Clone Information

BLAST Search Result

Clone Name	baet94f04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MAON_HUMAN (Q16798) NADP-dependent malic enzyme, mitochondrial p...	36	0.024
2	VEGFB_HUMAN (P49765) Vascular endothelial growth factor B precur...	36	0.024
3	ATG2_NEUCR (Q871L5) Autophagy-related protein 2	36	0.031
4	VEGFB_BOVIN (Q9XS49) Vascular endothelial growth factor B precur...	35	0.041
5	PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-c...	35	0.069
6	SYC_BRUSU (Q8G1N5) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst...	32	0.34
7	SYC_BRUME (Q8YG89) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst...	32	0.34
8	WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)	32	0.59
9	VEGFB_RAT (O35485) Vascular endothelial growth factor B precurso...	31	1.0
10	Y215_ADE02 (P03291) Hypothetical protein F-215	30	1.3
11	CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interacto...	30	2.2
12	SYC_BARQU (Q6G073) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst...	30	2.2
13	SYC_BARHE (Q6G5G9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cyst...	29	2.9
14	NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)	29	2.9
15	Y189_STRNO (Q9EYI6) UPF0189 protein in sno 5'region (ORF7)	29	2.9
16	UNG_HUMAN (P13051) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)	28	5.0
17	RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1	28	5.0
18	RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1	28	5.0
19	RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1	28	5.0
20	RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1	28	5.0
21	RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain...	28	5.0
22	DYN3_HUMAN (Q9UQ16) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular)...	28	5.0
23	BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO ...	28	5.0
24	TIG_STRCO (Q9F314) Trigger factor (TF)	28	6.5
25	Y126_ADE07 (P05670) Hypothetical 12.6 kDa early protein	28	6.5
26	MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)	28	6.5
27	PALI_YARLI (Q7Z8R5) pH-response regulator protein palI/RIM9	28	6.5
28	ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing pro...	28	6.5
29	MRP1_ARATH (Q9C8G9) Multidrug resistance-associated protein 1 (E...	28	6.5
30	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	28	6.5
31	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	28	6.5
32	EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin micr...	28	6.5
33	BIB_DROME (P23645) Neurogenic protein big brain	28	8.5
34	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	28	8.5
35	NIFA_AZOBR (P30667) Nif-specific regulatory protein	28	8.5
36	IL16_SAISC (O62677) Interleukin-16 precursor (IL-16) (Lymphocyte...	28	8.5
37	HDAC4_HUMAN (P56524) Histone deacetylase 4 (HD4)	28	8.5
38	IF2_MYCPA (Q73VV4) Translation initiation factor IF-2	28	8.5
39	IL2RB_MOUSE (P16297) Interleukin-2 receptor beta chain precursor...	28	8.5
40	MTL5_HUMAN (Q9Y4I5) Tesmin (Metallothionein-like 5, testis-speci...	28	8.5
41	SF04_MOUSE (Q8CH02) Splicing factor 4	28	8.5
42	NIFA_AZOLI (P54929) Nif-specific regulatory protein	28	8.5

>MAON_HUMAN (Q16798) NADP-dependent malic enzyme, mitochondrial precursor (EC|
           1.1.1.40) (NADP-ME) (Malic enzyme 3)
          Length = 604

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -2

Query: 186 TSLLPLDGRASGRRPHRSPSAGGTPSVFRPGTLRPSPSHQRGG*ARRGPSMARRAAY 16
           T L P  GRA G  P  +P+A       +PG  RP P  +RG    R P + +  A+
Sbjct: 9   TRLAPWPGRACGALPRWTPTAPAQGCHSKPGPARPVPLKKRGYDVTRNPHLNKGMAF 65

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>VEGFB_HUMAN (P49765) Vascular endothelial growth factor B precursor (VEGF-B)|
           (VEGF-related factor) (VRF)
          Length = 207

 Score = 36.2 bits (82), Expect = 0.024
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -1

Query: 217 LRSEHSLTVLHQPPPSR---WTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSAT 47
           ++ + + T  H+P P     W S   APSP  +    P   PS H AP + +      A 
Sbjct: 133 VKPDRAATPHHRPQPRSVPGWDSAPGAPSPADITHPTPAPGPSAHAAPSTTSALTPGPAA 192

Query: 46  RSVDGAPSSVRR 11
            + D A SSV +
Sbjct: 193 AAADAAASSVAK 204

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>ATG2_NEUCR (Q871L5) Autophagy-related protein 2|
          Length = 2011

