| Clone Name | baet94d11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC104709.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1214_E03, complete sequence Length = 144601 Score = 65.9 bits (33), Expect = 8e-08 Identities = 90/109 (82%) Strand = Plus / Minus Query: 216 gtcggcgcggctgcagctggtgcccgccgctccgggcgcgtcgctggcagagcgcgcgca 275 ||||||| ||||||||||||| || || || |||||||||||| |||| ||||| ||| Sbjct: 80973 gtcggcgaggctgcagctggtcccggctgccccgggcgcgtcgatggccgagcgggcgag 80914 Query: 276 ggacgaccggcaccggcacgcctacatctccgcgaggctggcgtcgtcg 324 ||| ||| ||| ||||||| ||||||||||| ||||| ||| ||||| Sbjct: 80913 ggatgacaggcggcggcacgagtacatctccgccaggctcgcggcgtcg 80865
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 65.9 bits (33), Expect = 8e-08 Identities = 90/109 (82%) Strand = Plus / Minus Query: 216 gtcggcgcggctgcagctggtgcccgccgctccgggcgcgtcgctggcagagcgcgcgca 275 ||||||| ||||||||||||| || || || |||||||||||| |||| ||||| ||| Sbjct: 27484843 gtcggcgaggctgcagctggtcccggctgccccgggcgcgtcgatggccgagcgggcgag 27484784 Query: 276 ggacgaccggcaccggcacgcctacatctccgcgaggctggcgtcgtcg 324 ||| ||| ||| ||||||| ||||||||||| ||||| ||| ||||| Sbjct: 27484783 ggatgacaggcggcggcacgagtacatctccgccaggctcgcggcgtcg 27484735
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 50.1 bits (25), Expect = 0.005 Identities = 25/25 (100%) Strand = Plus / Plus Query: 207 gagcggggcgtcggcgcggctgcag 231 ||||||||||||||||||||||||| Sbjct: 485059 gagcggggcgtcggcgcggctgcag 485083
>gb|AC163887.2| Glomus intraradices clone JGIATSX-5E19, complete sequence Length = 35580 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 301 atctccgcgaggctggcgtcgtcgtc 326 ||||||||||||||| |||||||||| Sbjct: 26814 atctccgcgaggctgacgtcgtcgtc 26839
>emb|AL845358.2| Mouse DNA sequence from clone RP23-370J19 on chromosome 2, complete sequence Length = 31523 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 65 tccgctctgctctgctctgttc 86 |||||||||||||||||||||| Sbjct: 7806 tccgctctgctctgctctgttc 7785
>gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome 12, complete sequence Length = 166016 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 59 ctcccctccgctctgctctgctctg 83 |||| |||||||||||||||||||| Sbjct: 138507 ctccactccgctctgctctgctctg 138531
>ref|NM_198925.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B (SEMA4B), transcript variant 2, mRNA Length = 3809 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2830 acctcccctccgctctgctct 2850
>ref|NM_020210.2| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B (SEMA4B), transcript variant 1, mRNA Length = 3843 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2864 acctcccctccgctctgctct 2884
>gb|AC151982.4| Mus musculus BAC clone RP23-445J16 from chromosome 12, complete sequence Length = 183898 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 59 ctcccctccgctctgctctgctctg 83 |||| |||||||||||||||||||| Sbjct: 165787 ctccactccgctctgctctgctctg 165763
>gb|AY356152.1| Canis familiaris isolate cOR10S2P olfactory receptor family 10 subfamily S pseudogene, partial sequence Length = 609 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cgggcggtgcggatcggcagcaccg 200 ||||||||||||||| ||||||||| Sbjct: 423 cgggcggtgcggatccgcagcaccg 399
>gb|AY445887.1| Homo sapiens semaphorin 4b precursor (SEMA4B) mRNA, complete cds Length = 3807 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2841 acctcccctccgctctgctct 2861
>gb|AY358392.1| Homo sapiens clone DNA67962 semaphorin C (UNQ749) mRNA, complete cds Length = 3781 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2821 acctcccctccgctctgctct 2841
>emb|BX537671.1|HSM806571 Homo sapiens mRNA; cDNA DKFZp686A04130 (from clone DKFZp686A04130) Length = 3752 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2783 acctcccctccgctctgctct 2803
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 cgcgggcggtgcggatcggca 194 ||||||||||||||||||||| Sbjct: 230904 cgcgggcggtgcggatcggca 230924
>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29 Length = 300800 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 167 cggctgccgcgggcggtgcgg 187 ||||||||||||||||||||| Sbjct: 270113 cggctgccgcgggcggtgcgg 270093
