ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet94f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472209.1| Oryza sativa (japonica cultivar-group), predic... 194 2e-46
2emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4,... 194 2e-46
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
4dbj|AK112087.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 2e-46
5gb|BT017672.1| Zea mays clone EL01N0442D03.c mRNA sequence 137 3e-29
6gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete se... 90 7e-15
7dbj|AB106868.1| Lilium longiflorum LlglsA mRNA for gonidia formi... 90 7e-15
8ref|NM_120693.2| Arabidopsis thaliana DNA binding / heat shock p... 60 6e-06
9dbj|AP002030.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 60 6e-06
10gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, com... 46 0.095
11dbj|AK045406.1| Mus musculus adult male corpora quadrigemina cDN... 46 0.095
12gb|AC163614.4| Mus musculus BAC clone RP23-102K8 from chromosome... 44 0.38
13gb|AC108767.10| Mus musculus chromosome 3, clone RP24-377E5, com... 42 1.5
14ref|NG_004620.1| Rattus norvegicus tenascin X pseudogene (Tnx) o... 42 1.5
15gb|AC124773.4| Mus musculus BAC clone RP23-49B23 from 3, complet... 42 1.5
16emb|BX883044.1| Rattus norvegicus chromosome 20, major histocomp... 42 1.5
17emb|AL732320.8| Mouse DNA sequence from clone RP23-140D16 on chr... 42 1.5
18ref|NM_118561.2| Arabidopsis thaliana CPHSC70-1; ATP binding AT4... 40 5.9
19ref|XM_517328.1| PREDICTED: Pan troglodytes similar to serine/pr... 40 5.9
20gb|AC120339.18| Mus musculus chromosome 14, clone RP23-126A8, co... 40 5.9
21gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, com... 40 5.9
22gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 5.9
23gb|AY810018.1| Schistosoma japonicum SJCHGC09404 protein mRNA, p... 40 5.9
24gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome ... 40 5.9
25gb|BC017432.1| Homo sapiens AF4/FMR2 family, member 1, mRNA (cDN... 40 5.9
26gb|AY072138.1| Arabidopsis thaliana putative hsp 70 protein (At4... 40 5.9
27ref|NM_005935.1| Homo sapiens AF4/FMR2 family, member 1 (AFF1), ... 40 5.9
28emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BA... 40 5.9
29emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ... 40 5.9
30gb|AF487905.1| Homo sapiens MLL/AF4 fusion protein mRNA, partial... 40 5.9
31gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, co... 40 5.9
32gb|AF177239.1|AF177239 Homo sapiens cell-line MV4-11 AF4-MLL fus... 40 5.9
33gb|AF177238.1|AF177238 Homo sapiens patient A1 AF4-MLL fusion pr... 40 5.9
34gb|AF177231.1|AF177231 Homo sapiens clone 15-2 AF4 gene, intron 4 40 5.9
35gb|AF177230.1|AF177230 Homo sapiens clone 14-5 AF4 gene, intron 4 40 5.9
36gb|AF492832.1| Homo sapiens MLL/AF4 fusion protein mRNA, partial... 40 5.9
37gb|AC093779.3| Homo sapiens BAC clone RP11-168E22 from 4, comple... 40 5.9
38ref|XM_223161.3| PREDICTED: Rattus norvegicus myeloid/lymphoid o... 40 5.9
39gb|S67825.1|S67825 Homo sapiens ALL1-AF4 fusion protein mRNA, pa... 40 5.9
40emb|AJ238093.1|HSA238093 Homo sapiens partial AF-4 gene, exons 2... 40 5.9
41emb|Z83680.1|HSZ83680 Homo sapiens partial AF-4 gene, exon 4 40 5.9
42emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chr... 40 5.9
43gb|BT001950.1| Arabidopsis thaliana clone U19959 putative hsp 70... 40 5.9
44gb|AF024541.1|AF024541 Homo sapiens MLL-AF4 fusion protein mRNA,... 40 5.9
45gb|L22179.1|HUMMLLAF4F Human MLL-AF4 der(11) fusion protein mRNA... 40 5.9
46emb|AL732472.16| Mouse DNA sequence from clone RP23-41P22 on chr... 40 5.9
47gb|AE015925.1| Chlamydophila caviae GPIC, complete genome 40 5.9
48gb|AF031404.1|AF031404 Homo sapiens MLL-AF4 fusion protein mRNA,... 40 5.9
49gb|L13773.1|HUMAF4Y Human AF-4 mRNA, complete cds 40 5.9
50gb|L25050.1|HUMSPRP Human serine/proline-rich protein mRNA, comp... 40 5.9
51emb|AJ430597.1|HSA430597 Homo sapiens chromosomal breakpoint fra... 40 5.9 
>ref|XM_472209.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 771