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 208 EHSLTVLHQPPPSRWTSQ----RSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRS 41
           +H+ + + Q  P  W+S     RS PS  P   + P  +PS   +P    P+   S+ RS
Sbjct: 357 DHANSAIMQHQPELWSSYERGIRSEPSLHPPTSFQPQTMPSGAVSPAPSEPSSSASSVRS 416

Query: 40  VDGAPSS 20
            D  PS+
Sbjct: 417 DDDTPSA 423

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>VEGFB_BOVIN (Q9XS49) Vascular endothelial growth factor B precursor (VEGF-B)|
           (VEGF-related factor) (VRF)
          Length = 207

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = -1

Query: 217 LRSEHSLTVLHQPPPSR---WTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSAT 47
           ++ + + T  H+P P     W     APSP  +    P   PS H AP + +      AT
Sbjct: 133 VKPDRASTPHHRPQPRSVPGWDPAPGAPSPADITHPTPAPGPSAHAAPSAASALTPGPAT 192

Query: 46  RSVDGAPSSV 17
            + D A SSV
Sbjct: 193 AAADAAASSV 202

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>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = -1

Query: 211  SEHSLTVLHQPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDG 32
            S  +LTV  Q PP    +    PSP+P     PVG+P+   +P S +   + S   +   
Sbjct: 2329 SSMTLTVSRQNPPD---TSNKGPSPDPKKSLVPVGIPTSTVSPASPSKRNKSSVRHA--- 2382

Query: 31   APSSVRRRRL 2
             PS V R +L
Sbjct: 2383 QPSPVSRSKL 2392

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>SYC_BRUSU (Q8G1N5) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 506

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 217 LRSEHSLTVLHQPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSA 50
           L +  S+   H   P  WT+QR A S + L RWY +       AP   + A  V+A
Sbjct: 339 LAARLSMLQTHYREPINWTAQRLAESADELHRWYGLLRDEGFGAPEKLSHASAVAA 394

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>SYC_BRUME (Q8YG89) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 506

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 217 LRSEHSLTVLHQPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSA 50
           L +  S+   H   P  WT+QR A S + L RWY +       AP   + A  V+A
Sbjct: 339 LAARLSMLQTHYREPINWTAQRLAESADELHRWYGLLRDEGFGAPEKLSHASAVAA 394

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>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)|
          Length = 640

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 21/53 (39%), Positives = 27/53 (50%)
 Frame = -1

Query: 181 PPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPS 23
           PPP R    R AP   PL  + P   P+  +AP S  P ++  A  S +GAPS
Sbjct: 469 PPPPRAGPPRMAP---PLSLFPPPLNPNVLSAPPSIVPRQKSPAASSNEGAPS 518

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>VEGFB_RAT (O35485) Vascular endothelial growth factor B precursor (VEGF-B)|
           (VEGF-related factor) (VRF)
          Length = 207

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = -1

Query: 187 HQPPPSR---WTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPSSV 17
           H+P P     W S   A SP  +    P   PS H AP + +      A  + D A SS+
Sbjct: 143 HRPQPRSVLSWDSAPGASSPADIIHPTPAPGPSAHAAPSAVSALIPGPAVAAADAAASSI 202

Query: 16  RR 11
            +
Sbjct: 203 AK 204

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>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 187 HQPPPSRWTSQRSAPSPEPLCRWYPVGVPS 98
           HQP P    S   +P P+P  R  P G P+
Sbjct: 186 HQPAPGNQVSPGPSPRPDPAMRGKPAGAPA 215

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>CABL2_HUMAN (Q9BTV7) CDK5 and ABL1 enzyme substrate 2 (Interactor with CDK3 2)|
           (Ik3-2)
          Length = 478

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 181 PPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDG 32
           PPP+      + P PEP     P G+P+R  AP       +V     +DG
Sbjct: 73  PPPAEAREPPAPPPPEP-----PTGLPARTPAPQGLLSPTQVPTGLGLDG 117

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>SYC_BARQU (Q6G073) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 502

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 217 LRSEHSLTVLHQPPPSRWTSQRSAPSPEPLCRWY 116
           L +  S+   H   P  WT+QR   S   L RWY
Sbjct: 333 LSARFSMLQTHYREPLNWTAQRLVQSSSELYRWY 366

