ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet94d04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF525024.1| Hordeum vulgare subsp. vulgare HGA6 (HGA6) gene, complete cds Length = 2692 Score = 706 bits (356), Expect = 0.0 Identities = 390/399 (97%), Gaps = 3/399 (0%) Strand = Plus / Plus Query: 4 ccggcgacatccgcatggacgccaacgcgtcaaccttcttcctggtcgtcgacgccgcca 63 |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 1611 ccggtgacatccgcatggacgccaacgcgtcaaccttcttcctggtagtcgacgccgcca 1670 Query: 64 cggccgcgcagtcgcacaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgg 123 |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1671 cggccgcg-agtc--acaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgg 1727 Query: 124 gccgcgtgcccgagatcaccgtgcgcaccacgtcctcctcgtcgccgcctgagtgcacta 183 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | Sbjct: 1728 gccgcgtgcccgagatcaccatgcgcaccacgtcctcctcgtcgccgcctgagtgcacca 1787 Query: 184 ggacgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaacatcttcc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1788 ggacgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaacatcttcc 1847 Query: 244 acgacttctctgacgtgctcgtcccgctctacaacacggtgcaccggtaccgcggcgatg 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1848 acgacttctctgacgtgctcgtcccgctctacaacacggtgcaccggtaccgcggcgacg 1907 Query: 304 tgcagctggtcatggcgaacgtggcgccctggtggctggtcaagtacgacaagctcctcc 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1908 tgcagctggtcatggcgaacgtggcgccctggtggctggtcaagtacgacaagctcctcc 1967 Query: 364 gcgagctctcccgccacgcgccgttcgacctcgccgcgg 402 ||||||||||||||||||||||| ||||||||||||||| Sbjct: 1968 gcgagctctcccgccacgcgccgctcgacctcgccgcgg 2006
>ref|XM_549935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1569 Score = 246 bits (124), Expect = 5e-62 Identities = 190/212 (89%) Strand = Plus / Plus Query: 187 cgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaacatcttccacg 246 |||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 647 cgcacgacgtgcccgccgtggcgttctccatcggcgggtacacgggcaacatcttccacg 706 Query: 247 acttctctgacgtgctcgtcccgctctacaacacggtgcaccggtaccgcggcgatgtgc 306 ||||||| |||||| |||| ||||| |||||||| ||||| || |||||||||| |||| Sbjct: 707 acttctccgacgtgatcgtgccgctgtacaacaccgtgcagcgctaccgcggcggggtgc 766 Query: 307 agctggtcatggcgaacgtggcgccctggtggctggtcaagtacgacaagctcctccgcg 366 ||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||||||| Sbjct: 767 agctggtgatggtgaacgtggcgtcgtggtggctcgtcaagtacgacaagctcctccgcg 826 Query: 367 agctctcccgccacgcgccgttcgacctcgcc 398 |||| || |||||||||||| ||||||||||| Sbjct: 827 agctgtcgcgccacgcgccgatcgacctcgcc 858 Score = 99.6 bits (50), Expect = 7e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 74 gtcgcacaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcc 133 ||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| | Sbjct: 531 gtcgcacaaggtgcggccgtacccgcggaagggcgacgcgacgtgcatggggcgcgtcac 590 Query: 134 cgagatcaccgtgcgcaccacg 155 ||||||||||||||| ||||| Sbjct: 591 ggagatcaccgtgcgcgccacg 612
