDLTGMRPESQL 1902 Query: 120 PAREILTRFPFGGCA*SRYLPGLPRP 43 +++ +FPFG + P P Sbjct: 1903 ACCDMVYKFPFGSSCTGTFHPAPSAP 1928
>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor| Length = 1690 Score = 29.6 bits (65), Expect = 3.9 Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 1/92 (1%) Frame = -2 Query: 309 PDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITL-PEAPAGVSGLPNVAV 133 P GPPG H R G LP PG G + + P PAG+ GLP Sbjct: 818 PGVPGPPG-HSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPG--- 873 Query: 132 NRHIPAREILTRFPFGGCA*SRYLPGLPRPLG 37 +P R G LPG+P P G Sbjct: 874 ---LPGRP--------GAHGPPGLPGIPGPFG 894
>SFTPA_MACMU (Q9TUC5) Pulmonary surfactant-associated protein A (SP-A) (PSP-A)| (PSAP) (Fragment) Length = 165 Score = 29.6 bits (65), Expect = 3.9 Identities = 19/51 (37%), Positives = 21/51 (41%) Frame = -2 Query: 297 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 145 GPPG P D+ C G+ LP A PG G E G GLP Sbjct: 7 GPPGPMGPPGDMPCFPGNDGLPGAPGIPGECGEKGE-----PGERGPPGLP 52
>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) (mDIA1) (p140mDIA) Length = 1255 Score = 29.6 bits (65), Expect = 3.9 Identities = 23/76 (30%), Positives = 28/76 (36%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 133 PP PG+ P G PP PFPG G +P P G+ P Sbjct: 684 PPPPPPLPGSVGVPPPPPLPGGPGLPPPPPPFPGAPG-------IPPPPPGMGVPPPPPF 736 Query: 132 NRHIPAREILTRFPFG 85 +PA +L PFG Sbjct: 737 GFGVPAAPVL---PFG 749
>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor| Length = 1763 Score = 29.6 bits (65), Expect = 3.9 Identities = 33/102 (32%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Frame = -2 Query: 309 PDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEK-ITLPEAPAGVSGLPNVAV 133 P G PG P R + G P PGL G E + P+ PAG+ GLP + Sbjct: 1320 PGAKGEPGLSGIPGK-RGNDGIPGKPGPAGLPGLPGMKGESGLPGPQGPAGLPGLPGLKG 1378 Query: 132 NRHI---PAREILTRFPFGGCA*SRYLPGLPRPLG-SAYPCA 19 + P ++ T FP +PGLP G S YP A Sbjct: 1379 EPGLPGFPGQKGETGFPG-----QPGIPGLPGMKGDSGYPGA 1415 Score = 28.5 bits (62), Expect = 8.7 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 13/100 (13%) Frame = -2 Query: 309 PDFHGPPGAHRTPRDVRCSSGHWTLP-----PAEP-------FPGLAGR*AEKITLPEAP 166 P G PG PR ++ +G P P P PGL G+ + IT P+ Sbjct: 1222 PGLEGQPG----PRGMKGEAGLPGAPGRDGLPGLPGMKGEAGLPGLPGQPGKSITGPKGN 1277 Query: 165 AGVSGLPNVAVNRHIPAREILTRFP-FGGCA*SRYLPGLP 49 AG+ GLP +P + P + G A + PGLP Sbjct: 1278 AGLPGLPGKDGLPGLPGLKGEPGKPGYAGAAGIKGEPGLP 1317
>LITAF_BRARE (Q6GMG8) Lipopolysaccharide-induced tumor necrosis factor-alpha| factor homolog (LPS-induced TNF-alpha factor homolog) Length = 163 Score = 29.6 bits (65), Expect = 3.9 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +1 Query: 238 GPVAGRAPHVARCPVRPRRPMKIRRIEYRSRPVVLITASGL 360 G V G P A CPV + I R+EY S P+V ++ +GL Sbjct: 86 GLVFGNVPVQAHCPVCSQSV--ITRLEYSSGPLVWLSCAGL 124
>GUNB_FUSOX (P46236) Putative endoglucanase type B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) Length = 462 Score = 29.6 bits (65), Expect = 3.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +3 Query: 207 PTLETVQPEVGSSGRKSTARRAVSGAPPAAHENP 308 P+ T + G +TA +V+ APPAA +NP Sbjct: 74 PSSTTATKTTATGGSSTTAGGSVTSAPPAASDNP 107