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>SYC_BARHE (Q6G5G9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA|
           ligase) (CysRS)
          Length = 503

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 217 LRSEHSLTVLHQPPPSRWTSQRSAPSPEPLCRWY 116
           L +  S+   H   P  WT+QR   S   L RWY
Sbjct: 333 LSARFSMLQTHYREPLNWTAQRLMQSSSELYRWY 366

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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -1

Query: 178 PPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPS 23
           PPS   S   +PSP P  R  P+  P R  +P S +P+  +S + S   +PS
Sbjct: 162 PPSPSPSPSPSPSPSPSPRSTPIPHP-RKRSPASPSPSPSLSKSPSPSESPS 212

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>Y189_STRNO (Q9EYI6) UPF0189 protein in sno 5'region (ORF7)|
          Length = 181

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 99  DGTPTGYHLQRGSGEGADRWLVHLEGGGWCST 194
           +G PTG  +   +G+   RW++H  G  W ST
Sbjct: 59  EGLPTGRAVATTAGDLDARWVIHTVGPVWSST 90

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>UNG_HUMAN (P13051) Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)|
          Length = 313

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 208 EHSLTVLHQPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGA 29
           + +L     P P+R   +R APSPEP  +   V      +   +  PA++  A +   G 
Sbjct: 4   QKTLYSFFSPSPAR---KRHAPSPEPAVQGTGVAGVPEESGDAAAIPAKKAPAGQEEPGT 60

Query: 28  PSS 20
           P S
Sbjct: 61  PPS 63

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>RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 184 QPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVS 53
           +PPP R++  R    P P+ R  P  +  R  +P   +P RR S
Sbjct: 244 RPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287

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>RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 184 QPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVS 53
           +PPP R++  R    P P+ R  P  +  R  +P   +P RR S
Sbjct: 244 RPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287

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>RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 184 QPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVS 53
           +PPP R++  R    P P+ R  P  +  R  +P   +P RR S
Sbjct: 244 RPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287

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>RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1|
          Length = 305

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 184 QPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVS 53
           +PPP R++  R    P P+ R  P  +  R  +P   +P RR S
Sbjct: 244 RPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287

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>RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain 1 (SR-related|
           protein LDC2)
          Length = 305

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 184 QPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVS 53
           +PPP R++  R    P P+ R  P  +  R  +P   +P RR S
Sbjct: 244 RPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287

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>DYN3_HUMAN (Q9UQ16) Dynamin-3 (EC 3.6.5.5) (Dynamin, testicular) (T-dynamin)|
          Length = 859

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -2

Query: 174 PLDGRASGRRPHRS-----PSAGGTPSVFRPGTLRPSPS 73
           PL    SGR P  +     P +G  P  FRPG L P PS
Sbjct: 775 PLARPTSGRGPAPAIPSPGPHSGAPPVPFRPGPLPPFPS 813

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>BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO|
            domain-containing protein 1)
          Length = 1012

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 126  AGGTPSVFRPGTLRPSPSHQRGG*ARRGPSMARRAAYDGGG 4
            A G P++ RPG+ +  P  Q+GG  +  P         GGG
Sbjct: 961  AMGNPNIGRPGSGQQGPQGQQGGWGQPPPQQQLYQQQGGGG 1001

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>TIG_STRCO (Q9F314) Trigger factor (TF)|
          Length = 468

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +3

Query: 36  STDRVALTLLAGAKEKGAVCLDGTPTGYHLQRGSGE---GADRWLVHLEGGGWCSTVKE 203
           + D   LTL   AK  G +  DG   G     GSGE   G D  +  LE GG  +   E
Sbjct: 159 AADGDVLTLDLQAKVDGEILEDGVADGVSYTIGSGELLDGIDEAVKGLEAGGEATFTSE 217

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>Y126_ADE07 (P05670) Hypothetical 12.6 kDa early protein|
          Length = 114

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 124 RWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPSSVRRRR 5
           R YP  VP+ H  P    P+R     R++D A    R  R
Sbjct: 18  RTYPRAVPTYHCQPCRRVPSRPCRPVRALDTASKHARSNR 57

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>MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)|
          Length = 1147

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
 Frame = -2

Query: 132  PSAG-GTPSVFRPGTLRPSPSHQRGG*ARRGPSMARRAAYDGG 7
            PSAG G P +  PG  R  P   RGG    GP   R     GG
Sbjct: 972  PSAGRGGPGMGGPGAGRGGPGMGRGGPGMGGPGAGRGGPGMGG 1014

