>NVL_HUMAN (O15381) Nuclear valosin-containing protein-like (Nuclear VCP-like|
           protein) (NVLp)
          Length = 856

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 99  RKGDPTCMGRVPEITVRTTSSSSPPECTRTHGVPAVT 209
           RKG+P  +   PE+  R T+SS+P   ++T  +P  T
Sbjct: 128 RKGNPDSVSNTPEMEQRETTSSTPRISSKTGSIPLKT 164

>SSG1_ORYSA (P19395) Granule-bound starch synthase 1, chloroplast precursor (EC|
           2.4.1.242) (Granule-bound starch synthase I) (GBSS-I)
          Length = 609

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -3

Query: 217 IENVTAGTPCVLVHSGGDEEDVVRTVISGTRPMHVGSPLRGYGRTLCDCAAVAASTTRK 41
           ++ +  GTPC    +GG    +V TVI G    H+       GR   DC  V  S  +K
Sbjct: 492 LQGMRYGTPCACASTGG----LVDTVIEGKTGFHM-------GRLSVDCKVVEPSDVKK 539

>SSG1_HORVU (P09842) Granule-bound starch synthase 1, chloroplast precursor (EC|
           2.4.1.242) (Granule-bound starch synthase I) (GBSS-I)
          Length = 603

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -3

Query: 217 IENVTAGTPCVLVHSGGDEEDVVRTVISGTRPMHVGSPLRGYGRTLCDCAAVAASTTRKK 38
           ++ +  GTPCV   +GG    +V T++ G    H+       GR   DC  V  +  +K 
Sbjct: 486 LQGMRYGTPCVCASTGG----LVDTIVEGKTGFHM-------GRLSVDCNVVEPADVKKV 534

Query: 37  VDAL 26
              L
Sbjct: 535 ATTL 538

>SSG1_WHEAT (P27736) Granule-bound starch synthase 1, chloroplast precursor (EC|
           2.4.1.242) (Granule-bound starch synthase I) (GBSS-I)
          Length = 615

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -3

Query: 217 IENVTAGTPCVLVHSGGDEEDVVRTVISGTRPMHVGSPLRGYGRTLCDCAAVAASTTRKK 38
           ++ +  GTPC    +GG    +V T++ G    H+       GR   DC  V  +  +K 
Sbjct: 498 LQGMRYGTPCACASTGG----LVDTIVEGKTGFHM-------GRLSVDCNVVEPADVKKV 546

Query: 37  VDAL 26
           V  L
Sbjct: 547 VTTL 550

>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3|
          Length = 299

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 63  TAAQSHKVRPYPRKGDPTCMGRVPEITVRTTSSSSPPECTRTHGVPAVTFSIGG 224
           TA ++  V   P    P      P     TT+++ PP  T   G   VT+S+ G
Sbjct: 167 TATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTG 220

>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3|
          Length = 299

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 63  TAAQSHKVRPYPRKGDPTCMGRVPEITVRTTSSSSPPECTRTHGVPAVTFSIGG 224
           TA ++  V   P    P      P     TT+++ PP  T   G   VT+S+ G
Sbjct: 167 TATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTG 220

>SSG1_SORBI (Q43134) Granule-bound starch synthase 1, chloroplast precursor (EC|
           2.4.1.242) (Granule-bound starch synthase I) (GBSS-I)
          Length = 608

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -3

Query: 217 IENVTAGTPCVLVHSGGDEEDVVRTVISGTRPMHVGSPLRGYGRTLCDCAAVAASTTRKK 38
           ++ +  GTPC    +GG    +V T+I G    H+       GR   DC  V  +  +K 
Sbjct: 491 LQGMRYGTPCACASTGG----LVDTIIEGKTGFHM-------GRLSVDCNVVEPADVKKV 539

Query: 37  VDAL 26
              L
Sbjct: 540 ATTL 543

>SSG1_MAIZE (P04713) Granule-bound starch synthase 1, chloroplast precursor (EC|
           2.4.1.242) (Granule-bound starch synthase I) (GBSS-I)
          Length = 605

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -3

Query: 217 IENVTAGTPCVLVHSGGDEEDVVRTVISGTRPMHVGSPLRGYGRTLCDCAAVAASTTRKK 38
           ++ +  GTPC    +GG    +V T+I G    H+       GR   DC  V  +  +K 
Sbjct: 488 LQGMRYGTPCACASTGG----LVDTIIEGKTGFHM-------GRLSVDCNVVEPADVKKV 536