 Score =  194 bits (98), Expect = 2e-46
 Identities = 179/206 (86%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttgcttaggaaagcaatacagaagtatccgaagggaacttccaggaggtgggaggttgtt 64
           |||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||| 
Sbjct: 223 ttgcttaggaaagcaatacaaaagtatccaaagggaacctcccggaggtgggaggttgtc 282

                                                                       
Query: 65  tcagagtttattggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgtt 124
           || ||||||||||| || || |||||||||||||| ||||||||||| || || || |||
Sbjct: 283 tctgagtttattggaactggaagatctgttgaagaaattctgaaggctacaaagactgtt 342

                                                                       
Query: 125 cttctgcagaagccagactctactaaagcttttgactcattccttgagaaacgtaaagca 184
           ||| ||||||| || |||||||| |||||||||||||| |||||||||||||| ||  ||
Sbjct: 343 cttttgcagaaaccggactctaccaaagcttttgactctttccttgagaaacgcaagcca 402

                                     
Query: 185 gctccatctattgtatcgcctctttc 210
           || || || |||| ||| ||||||||
Sbjct: 403 gcaccgtccattgcatcacctctttc 428



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                       
Query: 372 cagatccagatgcctggtcagaggctcaggtgctggcccttgttcaagctttgaaggcgt 431
           |||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct: 584 cagatccagaggcttggtcagaggcgcaagtgctggctcttgtacaagctttgaaggcat 643

               
Query: 432 ttcc 435
           ||||
Sbjct: 644 ttcc 647
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>emb|AL731623.3|OSJN00263 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083D01,
             complete sequence
          Length = 148353

 Score =  194 bits (98), Expect = 2e-46
 Identities = 179/206 (86%)
 Strand = Plus / Minus

                                                                         
Query: 5     ttgcttaggaaagcaatacagaagtatccgaagggaacttccaggaggtgggaggttgtt 64
             |||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||| 
Sbjct: 50145 ttgcttaggaaagcaatacaaaagtatccaaagggaacctcccggaggtgggaggttgtc 50086

                                                                         
Query: 65    tcagagtttattggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgtt 124
             || ||||||||||| || || |||||||||||||| ||||||||||| || || || |||
Sbjct: 50085 tctgagtttattggaactggaagatctgttgaagaaattctgaaggctacaaagactgtt 50026

                                                                         
Query: 125   cttctgcagaagccagactctactaaagcttttgactcattccttgagaaacgtaaagca 184
             ||| ||||||| || |||||||| |||||||||||||| |||||||||||||| ||  ||
Sbjct: 50025 cttttgcagaaaccggactctaccaaagcttttgactctttccttgagaaacgcaagcca 49966

                                       
Query: 185   gctccatctattgtatcgcctctttc 210
             || || || |||| ||| ||||||||
Sbjct: 49965 gcaccgtccattgcatcacctctttc 49940



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 372   cagatccagatgcctggtcagaggctcaggtgctggcccttgttcaagctttgaaggcgt 431
             |||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct: 49784 cagatccagaggcttggtcagaggcgcaagtgctggctcttgtacaagctttgaaggcat 49725