>CO4A5_CANFA (Q28247) Collagen alpha-5(IV) chain precursor| Length = 1691 Score = 29.3 bits (64), Expect = 5.1 Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 18/105 (17%) Frame = -2 Query: 309 PDFHGPPGAHRT--------PRDVRCSSGHWTLPPAEPFPGLAGR*AEK-------ITLP 175 P GPPG + P+ V+ S G +P PGL G+ EK I LP Sbjct: 1017 PGLTGPPGLKGSIGDMGFPGPQGVKGSPGPPGVPGQPGSPGLPGQKGEKGDPGVSGIGLP 1076 Query: 174 --EAPAGVSGLPNVAVNRHIPAREILTRFP-FGGCA*SRYLPGLP 49 P G +GLP N I T P G ++ PGLP Sbjct: 1077 GLPGPKGEAGLPGYPGNPGIKGSMGDTGLPGLPGTPGAKGQPGLP 1121
>MAVS_MOUSE (Q8VCF0) Mitochondrial antiviral signaling protein (Interferon-beta| promoter stimulator protein 1) (IPS-1) (Virus-induced signaling adapter) (CARD adapter inducing interferon-beta) (Cardif) Length = 503 Score = 29.3 bits (64), Expect = 5.1 Identities = 21/69 (30%), Positives = 28/69 (40%) Frame = -2 Query: 216 PGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIPAREILTRFPFGGCA*SRYLPGLPRPLG 37 PG + R E + LP+ PA VSG A +IP + R P P+P+ Sbjct: 98 PGTSLRSLEPLQLPDFPAAVSGPSAFAPGHNIPDHGL------------RETPSCPKPVQ 145 Query: 36 SAYPCASAV 10 P S V Sbjct: 146 DTQPPESPV 154
>TIF1B_MOUSE (Q62318) Transcription intermediary factor 1-beta (TIF1-beta)| (Tripartite motif protein 28) (KRAB-A-interacting protein) (KRIP-1) Length = 834 Score = 28.9 bits (63), Expect = 6.7 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 5/50 (10%) Frame = +3 Query: 228 PEVGSSGRKSTARRAVSGAPPAAHENPEDR---VPFT--PGRTHNRIRSP 362 P G + K A GAPPAA E PE + +P T PG R+ SP Sbjct: 546 PLPGMAIVKEEETEAAIGAPPAAPEGPETKPVLMPLTEGPGAEGPRLASP 595
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 28.9 bits (63), Expect = 6.7 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 4/102 (3%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 133 PP PP R+P R G PP+ PG+A R +I P++P G + N+ Sbjct: 1119 PPQRPPPPSGARSPAPARKEFGGVGAPPS---PGVARR---EIEAPKSP-GTARKDNIGR 1171 Query: 132 NRHIPAREILTRFPFGGCA*SRYLPG----LPRPLGSAYPCA 19 N+ P + P G A +P + P A CA Sbjct: 1172 NQPSPQAGLAGPGPAGYGAARPTIPARAGVISAPQSQARVCA 1213
>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)| Length = 1670 Score = 28.9 bits (63), Expect = 6.7 Identities = 28/87 (32%), Positives = 33/87 (37%) Frame = -2 Query: 297 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAVNRHIP 118 GPPG PR R G P+ P PG+ G G GL R P Sbjct: 360 GPPG----PRGARGPQG-----PSGP-PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRP 409 Query: 117 AREILTRFPFGGCA*SRYLPGLPRPLG 37 ++ + GCA S LPG P P G Sbjct: 410 GKDAMGTPGSPGCAGSPGLPGSPGPPG 436
>DNAE2_BRUSU (Q8G381) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1077 Score = 28.9 bits (63), Expect = 6.7 Identities = 24/70 (34%), Positives = 28/70 (40%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 133 PPD P A R + + G L P G GR AE+I A AGV + V Sbjct: 131 PPDEDEPDFAARLTEIAQAAPGSVWLALTMPHQGQDGRRAERIARFAAQAGVPLIATNDV 190 Query: 132 NRHIPAREIL 103 H P R L Sbjct: 191 LYHHPDRRPL 200
>DNAE2_BRUME (Q8YEK2) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1077 Score = 28.9 bits (63), Expect = 6.7 Identities = 24/70 (34%), Positives = 28/70 (40%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 133 PPD P A R + + G L P G GR AE+I A AGV + V Sbjct: 131 PPDEDEPDFAARLTEIAQAAPGSVWLALTMPHQGQDGRRAERIARFAAQAGVPLIATNDV 190 Query: 132 NRHIPAREIL 103 H P R L Sbjct: 191 LYHHPDRRPL 200