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 246 bits (124), Expect = 5e-62 Identities = 190/212 (89%) Strand = Plus / Minus Query: 187 cgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaacatcttccacg 246 |||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 1057325 cgcacgacgtgcccgccgtggcgttctccatcggcgggtacacgggcaacatcttccacg 1057266 Query: 247 acttctctgacgtgctcgtcccgctctacaacacggtgcaccggtaccgcggcgatgtgc 306 ||||||| |||||| |||| ||||| |||||||| ||||| || |||||||||| |||| Sbjct: 1057265 acttctccgacgtgatcgtgccgctgtacaacaccgtgcagcgctaccgcggcggggtgc 1057206 Query: 307 agctggtcatggcgaacgtggcgccctggtggctggtcaagtacgacaagctcctccgcg 366 ||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||||||| Sbjct: 1057205 agctggtgatggtgaacgtggcgtcgtggtggctcgtcaagtacgacaagctcctccgcg 1057146 Query: 367 agctctcccgccacgcgccgttcgacctcgcc 398 |||| || |||||||||||| ||||||||||| Sbjct: 1057145 agctgtcgcgccacgcgccgatcgacctcgcc 1057114 Score = 99.6 bits (50), Expect = 7e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 74 gtcgcacaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcc 133 ||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| | Sbjct: 1057441 gtcgcacaaggtgcggccgtacccgcggaagggcgacgcgacgtgcatggggcgcgtcac 1057382 Query: 134 cgagatcaccgtgcgcaccacg 155 ||||||||||||||| ||||| Sbjct: 1057381 ggagatcaccgtgcgcgccacg 1057360 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 cacgacttctctgacgtgctcgtcccgct 271 ||||||||||| ||||||||| ||||||| Sbjct: 1072309 cacgacttctccgacgtgctcatcccgct 1072281 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gccgtacccgcgcaagggcgaccc 112 ||||||||||||||||| |||||| Sbjct: 1090247 gccgtacccgcgcaaggccgaccc 1090224
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0494A10 Length = 145576 Score = 246 bits (124), Expect = 5e-62 Identities = 190/212 (89%) Strand = Plus / Minus Query: 187 cgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaacatcttccacg 246 |||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 94993 cgcacgacgtgcccgccgtggcgttctccatcggcgggtacacgggcaacatcttccacg 94934 Query: 247 acttctctgacgtgctcgtcccgctctacaacacggtgcaccggtaccgcggcgatgtgc 306 ||||||| |||||| |||| ||||| |||||||| ||||| || |||||||||| |||| Sbjct: 94933 acttctccgacgtgatcgtgccgctgtacaacaccgtgcagcgctaccgcggcggggtgc 94874 Query: 307 agctggtcatggcgaacgtggcgccctggtggctggtcaagtacgacaagctcctccgcg 366 ||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||||||| Sbjct: 94873 agctggtgatggtgaacgtggcgtcgtggtggctcgtcaagtacgacaagctcctccgcg 94814 Query: 367 agctctcccgccacgcgccgttcgacctcgcc 398 |||| || |||||||||||| ||||||||||| Sbjct: 94813 agctgtcgcgccacgcgccgatcgacctcgcc 94782 Score = 99.6 bits (50), Expect = 7e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 74 gtcgcacaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcc 133 ||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| | Sbjct: 95109 gtcgcacaaggtgcggccgtacccgcggaagggcgacgcgacgtgcatggggcgcgtcac 95050 Query: 134 cgagatcaccgtgcgcaccacg 155 ||||||||||||||| ||||| Sbjct: 95049 ggagatcaccgtgcgcgccacg 95028 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 cacgacttctctgacgtgctcgtcccgct 271 ||||||||||| ||||||||| ||||||| Sbjct: 109977 cacgacttctccgacgtgctcatcccgct 109949 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gccgtacccgcgcaagggcgaccc 112 ||||||||||||||||| |||||| Sbjct: 127915 gccgtacccgcgcaaggccgaccc 127892
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 246 bits (124), Expect = 5e-62 Identities = 190/212 (89%) Strand = Plus / Minus Query: 187 cgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaacatcttccacg 246 |||||| |||||| || ||| ||||||| ||||||||||||||||||||||||||||||| Sbjct: 26639 cgcacgacgtgcccgccgtggcgttctccatcggcgggtacacgggcaacatcttccacg 26580 Query: 247 acttctctgacgtgctcgtcccgctctacaacacggtgcaccggtaccgcggcgatgtgc 306 ||||||| |||||| |||| ||||| |||||||| ||||| || |||||||||| |||| Sbjct: 26579 acttctccgacgtgatcgtgccgctgtacaacaccgtgcagcgctaccgcggcggggtgc 26520 Query: 307 agctggtcatggcgaacgtggcgccctggtggctggtcaagtacgacaagctcctccgcg 366 ||||||| |||| |||||||||| | |||||||| ||||||||||||||||||||||||| Sbjct: 