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>PALI_YARLI (Q7Z8R5) pH-response regulator protein palI/RIM9|
          Length = 728

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = -1

Query: 211 SEHSLTVLHQPPPSRWTSQRSAPSPEPLCRWY--PVGVPSRHTAPFSFAPARRVSATRSV 38
           ++ +L  LHQP P+  T   S         WY  PV    R+    SF P   VS + S+
Sbjct: 545 TDDNLGTLHQPVPTTVTPSNSGALNNKDSPWYSPPVDEQFRN----SFIPDAPVSPSESI 600

Query: 37  DGAPSSVRRR 8
               +SV +R
Sbjct: 601 SSNFTSVSQR 610

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>ZC3H3_MOUSE (Q8CHP0) Zinc finger CCCH-type domain-containing protein 3|
          Length = 950

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = -1

Query: 181 PPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPSSVR 14
           P   +W +   + S     RW        HT+  S  P+R  S  R   G PSS++
Sbjct: 371 PSKYKWKASSPSASSSSSFRWQSEAGSKDHTSQLSPVPSRPTSGDRPA-GGPSSLK 425

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>MRP1_ARATH (Q9C8G9) Multidrug resistance-associated protein 1 (EC 3.6.3.44)|
            (Glutathione S-conjugate transporting ATPase 1)
            (ATP-energized glutathione S-conjugate pump 1)
          Length = 1622

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 17/65 (26%), Positives = 25/65 (38%)
 Frame = -1

Query: 211  SEHSLTVLHQPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDG 32
            SE  L + +  PP  W S  S    + + R+ P   P  H   F  +P  +V        
Sbjct: 1216 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGVSFLISPMDKVGIVGRTGA 1275

Query: 31   APSSV 17
              SS+
Sbjct: 1276 GKSSL 1280

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = -1

Query: 181 PPPSRWTSQRS-------APSPEPLCRWYPVGVPSRHTAPFSFAP--ARRVSATRSVDGA 29
           PPP R  +  S       +PS  P+ R      P +     S +P   RRVS++RSV G+
Sbjct: 710 PPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGS 769

Query: 28  PSSVRRR 8
           P    ++
Sbjct: 770 PEPAAKK 776



 Score = 27.7 bits (60), Expect = 8.5
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 181 PPPSRWT---SQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPSSVRR 11
           P P R++    +R +PSP P  R      P +  A  S  P RRVS +       S V +
Sbjct: 605 PSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTK 664

Query: 10  RR 5
           RR
Sbjct: 665 RR 666

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = -1

Query: 181 PPPSRWTSQRS-------APSPEPLCRWYPVGVPSRHTAPFSFAP--ARRVSATRSVDGA 29
           PPP R  +  S       +PS  P+ R      P +     S +P   RRVS++RSV G+
Sbjct: 697 PPPVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGS 756

Query: 28  PSSVRRR 8
           P    ++
Sbjct: 757 PEPAAKK 763



 Score = 27.7 bits (60), Expect = 8.5
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 181 PPPSRWT---SQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPSSVRR 11
           P P R++    +R +PSP P  R      P +  A  S  P RRVS +       S V +
Sbjct: 591 PSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTK 650

Query: 10  RR 5
           RR
Sbjct: 651 RR 652

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>EMIL3_HUMAN (Q9NT22) EMILIN-3 precursor (EMILIN-5) (Elastin microfibril|
           interface-located protein 5) (Elastin microfibril
           interfacer 5)
          Length = 766

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = +3

Query: 27  GAPSTDRVALTLLAGAKEKGAVCLDGTPTGYHLQRGSGEGADRWLVHLEGGGW 185
           GAP+ D   LT L+ A  +G V  DG   G     G+  GA    + L+ GGW
Sbjct: 413 GAPAGDE--LTRLSAAMLEGGV--DGLLEGLETLNGTEGGARGCCLRLDMGGW 461

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>BIB_DROME (P23645) Neurogenic protein big brain|
          Length = 696

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -1

Query: 178 PPSRWTSQRSAPSPEPLCRWYPVGVP-SRHTAPFSFAPARRVSA 50
           PP+R  S   +P P P+  + P   P + H  P      R+VSA
Sbjct: 591 PPARHPSVEPSPPPPPMLMYAPPPQPNAAHPQPIRTQSERKVSA 634