>gb|BC094849.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B, mRNA (cDNA clone IMAGE:4866983), partial cds Length = 2606 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 1634 acctcccctccgctctgctct 1654
>gb|BC017658.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B, mRNA (cDNA clone IMAGE:3905299), partial cds Length = 2408 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 1444 acctcccctccgctctgctct 1464
>gb|BC019013.2| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B, mRNA (cDNA clone IMAGE:4562751) Length = 1594 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 625 acctcccctccgctctgctct 645
>emb|AL390082.1|IRO068748 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 68748 Length = 1487 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 520 acctcccctccgctctgctct 540
>emb|AL390081.1|IR1955967 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1955967 Length = 2967 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2090 acctcccctccgctctgctct 2110
>emb|AL390080.1|IRO159523 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 159523 Length = 1415 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 448 acctcccctccgctctgctct 468
>gb|BC010701.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B, mRNA (cDNA clone IMAGE:3855397), partial cds Length = 2641 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 1662 acctcccctccgctctgctct 1682
>gb|AE005851.1| Caulobacter crescentus CB15 section 177 of 359 of the complete genome Length = 10661 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 208 agcggggcgtcggcgcggctg 228 ||||||||||||||||||||| Sbjct: 1916 agcggggcgtcggcgcggctg 1936
>emb|CR605527.1| full-length cDNA clone CS0DC004YJ18 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1845 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 932 acctcccctccgctctgctct 952
>gb|AF258561.1|AF258561 Homo sapiens PP3686 mRNA, complete cds Length = 1880 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 914 acctcccctccgctctgctct 934
>gb|AF329639.1|AF329639 Drosophila virilis hairy 5' cis-regulatory region sequence Length = 7119 Score = 42.1 bits (21), Expect = 1.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 gctggcgtcgtcgtcgtcgncgtc 335 ||||||||||||||||||| |||| Sbjct: 5964 gctggcgtcgtcgtcgtcgtcgtc 5941
>ref|NG_004986.1| Canis familiaris cOR10S2P olfactory receptor family 10 subfamily S pseudogene (cOR10S2P) on chromosome 5 Length = 609 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 176 cgggcggtgcggatcggcagcaccg 200 ||||||||||||||| ||||||||| Sbjct: 423 cgggcggtgcggatccgcagcaccg 399
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 300 catctccgcgaggctggcgtcgtcgtcgtcgncgtc 335 ||||||||||| || | |||||||||||||| |||| Sbjct: 8678826 catctccgcgaagccgtcgtcgtcgtcgtcgtcgtc 8678791 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 cggcgcggctgcagctggtgcccg 241 ||||| |||||||||||||||||| Sbjct: 26118879 cggcggggctgcagctggtgcccg 26118856 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 315 ggcgtcgtcgtcgtcgncgtcaa 337 |||||||||||||||| |||||| Sbjct: 21246506 ggcgtcgtcgtcgtcgtcgtcaa 21246528 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cgaggctggcgtcgtcgtcg 327 |||||||||||||||||||| Sbjct: 19507941 cgaggctggcgtcgtcgtcg 19507960 Score = 40.1 bits (20), Expect = 4.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcgncgtcaagccg 341 ||||||| ||||||||||||||| ||||| |||| Sbjct: 18631141 gcgaggcccgcgtcgtcgtcgtcgtcgtcacgccg 18631175
>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence Length = 202381 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 109963 acctcccctccgctctgctct 109943
>dbj|AP004875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0463G12 Length = 145403 Score = 42.1 bits (21), Expect = 1.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 300 catctccgcgaggctggcgtcgtcgtcgtcgncgtc 335 ||||||||||| || | |||||||||||||| |||| Sbjct: 85873 catctccgcgaagccgtcgtcgtcgtcgtcgtcgtc 85838