26519 agctggtgatggtgaacgtggcgtcgtggtggctcgtcaagtacgacaagctcctccgcg 26460 Query: 367 agctctcccgccacgcgccgttcgacctcgcc 398 |||| || |||||||||||| ||||||||||| Sbjct: 26459 agctgtcgcgccacgcgccgatcgacctcgcc 26428 Score = 99.6 bits (50), Expect = 7e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 74 gtcgcacaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcc 133 ||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||| | Sbjct: 26755 gtcgcacaaggtgcggccgtacccgcggaagggcgacgcgacgtgcatggggcgcgtcac 26696 Query: 134 cgagatcaccgtgcgcaccacg 155 ||||||||||||||| ||||| Sbjct: 26695 ggagatcaccgtgcgcgccacg 26674 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 243 cacgacttctctgacgtgctcgtcccgct 271 ||||||||||| ||||||||| ||||||| Sbjct: 41623 cacgacttctccgacgtgctcatcccgct 41595 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 89 gccgtacccgcgcaagggcgaccc 112 ||||||||||||||||| |||||| Sbjct: 59561 gccgtacccgcgcaaggccgaccc 59538
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 89.7 bits (45), Expect = 7e-15 Identities = 90/105 (85%) Strand = Plus / Plus Query: 176 gtgcactaggacgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaa 235 |||||| | |||||||| | ||||||||| |||||||||| |||||||||||||||| Sbjct: 7667393 gtgcacgacgacgcacgcggcgccggcggtcgtgttctcgatcagcgggtacacgggcaa 7667452 Query: 236 catcttccacgacttctctgacgtgctcgtcccgctctacaacac 280 | | |||||||||||| | |||||| |||||||||| |||||||| Sbjct: 7667453 cctgttccacgacttcaccgacgtgatcgtcccgctgtacaacac 7667497 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 79 acaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcccgaga 138 ||||||| |||||||||||||| ||||||||| | ||| ||||||||||||| |||||| Sbjct: 7667293 acaaggtccggccgtacccgcggaagggcgacgccacgagcatgggccgcgtcaccgaga 7667352 Query: 139 tcaccgtgcgcac 151 |||| |||||||| Sbjct: 7667353 tcacggtgcgcac 7667365 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 3 gccggcgacatccgcatggacgccaacgc 31 ||||||||||||||||||||||||||||| Sbjct: 7667211 gccggcgacatccgcatggacgccaacgc 7667239
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 89.7 bits (45), Expect = 7e-15 Identities = 90/105 (85%) Strand = Plus / Plus Query: 176 gtgcactaggacgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaa 235 |||||| | |||||||| | ||||||||| |||||||||| |||||||||||||||| Sbjct: 7667274 gtgcacgacgacgcacgcggcgccggcggtcgtgttctcgatcagcgggtacacgggcaa 7667333 Query: 236 catcttccacgacttctctgacgtgctcgtcccgctctacaacac 280 | | |||||||||||| | |||||| |||||||||| |||||||| Sbjct: 7667334 cctgttccacgacttcaccgacgtgatcgtcccgctgtacaacac 7667378 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 79 acaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcccgaga 138 ||||||| |||||||||||||| ||||||||| | ||| ||||||||||||| |||||| Sbjct: 7667174 acaaggtccggccgtacccgcggaagggcgacgccacgagcatgggccgcgtcaccgaga 7667233 Query: 139 tcaccgtgcgcac 151 |||| |||||||| Sbjct: 7667234 tcacggtgcgcac 7667246 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 3 gccggcgacatccgcatggacgccaacgc 31 ||||||||||||||||||||||||||||| Sbjct: 7667092 gccggcgacatccgcatggacgccaacgc 7667120