                 
Query: 432   ttcc 435
             ||||
Sbjct: 49724 ttcc 49721
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  194 bits (98), Expect = 2e-46
 Identities = 179/206 (86%)
 Strand = Plus / Minus

                                                                            
Query: 5        ttgcttaggaaagcaatacagaagtatccgaagggaacttccaggaggtgggaggttgtt 64
                |||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||| 
Sbjct: 18468792 ttgcttaggaaagcaatacaaaagtatccaaagggaacctcccggaggtgggaggttgtc 18468733

                                                                            
Query: 65       tcagagtttattggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgtt 124
                || ||||||||||| || || |||||||||||||| ||||||||||| || || || |||
Sbjct: 18468732 tctgagtttattggaactggaagatctgttgaagaaattctgaaggctacaaagactgtt 18468673

                                                                            
Query: 125      cttctgcagaagccagactctactaaagcttttgactcattccttgagaaacgtaaagca 184
                ||| ||||||| || |||||||| |||||||||||||| |||||||||||||| ||  ||
Sbjct: 18468672 cttttgcagaaaccggactctaccaaagcttttgactctttccttgagaaacgcaagcca 18468613

                                          
Query: 185      gctccatctattgtatcgcctctttc 210
                || || || |||| ||| ||||||||
Sbjct: 18468612 gcaccgtccattgcatcacctctttc 18468587



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 372      cagatccagatgcctggtcagaggctcaggtgctggcccttgttcaagctttgaaggcgt 431
                |||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct: 18468431 cagatccagaggcttggtcagaggcgcaagtgctggctcttgtacaagctttgaaggcat 18468372

                    
Query: 432      ttcc 435
                ||||
Sbjct: 18468371 ttcc 18468368
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>dbj|AK112087.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-B02, full
           insert sequence
          Length = 1788

 Score =  194 bits (98), Expect = 2e-46
 Identities = 179/206 (86%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttgcttaggaaagcaatacagaagtatccgaagggaacttccaggaggtgggaggttgtt 64
           |||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||| 
Sbjct: 740 ttgcttaggaaagcaatacaaaagtatccaaagggaacctcccggaggtgggaggttgtc 799

                                                                       
Query: 65  tcagagtttattggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgtt 124
           || ||||||||||| || || |||||||||||||| ||||||||||| || || || |||
Sbjct: 800 tctgagtttattggaactggaagatctgttgaagaaattctgaaggctacaaagactgtt 859

                                                                       
Query: 125 cttctgcagaagccagactctactaaagcttttgactcattccttgagaaacgtaaagca 184
           ||| ||||||| || |||||||| |||||||||||||| |||||||||||||| ||  ||
Sbjct: 860 cttttgcagaaaccggactctaccaaagcttttgactctttccttgagaaacgcaagcca 919

                                     
Query: 185 gctccatctattgtatcgcctctttc 210
           || || || |||| ||| ||||||||
Sbjct: 920 gcaccgtccattgcatcacctctttc 945



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                        
Query: 372  cagatccagatgcctggtcagaggctcaggtgctggcccttgttcaagctttgaaggcgt 431
            |||||||||| || ||||||||||| || |||||||| ||||| |||||||||||||| |
Sbjct: 1101 cagatccagaggcttggtcagaggcgcaagtgctggctcttgtacaagctttgaaggcat 1160

                
Query: 432  ttcc 435
            ||||
Sbjct: 1161 ttcc 1164
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>gb|BT017672.1| Zea mays clone EL01N0442D03.c mRNA sequence
          Length = 1045

 Score =  137 bits (69), Expect = 3e-29
 Identities = 144/169 (85%)
 Strand = Plus / Plus

                                                                       
Query: 6   tgcttaggaaagcaatacagaagtatccgaagggaacttccaggaggtgggaggttgttt 65
           |||||||||||||||| || |||||||| |||||||| || ||||| |||||||||||||
Sbjct: 79  tgcttaggaaagcaattcaaaagtatcctaagggaacatcgaggagatgggaggttgttt 138