>dbj|AK026108.1| Homo sapiens cDNA: FLJ22455 fis, clone HRC09777 Length = 3528 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2563 acctcccctccgctctgctct 2583
>dbj|AK027083.1| Homo sapiens cDNA: FLJ23430 fis, clone HRC11866 Length = 1779 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 814 acctcccctccgctctgctct 834
>gb|AC156581.4| Pan troglodytes BAC clone CH251-372H22 from chromosome unknown, complete sequence Length = 188418 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 cctccgctctgctctgctctg 83 ||||||||||||||||||||| Sbjct: 17929 cctccgctctgctctgctctg 17909
>emb|CT030740.8| Mouse DNA sequence from clone RP24-312D7 on chromosome 17, complete sequence Length = 215154 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 cctcccctccgctctgctctgctct 82 ||||| ||||||||||||||||||| Sbjct: 25570 cctccgctccgctctgctctgctct 25594
>gb|AC091332.8| Mus musculus chromosome 17, clone RP23-12K1, complete sequence Length = 216370 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 58 cctcccctccgctctgctctgctct 82 ||||| ||||||||||||||||||| Sbjct: 149372 cctccgctccgctctgctctgctct 149396
>gb|BC110853.1| Homo sapiens sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B, transcript variant 1, mRNA (cDNA clone MGC:131831 IMAGE:6020867), complete cds Length = 3544 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2585 acctcccctccgctctgctct 2605
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gtgtcgcggcgtcggctgccg 175 ||||||||||||||||||||| Sbjct: 1677779 gtgtcgcggcgtcggctgccg 1677799
>dbj|AB051532.1| Homo sapiens mRNA for KIAA1745 protein, partial cds Length = 3766 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 acctcccctccgctctgctct 77 ||||||||||||||||||||| Sbjct: 2818 acctcccctccgctctgctct 2838
>ref|XM_467050.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1887 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 cggcgcggctgcagctggtgcccg 241 ||||| |||||||||||||||||| Sbjct: 1082 cggcggggctgcagctggtgcccg 1105
>ref|XM_466086.1| Oryza sativa (japonica cultivar-group), mRNA Length = 743 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cgaggctggcgtcgtcgtcg 327 |||||||||||||||||||| Sbjct: 360 cgaggctggcgtcgtcgtcg 379
>ref|NM_190626.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1848 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 314 tggcgtcgtcgtcgtcgncgtcaagcc 340 ||||||||||||||||| |||| |||| Sbjct: 23 tggcgtcgtcgtcgtcgtcgtccagcc 49
>gb|AY260904.1| Rhodospirillum centenum Abc2b (abc2b), Abc2a (abc2a), RecX (recX), and CstS1 (cstS1) genes, complete cds; and unknown gene Length = 5508 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 ggtgcccgccgctccgggcg 253 |||||||||||||||||||| Sbjct: 2831 ggtgcccgccgctccgggcg 2812
>gb|AC122373.4| Mus musculus BAC clone RP23-464E7 from chromosome 13, complete sequence Length = 192969 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ctccgctctgctctgctctg 83 |||||||||||||||||||| Sbjct: 26598 ctccgctctgctctgctctg 26579
>gb|AY333070.1| Drosophila virilis antennapedia (Antp), CG10013 (CG10013), CG31217 (CG31217), and ultrabithorax (Ubx) genes, complete cds Length = 308092 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 315 ggcgtcgtcgtcgtcgncgtcaa 337 |||||||||||||||| |||||| Sbjct: 7694 ggcgtcgtcgtcgtcgtcgtcaa 7672
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 cgcgcaggacgaccggcacc 289 |||||||||||||||||||| Sbjct: 3009548 cgcgcaggacgaccggcacc 3009529
>gb|DQ285630.1| Oryza sativa (indica cultivar-group) putative nitrate-induced NOI protein (75-1-127BAC12.1), putative NBS-LRR disease resistance protein (Nbs1-Pi9), putative NBS-LRR disease resistance protein (Nbs3-Pi9), and NBS-LRR disease resistance protein (Pi9) genes, complete cds; putative NBS-LRR disease resistance protein (Nbs4-Pi9) pseudogene, complete sequence; putative NBS-LRR disease resistance protein (Nbs5-Pi9) gene, complete cds; putative NBS-LRR disease resistance protein (Nbs6-Pi9) gene, partial cds; and solo-long terminal repeat retrotransposon, complete sequence Length = 76272 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 ggctggcgtcgtcgtcgtcg 330 |||||||||||||||||||| Sbjct: 67326 ggctggcgtcgtcgtcgtcg 67307
>gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, complete sequence Length = 184007 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 62 ccctccgctctgctctgctctgtt 85 ||||| |||||||||||||||||| Sbjct: 139156 ccctctgctctgctctgctctgtt 139179
>dbj|AP009046.1| Hyphantria cunea nucleopolyhedrovirus genomic DNA, complete genome Length = 132959 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 314 tggcgtcgtcgtcgtcgncgtca 336 ||||||||||||||||| ||||| Sbjct: 126326 tggcgtcgtcgtcgtcgtcgtca 126304
>gb|AE012267.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 175 of 460 of the complete genome Length = 10029 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ctcccctcgccgttgccgga 31 |||||||||||||||||||| Sbjct: 5490 ctcccctcgccgttgccgga 5471
>gb|AF335098.1| Pinus taeda clone PtTX4178 microsatellite sequence Length = 240 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 317 cgtcgtcgtcgtcgncgtcaagc 339 |||||||||||||| |||||||| Sbjct: 106 cgtcgtcgtcgtcgtcgtcaagc 128
>gb|AC175193.2| Sporobolomyces roseus clone JGIBAIF-13I18, complete sequence Length = 33112 Score = 40.1 bits (20), Expect = 4.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 301 atctccgcgaggctggcgtcgtcgtcgtcgncgtc 335 ||||| |||| |||| |||||||||||||| |||| Sbjct: 28663 atctcggcgatgctgtcgtcgtcgtcgtcgtcgtc 28697
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ctcccctcgccgttgccgga 31 |||||||||||||||||||| Sbjct: 3106331 ctcccctcgccgttgccgga 3106350
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 317 cgtcgtcgtcgtcgncgtcaagccggc 343 |||||||||||||| ||||| |||||| Sbjct: 27297874 cgtcgtcgtcgtcgtcgtcacgccggc 27297848 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcg 330 |||||| ||||||||||||||||| Sbjct: 20850243 gcgaggatggcgtcgtcgtcgtcg 20850266
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gcaggacgaccggcaccggc 292 |||||||||||||||||||| Sbjct: 10896899 gcaggacgaccggcaccggc 10896880
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 317 cgtcgtcgtcgtcgncgtcaagc 339 |||||||||||||| |||||||| Sbjct: 19858273 cgtcgtcgtcgtcgtcgtcaagc 19858295
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 314 tggcgtcgtcgtcgtcgncgtcaagcc 340 ||||||||||||||||| |||| |||| Sbjct: 36640919 tggcgtcgtcgtcgtcgtcgtccagcc 36640893
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 314 tggcgtcgtcgtcgtcgncgtcaagcc 340 ||||||||||||||||| |||| |||| Sbjct: 114185 tggcgtcgtcgtcgtcgtcgtccagcc 114159
>dbj|AP004790.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0476H10 Length = 151703 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cgaggctggcgtcgtcgtcg 327 |||||||||||||||||||| Sbjct: 125468 cgaggctggcgtcgtcgtcg 125487
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0512H04 Length = 151049 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gcaggacgaccggcaccggc 292 |||||||||||||||||||| Sbjct: 120622 gcaggacgaccggcaccggc 120603
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 317 cgtcgtcgtcgtcgncgtcaagc 339 |||||||||||||| |||||||| Sbjct: 22923 cgtcgtcgtcgtcgtcgtcaagc 22945
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 317 cgtcgtcgtcgtcgncgtcaagc 339 |||||||||||||| |||||||| Sbjct: 98432 cgtcgtcgtcgtcgtcgtcaagc 98454
>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101075 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcg 330 |||||| ||||||||||||||||| Sbjct: 51973 gcgaggatggcgtcgtcgtcgtcg 51996
>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0698G06 Length = 138282 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 gcaggacgaccggcaccggc 292 |||||||||||||||||||| Sbjct: 36604 gcaggacgaccggcaccggc 36585
>dbj|AP004868.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0048B08 Length = 146874 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 cggcgcggctgcagctggtgcccg 241 ||||| |||||||||||||||||| Sbjct: 15706 cggcggggctgcagctggtgcccg 15683