>emb|AL732646.5|CNS08C9L Oryza sativa chromosome 12, . BAC OSJNBb0001P17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151024 Score = 89.7 bits (45), Expect = 7e-15 Identities = 90/105 (85%) Strand = Plus / Plus Query: 176 gtgcactaggacgcacggcgtgccggcggtgacgttctcgatcggcgggtacacgggcaa 235 |||||| | |||||||| | ||||||||| |||||||||| |||||||||||||||| Sbjct: 54786 gtgcacgacgacgcacgcggcgccggcggtcgtgttctcgatcagcgggtacacgggcaa 54845 Query: 236 catcttccacgacttctctgacgtgctcgtcccgctctacaacac 280 | | |||||||||||| | |||||| |||||||||| |||||||| Sbjct: 54846 cctgttccacgacttcaccgacgtgatcgtcccgctgtacaacac 54890 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 79 acaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcccgaga 138 ||||||| |||||||||||||| ||||||||| | ||| ||||||||||||| |||||| Sbjct: 54686 acaaggtccggccgtacccgcggaagggcgacgccacgagcatgggccgcgtcaccgaga 54745 Query: 139 tcaccgtgcgcac 151 |||| |||||||| Sbjct: 54746 tcacggtgcgcac 54758 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 3 gccggcgacatccgcatggacgccaacgc 31 ||||||||||||||||||||||||||||| Sbjct: 54604 gccggcgacatccgcatggacgccaacgc 54632
>dbj|AK109804.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-F10, full insert sequence Length = 1831 Score = 87.7 bits (44), Expect = 3e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 209 gttctcgatcggcgggtacacgggcaacatcttccacgacttctctgacgtgctcgtccc 268 |||||||||| ||||||||||||||||| | |||||||||||| | |||||| ||||||| Sbjct: 700 gttctcgatcagcgggtacacgggcaacctgttccacgacttcaccgacgtgatcgtccc 759 Query: 269 gctctacaacac 280 ||| |||||||| Sbjct: 760 gctgtacaacac 771 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 79 acaaggtgcggccgtacccgcgcaagggcgacccaacgtgcatgggccgcgtgcccgaga 138 ||||||| |||||||||||||| ||||||||| | ||| ||||||||||||| |||||| Sbjct: 612 acaaggtccggccgtacccgcggaagggcgacgccacgagcatgggccgcgtcaccgaga 671 Query: 139 tcaccgtgcgcac 151 |||| |||||||| Sbjct: 672 tcacggtgcgcac 684 Score = 58.0 bits (29), Expect = 2e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 3 gccggcgacatccgcatggacgccaacgc 31 ||||||||||||||||||||||||||||| Sbjct: 530 gccggcgacatccgcatggacgccaacgc 558
>emb|AJ867393.1| Triticum aestivum mRNA for glycosyltransferase (a2a gene) Length = 2129 Score = 60.0 bits (30), Expect = 6e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 225 tacacgggcaacatcttccacgacttctctgacgtgctcgtcccgctctacaacacgg 282 |||||||||||| |||||||||||||| | |||||| |||| ||||||| || ||||| Sbjct: 1034 tacacgggcaacctcttccacgacttcaccgacgtgatcgtgccgctcttcaccacgg 1091
>emb|AJ867404.1| Triticum aestivum partial mRNA for glycosyltransferase (a4 gene) Length = 1425 Score = 48.1 bits (24), Expect = 0.022 Identities = 45/52 (86%) Strand = Plus / Plus Query: 218 cggcgggtacacgggcaacatcttccacgacttctctgacgtgctcgtcccg 269 |||||||| ||| |||||| ||||||||||| | | ||||||||||||||| Sbjct: 413 cggcgggttcaccggcaaccccttccacgactacacggacgtgctcgtcccg 464
>ref|XM_474788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1653 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 243 cacgacttctctgacgtgctcgtcccgctct 273 ||||||||| | ||||||||||||||||||| Sbjct: 787 cacgacttcaccgacgtgctcgtcccgctct 817
>emb|AL607008.2|OSJN00119 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026E15, complete sequence Length = 137874 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 243 cacgacttctctgacgtgctcgtcccgctct 273 ||||||||| | ||||||||||||||||||| Sbjct: 113234 cacgacttcaccgacgtgctcgtcccgctct 113204
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Minus Query: 243 cacgacttctctgacgtgctcgtcccgctct 273 ||||||||| | ||||||||||||||||||| Sbjct: 6558986 cacgacttcaccgacgtgctcgtcccgctct 6558956
>dbj|AK121999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110G11, full insert sequence Length = 1768 Score = 46.1 bits (23), Expect = 0.088 Identities = 29/31 (93%) Strand = Plus / Plus Query: 243 cacgacttctctgacgtgctcgtcccgctct 273 ||||||||| | ||||||||||||||||||| Sbjct: 821 cacgacttcaccgacgtgctcgtcccgctct 851