                                                                       
Query: 66  cagagtttattggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgttc 125
           | || |||||||| ||  | ||||| ||||| |  ||||| |||||||| || || ||||
Sbjct: 139 ctgaatttattgggactagcagatcggttgagggaattctcaaggccaccaagactgttc 198

                                                            
Query: 126 ttctgcagaagccagactctactaaagcttttgactcattccttgagaa 174
           |||||||||||||||||||  | |||||||| ||||| |||||||||||
Sbjct: 199 ttctgcagaagccagactcatcgaaagctttcgactctttccttgagaa 247



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 103/124 (83%)
 Strand = Plus / Plus

                                                                       
Query: 314 cagacagccaatgagaaaactggtgctgatcctgtccccgaagaggcaccttctgcaaca 373
           |||||||||||||||||| ||| ||||||||||||| | || |  | ||| || |   ||
Sbjct: 360 cagacagccaatgagaaagctgctgctgatcctgtcacggatggaggaccatccgtgtca 419

                                                                       
Query: 374 gatccagatgcctggtcagaggctcaggtgctggcccttgttcaagctttgaaggcgttt 433
           ||||||||||||||| |||| || ||||| ||||| || || |||||||||||||| |||
Sbjct: 420 gatccagatgcctggacagatgcgcaggtcctggctctagtccaagctttgaaggctttt 479

               
Query: 434 ccca 437
           ||||
Sbjct: 480 ccca 483
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>gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete sequence
          Length = 123357

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 132/161 (81%)
 Strand = Plus / Plus

                                                                         
Query: 14    aaagcaatacagaagtatccgaagggaacttccaggaggtgggaggttgtttcagagttt 73
             |||| |||||| |||| ||| || |||||||| ||||| ||||||||||||||||| |  
Sbjct: 15511 aaaggaatacaaaagtttcccaaaggaacttcaaggagatgggaggttgtttcagaatac 15570

                                                                         
Query: 74    attggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgttcttctgcag 133
             ||||| || || |||||||||||||| ||  |||| || || |||||||||||||| |||
Sbjct: 15571 attggcactggaagatctgttgaagaaataatgaaagcaactaaaaccgttcttctccag 15630

                                                      
Query: 134   aagccagactctactaaagcttttgactcattccttgagaa 174
             ||||| ||  |  | |||||||||||  |||| ||||||||
Sbjct: 15631 aagcccgatacagccaaagcttttgatacatttcttgagaa 15671
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>dbj|AB106868.1| Lilium longiflorum LlglsA mRNA for gonidia forming protein GlsA,
            complete cds
          Length = 1968

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 126/153 (82%)
 Strand = Plus / Plus

                                                                        
Query: 23   cagaagtatccgaagggaacttccaggaggtgggaggttgtttcagagtttattggtacc 82
            ||||| |||| ||||||||| ||  | |||||||| ||| ||||||||| |||||| || 
Sbjct: 1453 cagaaatatcagaagggaacatctcgtaggtgggaagttatttcagagtatattggcact 1512

                                                                        
Query: 83   ggtagatctgttgaagagattctgaaggccacgaaaaccgttcttctgcagaagccagac 142
            || ||||| |||||||| || || || ||||| || || |||||||| || ||||| |||
Sbjct: 1513 gggagatcggttgaagaaatcctaaaagccacaaagactgttcttctccaaaagcctgac 1572

                                             
Query: 143  tctactaaagcttttgactcattccttgagaaa 175
            ||| | |||||||||||||| ||||| ||||||
Sbjct: 1573 tcttccaaagcttttgactctttcctcgagaaa 1605
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>ref|NM_120693.2| Arabidopsis thaliana DNA binding / heat shock protein binding /
            unfolded protein binding AT5G06110 mRNA, complete cds
          Length = 2171

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                        
Query: 65   tcagagtttattggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgtt 124
            |||||||  |||||||| || |||||||| || || ||||| ||||| || ||||| || 
Sbjct: 1510 tcagagtacattggtacaggaagatctgtggaggaaattctcaaggctactaaaacagta 1569