Query: 37  VDAL 26
              L
Sbjct: 537 ATTL 540

>PPNK2_SYNPX (Q7U406) Probable inorganic polyphosphate/ATP-NAD kinase 2 (EC|
           2.7.1.23) (Poly(P)/ATP NAD kinase 2)
          Length = 316

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = +3

Query: 54  DAATAAQSHKVRPYPRKGDPTCMGRVPEITVRTTSSSSPPECTR---THGVPAVTFSIGG 224
           +  TA    +V P+P  G      ++P++ V      +     R    H +P ++ ++GG
Sbjct: 34  EVTTAMSGARVNPFP--GLLATQEQLPDLAVVLGGDGTVLGAARHLAVHDIPILSINVGG 91

Query: 225 YTGNIFHD 248
           + G + HD
Sbjct: 92  HLGFLTHD 99

>HDAC4_CHICK (P83038) Histone deacetylase 4 (HD4)|
          Length = 1080

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = -3

Query: 385 GAWRESSRRSLSYLTSHQGATFAMTSCTSPRYRCTVL*SGTSTSEKSWKMLPVY--PPIE 212
           G+   S   S + +++  G T ++TS  +     T L       E S   LP+Y  P + 
Sbjct: 296 GSGPSSPNNSSNNISAENGITGSVTSIQAE----TSLAHRLVNREGSVTQLPLYTSPSLP 351

Query: 211 NVTAGTPCVLVHSGGD-EEDVVRTVI 137
           N+T G P     SGG  ++D  R  I
Sbjct: 352 NITLGLPATGPSSGGSAQQDAERLAI 377

>SSG1_ORYGL (Q42968) Granule-bound starch synthase 1, chloroplast precursor (EC|
           2.4.1.242) (Granule-bound starch synthase I) (GBSS-I)
          Length = 609

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 217 IENVTAGTPCVLVHSGGDEEDVVRTVISGTRPMHVGSPLRGYGRTLCDCAAVAASTTRK 41
           ++ +  GTPC    +GG    +V TVI G    H+       GR   +C  V  S  +K
Sbjct: 492 LQGMRYGTPCACASTGG----LVDTVIEGKTGFHM-------GRLSVNCKVVEPSDVKK 539

>R1B11_SOLDE (Q6L3Y2) Putative late blight resistance protein homolog R1B-11|
          Length = 1252

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
 Frame = -3

Query: 322 FAMTSCTSPRYRCT-----VL*SGTSTSEKSWKMLPVY 224
           F  + C  P+YRCT     VL   +  +   W  LPVY
Sbjct: 324 FVSSKCIEPQYRCTTFYTLVLIEASHNAMVVWLHLPVY 361

>DYHC_DICDI (P34036) Dynein heavy chain, cytosolic (DYHC)|
          Length = 4725

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 303  VQLVMANVAPWWLVKYDKLLRELSRHAPFDL 395
            V L   ++AP WLV+ +K L  LS H  F L
Sbjct: 4180 VLLKNIHLAPQWLVQLEKKLHSLSPHPSFRL 4210

>TRPM2_MOUSE (Q91YD4) Transient receptor potential cation channel subfamily M|
           member 2 (EC 3.6.1.13) (Long transient receptor
           potential channel 2) (LTrpC2) (LTrpC-2) (Transient
           receptor potential channel 7) (TrpC7)
          Length = 1507

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 18/49 (36%), Positives = 22/49 (44%)
 Frame = -3

Query: 286 CTVL*SGTSTSEKSWKMLPVYPPIENVTAGTPCVLVHSGGDEEDVVRTV 140
           C VL  G  T      +  +Y  I N   GTPCV+V   G   DV+  V
Sbjct: 326 CVVLEGGPGT------LHTIYNAINN---GTPCVIVEGSGRVADVIAQV 365

>KLDC5_HUMAN (Q9P2K6) Kelch domain-containing protein 5|
          Length = 505

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +3

Query: 90  PYPRKGDPTCMGRVPEITVR--TTSSSSPPECTRTHGVPAV-----TFSIGGY 227
           P+P +G+P  M R  E+T R    +++ PP+     G  +       F +GGY
Sbjct: 209 PHPYQGEPPSMLRYEEMTERWFPLANNLPPDLVNVRGYGSAILDNYLFIVGGY 261