>gb|AC107085.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1764_D01, complete sequence Length = 164709 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 192 ggcgtgccggcggtgacgttctcgatcggcgggtacac 229 ||||||||||||||| |||||||| ||||||||||| Sbjct: 52721 ggcgtgccggcggtggtgttctcgacgggcgggtacac 52684
>emb|X96558.1|LSLYSSYNT Lysobacter sp. ATCC 53042 gene for lysobactin synthetase, strain ATCC 53042 Length = 4724 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 379 acgcgccgttcgacctcgccgc 400 |||||||||||||||||||||| Sbjct: 3386 acgcgccgttcgacctcgccgc 3407
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Minus Query: 192 ggcgtgccggcggtgacgttctcgatcggcgggtacac 229 ||||||||||||||| |||||||| ||||||||||| Sbjct: 18885343 ggcgtgccggcggtggtgttctcgacgggcgggtacac 18885306
>dbj|AK110377.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-165-C08, full insert sequence Length = 2609 Score = 44.1 bits (22), Expect = 0.35 Identities = 34/38 (89%) Strand = Plus / Plus Query: 192 ggcgtgccggcggtgacgttctcgatcggcgggtacac 229 ||||||||||||||| |||||||| ||||||||||| Sbjct: 1025 ggcgtgccggcggtggtgttctcgacgggcgggtacac 1062
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 374 ccgccacgcgccgttcgacctcgccgcgg 402 |||||||||||||||||| |||| ||||| Sbjct: 551395 ccgccacgcgccgttcgaactcggcgcgg 551423
>ref|NM_184125.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2089 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 243 cacgacttctctgacgtgctcgtcccgct 271 ||||||||||| ||||||||| ||||||| Sbjct: 742 cacgacttctccgacgtgctcatcccgct 770
>ref|XM_466283.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1575 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 cacgtcctcctcgtcgccgcc 172 ||||||||||||||||||||| Sbjct: 1506 cacgtcctcctcgtcgccgcc 1486
>ref|XM_465240.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1890 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 1012 ccgtgctcaccacgtcgtcctcgtcgccg 984
>ref|XM_507475.1| PREDICTED Oryza sativa (japonica cultivar-group), P0572D06.2 mRNA Length = 2167 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 1250 ccgtgctcaccacgtcgtcctcgtcgccg 1222
>ref|XM_506788.2| PREDICTED Oryza sativa (japonica cultivar-group), P0572D06.2 mRNA Length = 2830 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 1464 ccgtgctcaccacgtcgtcctcgtcgccg 1436
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 cacgtcctcctcgtcgccgcc 172 ||||||||||||||||||||| Sbjct: 21456011 cacgtcctcctcgtcgccgcc 21456031 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 12503770 ccgtgctcaccacgtcgtcctcgtcgccg 12503798 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 cgggtacacgggcaacatcttccacgac 248 ||||||||||| |||| ||||||||||| Sbjct: 13368322 cgggtacacggacaacttcttccacgac 13368349
>dbj|AP004865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0020C11 Length = 163328 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 cacgtcctcctcgtcgccgcc 172 ||||||||||||||||||||| Sbjct: 50938 cacgtcctcctcgtcgccgcc 50958
>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0572D06 Length = 148920 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 8303 ccgtgctcaccacgtcgtcctcgtcgccg 8331
>dbj|AK107002.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C10, full insert sequence Length = 2167 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 1250 ccgtgctcaccacgtcgtcctcgtcgccg 1222
>dbj|AK106848.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A09, full insert sequence Length = 2830 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 1464 ccgtgctcaccacgtcgtcctcgtcgccg 1436