                                                  
Query: 125  cttctgcagaagccagactctactaaagcttttgactc 162
            ||||| ||||| || |||||  ||||||||||||||||
Sbjct: 1570 cttctccagaaacccgactcagctaaagcttttgactc 1607
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>dbj|AP002030.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K16F4
          Length = 34867

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                         
Query: 65    tcagagtttattggtaccggtagatctgttgaagagattctgaaggccacgaaaaccgtt 124
             |||||||  |||||||| || |||||||| || || ||||| ||||| || ||||| || 
Sbjct: 20127 tcagagtacattggtacaggaagatctgtggaggaaattctcaaggctactaaaacagta 20068

                                                   
Query: 125   cttctgcagaagccagactctactaaagcttttgactc 162
             ||||| ||||| || |||||  ||||||||||||||||
Sbjct: 20067 cttctccagaaacccgactcagctaaagcttttgactc 20030
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>gb|AC104930.9| Mus musculus chromosome 7, clone RP24-224C21, complete sequence
          Length = 156052

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 356   gaggcaccttctgcaacagatccagat 382
             ||||||||||||| |||||||||||||
Sbjct: 97839 gaggcaccttctggaacagatccagat 97813
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>dbj|AK045406.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230114H05
           product:hypothetical protein, full insert sequence
          Length = 2077

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 356 gaggcaccttctgcaacagatccagat 382
           ||||||||||||| |||||||||||||
Sbjct: 78  gaggcaccttctggaacagatccagat 52
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>gb|AC163614.4| Mus musculus BAC clone RP23-102K8 from chromosome 1, complete sequence
          Length = 201646

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 268    cagtgagccatccaaggcagct 289
              ||||||||||||||||||||||
Sbjct: 128416 cagtgagccatccaaggcagct 128395
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>gb|AC108767.10| Mus musculus chromosome 3, clone RP24-377E5, complete sequence
          Length = 167878

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 42     cttccaggaggtgggaggttg 62
              |||||||||||||||||||||
Sbjct: 148550 cttccaggaggtgggaggttg 148530
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>ref|NG_004620.1| Rattus norvegicus tenascin X pseudogene (Tnx) on chromosome 20
          Length = 44507

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 43   ttccaggaggtgggaggttgt 63
            |||||||||||||||||||||
Sbjct: 6047 ttccaggaggtgggaggttgt 6067
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>gb|AC124773.4| Mus musculus BAC clone RP23-49B23 from 3, complete sequence
          Length = 216860

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 42    cttccaggaggtgggaggttg 62
             |||||||||||||||||||||
Sbjct: 37508 cttccaggaggtgggaggttg 37488
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>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 3/11
          Length = 340493

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     ttccaggaggtgggaggttgt 63
              |||||||||||||||||||||
Sbjct: 290317 ttccaggaggtgggaggttgt 290337
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>emb|AL732320.8| Mouse DNA sequence from clone RP23-140D16 on chromosome 2, complete
             sequence
          Length = 192010

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    ctgttgaagagattctgaagg 110
             |||||||||||||||||||||
Sbjct: 70764 ctgttgaagagattctgaagg 70744
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>ref|NM_118561.2| Arabidopsis thaliana CPHSC70-1; ATP binding AT4G24280 (CPHSC70-1)
            mRNA, complete cds
          Length = 2456

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cagacagccaatgagaaaac 333
            ||||||||||||||||||||
Sbjct: 2250 cagacagccaatgagaaaac 2269
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>ref|XM_517328.1| PREDICTED: Pan troglodytes similar to serine/proline-rich FEL
            protein, splice form 1 - human (LOC461362), mRNA
          Length = 3629

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tgttgaagagattctgaagg 110
            ||||||||||||||||||||
Sbjct: 1112 tgttgaagagattctgaagg 1131
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>gb|AC120339.18| Mus musculus chromosome 14, clone RP23-126A8, complete sequence
          Length = 228458