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 178 PPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAP--ARRVSATRSVDGAPSSVRRR 8
           P  +   + ++PS  P+ R      P +     S +P   RRVS++RSV G+P    ++
Sbjct: 746 PEPKKIKKAASPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKK 804

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>NIFA_AZOBR (P30667) Nif-specific regulatory protein|
          Length = 625

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 185 PASSL*MDEPAVGALTGAPLQVVPRRCSVQAHCALLLRTSEEGERDAVRRWRAE 24
           PA+ + +DEP  G+L    L  + R   VQA  A LL  +      A+R++  E
Sbjct: 568 PAAEVPLDEPESGSLRDRLLWAMERTGWVQAKAARLLGMTTRQVSYALRKYNIE 621

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>IL16_SAISC (O62677) Interleukin-16 precursor (IL-16) (Lymphocyte|
           chemoattractant factor) (LCF)
          Length = 627

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 193 VLHQPPPSRWTSQRSAP-SPEPLCRWYP 113
           V   PPP R  S+++ P SP+PL R  P
Sbjct: 214 VSESPPPGRQPSEKTLPPSPDPLLRLLP 241

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>HDAC4_HUMAN (P56524) Histone deacetylase 4 (HD4)|
          Length = 1084

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -3

Query: 161  EPAVGALTGAPLQVVPRRCSVQAHCALLLRTSEEGERDAVRRWRAEQRTTEEA 3
            E  V AL G  L  +P +   Q   A  +R+ E+      + WR  QRTT  A
Sbjct: 986  EACVSALLGNELDPLPEKVLQQRPNANAVRSMEKVMEIHSKYWRCLQRTTSTA 1038

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>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 19/57 (33%), Positives = 20/57 (35%)
 Frame = -2

Query: 174 PLDGRASGRRPHRSPSAGGTPSVFRPGTLRPSPSHQRGG*ARRGPSMARRAAYDGGG 4
           P  G + G  P R    GG     RPG  RP      G   R G        Y GGG
Sbjct: 207 PRPGASPGNMPPRPGGVGGPGRPARPGAPRPGGGRPGGPGGRDGGG----GNYRGGG 259

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>IL2RB_MOUSE (P16297) Interleukin-2 receptor beta chain precursor (IL-2|
           receptor) (P70-75) (High affinity IL-2 receptor beta
           subunit) (CD122 antigen)
          Length = 539

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -1

Query: 187 HQPPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAPSSVR 14
           H P PS + SQ S+     L +W    VP    +P    PA  +S    +DG   +V+
Sbjct: 284 HIPDPSEFFSQLSSQHGGDLQKWLSSPVPLSFFSP--SGPAPEISPLEVLDGDSKAVQ 339

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>MTL5_HUMAN (Q9Y4I5) Tesmin (Metallothionein-like 5, testis-specific)|
           (Testis-specific metallothionein-like protein)
          Length = 299

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 101 VQAHCALLLRTSEEGERDAVRRWRAEQRTTEE 6
           V+A CA LL   EE E++   +  AEQ   EE
Sbjct: 247 VEATCACLLAQGEEAEKEHCSKCLAEQMILEE 278

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>SF04_MOUSE (Q8CH02) Splicing factor 4|
          Length = 643

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 181 PPPSRWTSQRSAPSPEPLCRWYPVGVPSRHTAPFSFAPARRVSATRSVDGAP---SSVRR 11
           P P+   S R   +PE L       VP     P   APA  V+ T S+ G P   ++V+R
Sbjct: 324 PAPAPNPSLRRKSAPEALSG----AVPPITACPTPVAPAPAVNPTPSIPGKPTATAAVKR 379

Query: 10  RR 5
           +R
Sbjct: 380 KR 381

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>NIFA_AZOLI (P54929) Nif-specific regulatory protein|
          Length = 624

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = -3

Query: 185 PASSL*MDEPAVGALTGAPLQVVPRRCSVQAHCALLLRTSEEGERDAVRRWRAE 24
           PA+ + +DEP  G+L    L  + R   VQA  A LL  +      A+R++  E
Sbjct: 567 PAAEVPLDEPESGSLRDRLLWAMERTGWVQAKAARLLGMTTRQVSYALRKYNIE 620


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,279,807
Number of Sequences: 219361
Number of extensions: 847669
Number of successful extensions: 3732
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 3420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3725
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result