>DYHC_HUMAN (Q14204) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4646

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 303  VQLVMANVAPWWLVKYDKLLRELSRHAPFDL 395
            V L   ++AP WL++ +K L  L  HA F L
Sbjct: 4094 VMLKNVHLAPGWLMQLEKKLHSLQPHACFRL 4124

>BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 precursor|
          Length = 1522

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
 Frame = -3

Query: 388 NGAWRESSRRSLSYLTSHQGATFAMTSCTSPRYRCTVL*SGTSTSEK--SWKMLPVYPPI 215
           +G W E S  SL   T  +G      SCT P+Y       G  T  K  +  + PV    
Sbjct: 345 HGVWEEWSPWSLCSFTCGRGQRTRTRSCTPPQYGGRPC-EGPETHHKPCNIALCPVDGQW 403

Query: 214 ENVTAGTPCVLVHSGGDEEDVVRTVISGTRPMHVGSPLRG 95
           +  ++ + C +  S G ++   +     T   H GS  RG
Sbjct: 404 QEWSSWSQCSVTCSNGTQQRSRQC----TAAAHGGSECRG 439

>DYHC_RAT (P38650) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1) (MAP 1C)
          Length = 4644

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 303  VQLVMANVAPWWLVKYDKLLRELSRHAPFDL 395
            V L   ++AP WL++ +K L  L  HA F L
Sbjct: 4092 VMLKNVHLAPGWLMQLEKKLHSLQPHACFRL 4122

>DYHC_MOUSE (Q9JHU4) Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein|
            heavy chain 1) (DHC1) (Dynein heavy chain 1, cytoplasmic
            1)
          Length = 4644

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 303  VQLVMANVAPWWLVKYDKLLRELSRHAPFDL 395
            V L   ++AP WL++ +K L  L  HA F L
Sbjct: 4092 VMLKNVHLAPGWLMQLEKKLHSLQPHACFRL 4122

>CABIN_HUMAN (Q9Y6J0) Calcineurin-binding protein Cabin 1 (Calcineurin inhibitor)|
            (CAIN)
          Length = 2220

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 11/50 (22%), Positives = 24/50 (48%)
 Frame = +3

Query: 57   AATAAQSHKVRPYPRKGDPTCMGRVPEITVRTTSSSSPPECTRTHGVPAV 206
            +A   + H  +P P +     +  +P++ + + ++  PPE T T   P +
Sbjct: 2108 SAQPPEGHPGKPEPSRAKSRPLPNMPKLVIPSAATKFPPEITVTPPTPTL 2157

>SALL2_MOUSE (Q9QX96) Sal-like protein 2 (Spalt-like protein 2) (MSal-2)|
          Length = 1004

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 27   NASTFFLVVDAATAAQSHKVRPYPRKGDPT 116
            N +T  LV   +++  S  + P+PRK DPT
Sbjct: 973  NIATLSLVPGCSSSIPSPGLSPFPRKDDPT 1002

>GGT_SYNY3 (P74181) Gamma-glutamyltranspeptidase precursor (EC 2.3.2.2)|
           [Contains: Gamma-glutamyltransferase large chain;
           Gamma-glutamyltransferase small chain]
          Length = 518

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = +3

Query: 198 PAVTFSIGGYTGNIFHDFSDVLVPLYNTV----HRYRGDVQLVMANVAPWWLVKYDKLLR 365
           PAV ++  G+T N F+DF++ L+    T      ++      ++      +L ++  +L 
Sbjct: 135 PAVAYARQGFTLNRFNDFTNGLLEPILTQQEEGRKFYAPQGKILRQGEKAYLPQFADVLE 194

Query: 366 ELSRHAP 386
           +L+RH P
Sbjct: 195 QLARHGP 201

>CO3_NAJKA (Q91132) Cobra venom factor precursor (CVF) (Complement C3 homolog)|
           [Contains: Cobra venom factor alpha chain; Cobra venom
           factor gamma chain; Cobra venom factor beta chain]
          Length = 1642

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 138 ITVRTTSSSSPPECTRTHGVPAVTFSIGGYTGNIFH 245
           ITVRT     P E   T  + A+ +   G +GN  H
Sbjct: 411 ITVRTNHGDLPRERQATKSMTAIAYQTQGGSGNYLH 446


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,272,577
Number of Sequences: 219361
Number of extensions: 758446
Number of successful extensions: 2758
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2755
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)