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 405    tggcccttgttcaagctttg 424
              ||||||||||||||||||||
Sbjct: 223544 tggcccttgttcaagctttg 223525
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>gb|AC091331.14| Mus musculus chromosome 1, clone RP23-293F4, complete sequence
          Length = 236163

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    gccagcagcagtcagacagc 321
              ||||||||||||||||||||
Sbjct: 152277 gccagcagcagtcagacagc 152258
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ttgagaaacgtaaagcagct 187
              ||||||||||||||||||||
Sbjct: 461646 ttgagaaacgtaaagcagct 461627
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>gb|AY810018.1| Schistosoma japonicum SJCHGC09404 protein mRNA, partial cds
          Length = 2858

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 177  gtaaagcagctccatctatt 196
            ||||||||||||||||||||
Sbjct: 1287 gtaaagcagctccatctatt 1268
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>gb|AC135114.4| Mus musculus BAC clone RP24-69H7 from chromosome 14, complete sequence
          Length = 181062

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 405   tggcccttgttcaagctttg 424
             ||||||||||||||||||||
Sbjct: 38177 tggcccttgttcaagctttg 38158
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>gb|BC017432.1| Homo sapiens AF4/FMR2 family, member 1, mRNA (cDNA clone
            IMAGE:4720485), containing frame-shift errors
          Length = 1514

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tgttgaagagattctgaagg 110
            ||||||||||||||||||||
Sbjct: 1352 tgttgaagagattctgaagg 1371
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>gb|AY072138.1| Arabidopsis thaliana putative hsp 70 protein (At4g24280) mRNA,
            complete cds
          Length = 2495

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cagacagccaatgagaaaac 333
            ||||||||||||||||||||
Sbjct: 2251 cagacagccaatgagaaaac 2270
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>ref|NM_005935.1| Homo sapiens AF4/FMR2 family, member 1 (AFF1), mRNA
          Length = 9390

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tgttgaagagattctgaagg 110
            ||||||||||||||||||||
Sbjct: 1485 tgttgaagagattctgaagg 1504
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>emb|AL078637.1|ATT22A6 Arabidopsis thaliana DNA chromosome 4, BAC clone T22A6 (ESSA project)
          Length = 108459

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   cagacagccaatgagaaaac 333
             ||||||||||||||||||||
Sbjct: 44475 cagacagccaatgagaaaac 44494
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>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
          Length = 198402

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   cagacagccaatgagaaaac 333
             ||||||||||||||||||||
Sbjct: 61132 cagacagccaatgagaaaac 61151
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>gb|AF487905.1| Homo sapiens MLL/AF4 fusion protein mRNA, partial cds
          Length = 1874

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 431 tgttgaagagattctgaagg 450
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>gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, complete sequence
          Length = 189781

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tctgcagaagccagactcta 146
             ||||||||||||||||||||
Sbjct: 66747 tctgcagaagccagactcta 66766
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>gb|AF177239.1|AF177239 Homo sapiens cell-line MV4-11 AF4-MLL fusion protein (AF4-MLL)
           mRNA, partial cds
          Length = 596

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 462 tgttgaagagattctgaagg 481
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>gb|AF177238.1|AF177238 Homo sapiens patient A1 AF4-MLL fusion protein (AF4-MLL) mRNA,
           partial cds
          Length = 596

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 462 tgttgaagagattctgaagg 481
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>gb|AF177231.1|AF177231 Homo sapiens clone 15-2 AF4 gene, intron 4
          Length = 5934

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 29  tgttgaagagattctgaagg 48
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>gb|AF177230.1|AF177230 Homo sapiens clone 14-5 AF4 gene, intron 4
          Length = 5933

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 29  tgttgaagagattctgaagg 48
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>gb|AF492832.1| Homo sapiens MLL/AF4 fusion protein mRNA, partial cds
          Length = 741

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 335 tgttgaagagattctgaagg 354
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>gb|AC093779.3| Homo sapiens BAC clone RP11-168E22 from 4, complete sequence
          Length = 59663