>dbj|AP004839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0519A12 Length = 156676 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 218 cggcgcggctgcagctggtgcccg 241 ||||| |||||||||||||||||| Sbjct: 126325 cggcggggctgcagctggtgcccg 126302
>dbj|AP004062.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1471_E11 Length = 103912 Score = 40.1 bits (20), Expect = 4.7 Identities = 31/35 (88%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcgncgtcaagccg 341 ||||||| ||||||||||||||| ||||| |||| Sbjct: 57497 gcgaggcccgcgtcgtcgtcgtcgtcgtcacgccg 57531
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 315 ggcgtcgtcgtcgtcgncgtcaa 337 |||||||||||||||| |||||| Sbjct: 29041 ggcgtcgtcgtcgtcgtcgtcaa 29063
>dbj|AK111742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050K14, full insert sequence Length = 1623 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 cggcgcggctgcagctggtgcccg 241 ||||| |||||||||||||||||| Sbjct: 639 cggcggggctgcagctggtgcccg 662
>dbj|AK101013.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149B10, full insert sequence Length = 1875 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcg 330 |||||| ||||||||||||||||| Sbjct: 64 gcgaggatggcgtcgtcgtcgtcg 87
>dbj|AK100337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081E01, full insert sequence Length = 2693 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 314 tggcgtcgtcgtcgtcgncgtcaagcc 340 ||||||||||||||||| |||| |||| Sbjct: 360 tggcgtcgtcgtcgtcgtcgtccagcc 386
>dbj|AK100308.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078I11, full insert sequence Length = 2725 Score = 40.1 bits (20), Expect = 4.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 313 ctggcgtcgtcgtcgtcgncgtc 335 |||||||||||||||||| |||| Sbjct: 385 ctggcgtcgtcgtcgtcgtcgtc 363
>dbj|AK099985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130A06, full insert sequence Length = 1889 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcg 330 |||||| ||||||||||||||||| Sbjct: 64 gcgaggatggcgtcgtcgtcgtcg 87
>dbj|AK071217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085L22, full insert sequence Length = 1301 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 314 tggcgtcgtcgtcgtcgncgtcaagcc 340 ||||||||||||||||| |||| |||| Sbjct: 39 tggcgtcgtcgtcgtcgtcgtccagcc 65
>dbj|AK063708.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-B07, full insert sequence Length = 743 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 cgaggctggcgtcgtcgtcg 327 |||||||||||||||||||| Sbjct: 360 cgaggctggcgtcgtcgtcg 379
>gb|AC166361.2| Mus musculus BAC clone RP23-293N23 from chromosome 12, complete sequence Length = 212100 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 cctccgctctgctctgctct 82 |||||||||||||||||||| Sbjct: 146263 cctccgctctgctctgctct 146282
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 317 cgtcgtcgtcgtcgncgtcaagccggc 343 |||||||||||||| ||||| |||||| Sbjct: 27223474 cgtcgtcgtcgtcgtcgtcacgccggc 27223448 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcg 330 |||||| ||||||||||||||||| Sbjct: 20776457 gcgaggatggcgtcgtcgtcgtcg 20776480
>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 149022 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gcgaggctggcgtcgtcgtcgtcg 330 |||||| ||||||||||||||||| Sbjct: 148084 gcgaggatggcgtcgtcgtcgtcg 148107
>emb|AL831809.3|CNS08CAM Oryza sativa chromosome 12, . BAC OJ1268_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146585 Score = 40.1 bits (20), Expect = 4.7 Identities = 25/27 (92%) Strand = Plus / Minus Query: 317 cgtcgtcgtcgtcgncgtcaagccggc 343 |||||||||||||| ||||| |||||| Sbjct: 110906 cgtcgtcgtcgtcgtcgtcacgccggc 110880 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,310,977 Number of Sequences: 3902068 Number of extensions: 2310977 Number of successful extensions: 89556 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87459 Number of HSP's gapped (non-prelim): 1954 length of query: 353 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 331 effective length of database: 17,147,199,772 effective search space: 5675723124532 effective search space used: 5675723124532 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)