>dbj|AK102703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033103O07, full insert sequence Length = 1890 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 ccgtgcgcaccacgtcctcctcgtcgccg 170 |||||| ||||||||| |||||||||||| Sbjct: 1012 ccgtgctcaccacgtcgtcctcgtcgccg 984
>dbj|AK070385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054L18, full insert sequence Length = 2091 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 243 cacgacttctctgacgtgctcgtcccgct 271 ||||||||||| ||||||||| ||||||| Sbjct: 743 cacgacttctccgacgtgctcatcccgct 771
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 66 gccgcgcagtcgcacaaggtgcggc 90 ||||||| ||||||||||||||||| Sbjct: 2372970 gccgcgccgtcgcacaaggtgcggc 2372994
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 148 gcaccacgtcctcctcgtcgccgcc 172 |||||||||||||||||||| |||| Sbjct: 514441 gcaccacgtcctcctcgtcggcgcc 514417
>ref|XM_549937.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2103 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 89 gccgtacccgcgcaagggcgaccc 112 ||||||||||||||||| |||||| Sbjct: 1050 gccgtacccgcgcaaggccgaccc 1073
>ref|XM_465315.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2113 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 cgggtacacgggcaacatcttccacgac 248 ||||||||||| |||| ||||||||||| Sbjct: 919 cgggtacacggacaacttcttccacgac 946
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ggccgcgtgcccgagatcac 142 |||||||||||||||||||| Sbjct: 699167 ggccgcgtgcccgagatcac 699148
>ref|NM_213781.1| Sus scrofa stearoyl-CoA desaturase (SCD), mRNA Length = 5134 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcccgagatcaccgtgcgcaccac 154 ||||||||||||||||| |||||| Sbjct: 636 gcccgagatcaccgtgcccaccac 659
>ref|XM_469311.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3168 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 cgacgccgccacggccgcgc 72 |||||||||||||||||||| Sbjct: 211 cgacgccgccacggccgcgc 192
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tcgacgccgccacggccgcg 71 |||||||||||||||||||| Sbjct: 3401928 tcgacgccgccacggccgcg 3401909
>gb|AY487830.1| Sus scrofa stearoyl-CoA desaturase (SCD) gene, exons 1 through 6 and complete cds Length = 20985 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcccgagatcaccgtgcgcaccac 154 ||||||||||||||||| |||||| Sbjct: 9580 gcccgagatcaccgtgcccaccac 9603
>ref|XM_359815.1| Magnaporthe grisea 70-15 hypothetical protein (MG04962.4) partial mRNA Length = 1917 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 cggcgatgtgcagctggtcatggc 319 ||||||||||||||||| |||||| Sbjct: 450 cggcgatgtgcagctggccatggc 473
>gb|AY368187.1| Sus scrofa stearoyl-CoA desaturase gene, exons 3, 4 and partial cds Length = 1475 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcccgagatcaccgtgcgcaccac 154 ||||||||||||||||| |||||| Sbjct: 1440 gcccgagatcaccgtgcccaccac 1463
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tcgacgccgccacggccgcg 71 |||||||||||||||||||| Sbjct: 441015 tcgacgccgccacggccgcg 440996
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 cgacgccgccacggccgcgc 72 |||||||||||||||||||| Sbjct: 26869888 cgacgccgccacggccgcgc 26869907
>ref|XM_543968.2| PREDICTED: Canis familiaris similar to Acyl-CoA desaturase (Stearoyl-CoA desaturase) (Fatty acid desaturase) (Delta(9)-desaturase) (LOC486839), mRNA Length = 5114 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcccgagatcaccgtgcgcaccac 154 ||||||||||||||||| |||||| Sbjct: 626 gcccgagatcaccgtgcccaccac 649
>gb|AC087412.14| Oryza sativa chromosome 3 BAC OSJNBb0070O09 genomic sequence, complete sequence Length = 149303 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 cgacgccgccacggccgcgc 72 |||||||||||||||||||| Sbjct: 48888 cgacgccgccacggccgcgc 48907