>DNAE2_BRUAB (Q57FU7) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1077 Score = 28.9 bits (63), Expect = 6.7 Identities = 24/70 (34%), Positives = 28/70 (40%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 133 PPD P A R + + G L P G GR AE+I A AGV + V Sbjct: 131 PPDEDEPDFAARLTEIAQAAPGSVWLALTMPHQGQDGRRAERIARFAAQAGVPLIATNDV 190 Query: 132 NRHIPAREIL 103 H P R L Sbjct: 191 LYHHPDRRPL 200
>ADA11_MOUSE (Q9R1V4) ADAM 11 precursor (A disintegrin and metalloproteinase| domain 11) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein) (MDC) Length = 773 Score = 28.9 bits (63), Expect = 6.7 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +2 Query: 83 PPKGNRVKISRAGM-WRLTATLGSPETPAGASGRVIFSA*RPANPGNGSAGGRVQWPE 253 PP G R + WR +A +GSPE+P G+ P+ S+GG V+ P+ Sbjct: 19 PPPGLGALGPRGALHWRSSAHVGSPESPEGS------EVTEPSRLVRQSSGGEVRKPQ 70
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 28.9 bits (63), Expect = 6.7 Identities = 23/76 (30%), Positives = 29/76 (38%) Frame = -2 Query: 312 PPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLPNVAV 133 PP G G P + G +PP PFPG G +P P G+ P Sbjct: 683 PPPLPGEAGMPPPPPPLPGGPG---IPPPPPFPGGPG-------IPPPPPGMGMPPPPPF 732 Query: 132 NRHIPAREILTRFPFG 85 +PA +L PFG Sbjct: 733 GFGVPAAPVL---PFG 745
>BAI3_MOUSE (Q80ZF8) Brain-specific angiogenesis inhibitor 3 precursor| Length = 1522 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +3 Query: 240 SSGRKSTARRAVSGAPPAAHENPEDRVPFTPGRTHNRIRSPR*TASGQWNNVGKGSRQNG 419 S+G + +R+ + AAH E R P+ R +P TA+GQWN G S + Sbjct: 417 SNGTQQRSRQCTA----AAHGGSECRGPWAESR---ECYNPECTANGQWNQWGHWSGCSK 469 Query: 420 SVTSG 434 S G Sbjct: 470 SCDGG 474
>BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 precursor| Length = 1522 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/65 (32%), Positives = 30/65 (46%) Frame = +3 Query: 240 SSGRKSTARRAVSGAPPAAHENPEDRVPFTPGRTHNRIRSPR*TASGQWNNVGKGSRQNG 419 S+G + +R+ + AAH E R P+ R +P TA+GQWN G S + Sbjct: 417 SNGTQQRSRQCTA----AAHGGSECRGPWAESR---ECYNPECTANGQWNQWGHWSGCSK 469 Query: 420 SVTSG 434 S G Sbjct: 470 SCDGG 474
>ZN694_HUMAN (Q63HK3) Zinc finger protein 694| Length = 967 Score = 28.9 bits (63), Expect = 6.7 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -2 Query: 321 VLDPPDFHGPPGAHRTPRDVRCSSG 247 ++ P+F GPPG ++P D SG Sbjct: 643 IVQEPEFQGPPGLLQSPNDFEIGSG 667
>YDEQ_BACSU (P96674) Putative NAD(P)H oxidoreductase ydeQ (EC 1.6.99.-)| Length = 197 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/51 (35%), Positives = 23/51 (45%) Frame = +2 Query: 77 AHPPKGNRVKISRAGMWRLTATLGSPETPAGASGRVIFSA*RPANPGNGSA 229 AH P GN++K W ++GSPE A G +FS P SA Sbjct: 91 AHGPGGNKLKGKE---WVTAMSIGSPEHSYQAGGYNLFSISELTKPFQASA 138
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +1 Query: 193 CLTACQPWKRFSRR*GPVAGRAPHVARCPVRPR 291 CL CQ + S R GP R P R P PR Sbjct: 18 CLATCQSLQMGSVRKGPTGDRGPRGQRGPAGPR 50
>OC17_CHICK (Q9PRS8) Ovocleidin-17 (OC-17)| Length = 142 Score = 28.5 bits (62), Expect = 8.7 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 5/57 (8%) Frame = +2 Query: 131 LTATLGSPETPAGASGRVIFSA*RPANP-----GNGSAGGRVQWPEEHRTSRGVRCA 286 L A+ G + GA GRV RPA +G+A W + RG RCA Sbjct: 58 LNASRGGDGSGEGADGRVWIGLHRPAGSRSWRWSDGTAPRFASWHRTAKARRGGRCA 114