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tgttgaagagattctgaagg 110
             ||||||||||||||||||||
Sbjct: 46752 tgttgaagagattctgaagg 46771
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>ref|XM_223161.3| PREDICTED: Rattus norvegicus myeloid/lymphoid or mixed-lineage
            leukemia (trithorax homolog, Drosophila); translocated
            to, 2 (predicted) (Mllt2_predicted), mRNA
          Length = 6662

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tgttgaagagattctgaagg 110
            ||||||||||||||||||||
Sbjct: 2399 tgttgaagagattctgaagg 2418
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>gb|S67825.1|S67825 Homo sapiens ALL1-AF4 fusion protein mRNA, partial cds
          Length = 832

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 609 tgttgaagagattctgaagg 628
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>emb|AJ238093.1|HSA238093 Homo sapiens partial AF-4 gene, exons 2 to 7 and Alu repeat elements
          Length = 52909

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tgttgaagagattctgaagg 110
             ||||||||||||||||||||
Sbjct: 40010 tgttgaagagattctgaagg 40029
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>emb|Z83680.1|HSZ83680 Homo sapiens partial AF-4 gene, exon 4
          Length = 180

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 87  tgttgaagagattctgaagg 106
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>emb|CT009541.12| Mouse DNA sequence from clone RP23-56C21 on chromosome 14, complete
              sequence
          Length = 215157

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     aggaggtgggaggttgtttc 66
              ||||||||||||||||||||
Sbjct: 155232 aggaggtgggaggttgtttc 155213
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>gb|BT001950.1| Arabidopsis thaliana clone U19959 putative hsp 70 protein (At4g24280)
            mRNA, complete cds
          Length = 2188

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cagacagccaatgagaaaac 333
            ||||||||||||||||||||
Sbjct: 2144 cagacagccaatgagaaaac 2163
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>gb|AF024541.1|AF024541 Homo sapiens MLL-AF4 fusion protein mRNA, partial cds
          Length = 495

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 89  tgttgaagagattctgaagg 108
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>gb|L22179.1|HUMMLLAF4F Human MLL-AF4 der(11) fusion protein mRNA, complete cds
          Length = 6940

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tgttgaagagattctgaagg 110
            ||||||||||||||||||||
Sbjct: 4372 tgttgaagagattctgaagg 4391
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>emb|AL732472.16| Mouse DNA sequence from clone RP23-41P22 on chromosome 2, complete
            sequence
          Length = 129369

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 260  ggagctggcagtgagccatccaaggcag 287
            |||||||||||||||||| | |||||||
Sbjct: 5276 ggagctggcagtgagccaacgaaggcag 5303
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>gb|AE015925.1| Chlamydophila caviae GPIC, complete genome
          Length = 1173390

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     tgaagagattctgaaggcca 113
              ||||||||||||||||||||
Sbjct: 779385 tgaagagattctgaaggcca 779366
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>gb|AF031404.1|AF031404 Homo sapiens MLL-AF4 fusion protein mRNA, partial cds
          Length = 741

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 335 tgttgaagagattctgaagg 354
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>gb|L13773.1|HUMAF4Y Human AF-4 mRNA, complete cds
          Length = 9390

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tgttgaagagattctgaagg 110
            ||||||||||||||||||||
Sbjct: 1485 tgttgaagagattctgaagg 1504
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>gb|L25050.1|HUMSPRP Human serine/proline-rich protein mRNA, complete cds
          Length = 3647

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tgttgaagagattctgaagg 110
            ||||||||||||||||||||
Sbjct: 1077 tgttgaagagattctgaagg 1096
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>emb|AJ430597.1|HSA430597 Homo sapiens chromosomal breakpoint fragment derivative 4, MLL/AF4
           fusion, patient Am
          Length = 179

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tgttgaagagattctgaagg 110
           ||||||||||||||||||||
Sbjct: 16  tgttgaagagattctgaagg 35


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,484,901
Number of Sequences: 3902068
Number of extensions: 4484901
Number of successful extensions: 107589
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107484
Number of HSP's gapped (non-prelim): 105
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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