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cgtggcgccctggtggctgg 342 |||||||||||||||||||| Sbjct: 267734 cgtggcgccctggtggctgg 267715
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 cgtggcgccctggtggctgg 342 |||||||||||||||||||| Sbjct: 186685 cgtggcgccctggtggctgg 186666
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 cgtggcgccctggtggctgg 342 |||||||||||||||||||| Sbjct: 273062 cgtggcgccctggtggctgg 273081
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tcgacgccgccacggccgcg 71 |||||||||||||||||||| Sbjct: 250865 tcgacgccgccacggccgcg 250846
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 accgtgcgcaccacgtcctc 160 |||||||||||||||||||| Sbjct: 428733 accgtgcgcaccacgtcctc 428752
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 191 cggcgtgccggcggtgacgttctc 214 ||||||||| |||||||||||||| Sbjct: 1424317 cggcgtgcctgcggtgacgttctc 1424294
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tcctggtcgtcgacgccgcc 62 |||||||||||||||||||| Sbjct: 3763465 tcctggtcgtcgacgccgcc 3763446
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 cgacaagctcctccgcgagctctc 373 ||||||||||||| |||||||||| Sbjct: 27364517 cgacaagctcctctgcgagctctc 27364494
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 cgacgccgccacggccgcgc 72 |||||||||||||||||||| Sbjct: 26961211 cgacgccgccacggccgcgc 26961230
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 56 cgccgccacggccgcgcagtcgca 79 ||||||||| |||||||||||||| Sbjct: 2909008 cgccgccaccgccgcgcagtcgca 2909031
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 caccacgtcctcctcgtcgc 168 |||||||||||||||||||| Sbjct: 63180 caccacgtcctcctcgtcgc 63199
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gcgacccaacgtgcatgggc 125 |||||||||||||||||||| Sbjct: 4986337 gcgacccaacgtgcatgggc 4986318
>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1521_G01 Length = 144102 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 cgggtacacgggcaacatcttccacgac 248 ||||||||||| |||| ||||||||||| Sbjct: 93573 cgggtacacggacaacttcttccacgac 93600
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 350 cgacaagctcctccgcgagctctc 373 ||||||||||||| |||||||||| Sbjct: 66044 cgacaagctcctctgcgagctctc 66021
>dbj|AK070014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038E13, full insert sequence Length = 2112 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 221 cgggtacacgggcaacatcttccacgac 248 ||||||||||| |||| ||||||||||| Sbjct: 919 cgggtacacggacaacttcttccacgac 946
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 caagctcctccgcgagctctcccg 376 |||||| ||||||||||||||||| Sbjct: 212766 caagcttctccgcgagctctcccg 212789
>gb|AY487829.1| Sus scrofa stearoyl-CoA desaturase (SCD) mRNA, complete cds Length = 5134 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcccgagatcaccgtgcgcaccac 154 ||||||||||||||||| |||||| Sbjct: 636 gcccgagatcaccgtgcccaccac 659
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tgggccgcgtgcccgagatc 140 |||||||||||||||||||| Sbjct: 430485 tgggccgcgtgcccgagatc 430466
>emb|Z97186.1|SSSCADP Sus scrofa mRNA for stearyl-CoA desaturase, partial Length = 1003 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gcccgagatcaccgtgcgcaccac 154 ||||||||||||||||| |||||| Sbjct: 428 gcccgagatcaccgtgcccaccac 451 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,972,060 Number of Sequences: 3902068 Number of extensions: 1972060 Number of successful extensions: 45993 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43938 Number of HSP's gapped (non-prelim): 2053 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