>DTX_COROM (P00587) Diphtheria toxin precursor (DT) (NAD(+)--diphthamide| ADP-ribosyltransferase) (EC 2.4.2.36) [Contains: Diphtheria toxin fragment A; Diphtheria toxin fragment B] Length = 560 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = +3 Query: 279 GAPPAAHENPEDRVPFTPGRTHNRIRSPR*TASGQWNNVGKGSRQNGSVTSGK---DW 443 GAPP+AH +D V + S T G +++ KG ++ S T G DW Sbjct: 18 GAPPSAHAGADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDW 75
>DTXH_CORBE (P00589) Diphtheria toxin homolog CRM228 precursor [Contains:| Diphtheria toxin homolog CRM228 fragment A; Diphtheria toxin homolog CRM228 fragment B] Length = 560 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = +3 Query: 279 GAPPAAHENPEDRVPFTPGRTHNRIRSPR*TASGQWNNVGKGSRQNGSVTSGK---DW 443 GAPP+AH +D V + S T G +++ KG ++ S T G DW Sbjct: 18 GAPPSAHAGADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDW 75
>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1| Length = 2173 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 239 PYLRLNRFQGWQAVKQKR*LFPRPPPASPDFLTSPSTAT 123 P R +R Q W AV+ L P PASP L P+ A+ Sbjct: 1832 PKSRPSRNQRWGAVRADESLTAIPEPASPQLLDIPTHAS 1870
>SFTA1_HUMAN (Q8IWL2) Pulmonary surfactant-associated protein A1 precursor| (SP-A1) (SP-A) (PSP-A) (PSPA) (Alveolar proteinosis protein) (35 kDa pulmonary surfactant-associated protein) Length = 248 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/51 (35%), Positives = 21/51 (41%) Frame = -2 Query: 297 GPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPEAPAGVSGLP 145 GPPG P ++ C G+ LP A PG G E G GLP Sbjct: 55 GPPGPMGPPGEMPCPPGNDGLPGAPGIPGECGEKGE-----PGERGPPGLP 100
>DTX_CORBE (P00588) Diphtheria toxin precursor (DT) (NAD(+)--diphthamide| ADP-ribosyltransferase) (EC 2.4.2.36) [Contains: Diphtheria toxin fragment A; Diphtheria toxin fragment B] Length = 567 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 3/58 (5%) Frame = +3 Query: 279 GAPPAAHENPEDRVPFTPGRTHNRIRSPR*TASGQWNNVGKGSRQNGSVTSGK---DW 443 GAPP+AH +D V + S T G +++ KG ++ S T G DW Sbjct: 25 GAPPSAHAGADDVVDSSKSFVMENFSSYHGTKPGYVDSIQKGIQKPKSGTQGNYDDDW 82
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 28.5 bits (62), Expect = 8.7 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Frame = -2 Query: 291 PGA--HR-TPRDVRCSSGHWTLPPAEPFPGLAGR*AEKIT--LPEAPAGVSGLPNVAVNR 127 PGA HR TP ++R + T P + A +T LPE PAG L + Sbjct: 1829 PGAEPHRATPAELRAHALPGTRKPHTVVVQMGEGAAGTVTTLLPEEPAGALDLTGMRPES 1888 Query: 126 HIPAREILTRFPFGGCA*SRYLPGLPRP 43 + ++ +FPFG + P P Sbjct: 1889 RLACCDMAYKFPFGSSCTGTFHPAPSAP 1916
>CO8A1_HUMAN (P27658) Collagen alpha-1(VIII) chain precursor (Endothelial| collagen) Length = 744 Score = 28.5 bits (62), Expect = 8.7 Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 7/111 (6%) Frame = -2 Query: 348 GYEYDRA*TVLDPPDFHGPPGAHRTPRDVRCSSGHWTLPPAEPFPGLAGR*AEKITLPE- 172 G+ A V PP HGPPG P + P FPG G + E Sbjct: 244 GFGMPGAPGVKGPPGMHGPPGPVGLPGVGK--------PGVTGFPGPQGPLGKPGAPGEP 295 Query: 171 APAGVSGLPNVAVNRHI-----PAREILTRFP-FGGCA*SRYLPGLPRPLG 37 P G G+P V I P ++ + P F G + LPGLP P G Sbjct: 296 GPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPG 346 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,957,136 Number of Sequences: 219361 Number of extensions: 1894812 Number of successful extensions: 5533 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 5098 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5525 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
