ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet94b11 |
|---|---|
| Clone Library Name | barley_pub |
>HMIN_DROME (P05527) Homeobox protein invected| Length = 576 Score = 32.7 bits (73), Expect = 0.40 Identities = 16/31 (51%), Positives = 18/31 (58%) Frame = -1 Query: 181 ARLQLDVDGAEPGQPHHPRQQRLLRLDQVHH 89 A+L G PG HP QQ LL+ DQVHH Sbjct: 228 AQLTATALGLGPGGAVHPHQQLLLQRDQVHH 258
>BCHO_RHOCA (P26174) Magnesium-chelatase 30 kDa subunit (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase) Length = 284 Score = 32.0 bits (71), Expect = 0.68 Identities = 16/40 (40%), Positives = 24/40 (60%) Frame = +2 Query: 311 GPESKPNVVLIHGFAAEGNVTFQFNFGVLVSRYNVYIPDL 430 GP P ++L+HG A G+ +F+ L +RY V +PDL Sbjct: 32 GPADGPVLLLLHGLGASGH-SFRKMIPGLSARYRVIVPDL 70
>BIOF_HELPY (O25320) 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (AONS)| (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase) (7-KAP synthetase) (L-alanine--pimelyl CoA ligase) Length = 373 Score = 30.4 bits (67), Expect = 2.0 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = +2 Query: 68 HAQITSKMVNLIEAQKPLLTGMMRLAGLRPIDVELEPGTTMHVWAPKHHAGKKGTTISPH 247 HA++ ++ NL+ + LL G L L ID L + + A H +G T I P+ Sbjct: 71 HAELEERLANLLGFESALLVGSGFLGNLALIDTLLVKNALLFMDAHYHASGIFSTKIKPN 130
>RNFA_RHOCA (Q07396) Electron transport complex protein rnfA (Nitrogen fixation| protein rnfA) Length = 193 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/35 (45%), Positives = 24/35 (68%) Frame = -2 Query: 141 SLIIPVSSGFCASIKFTILLVIWAWLRTCVAACNV 37 SL + SGF AS+ FT++LVI+A +R +A +V Sbjct: 129 SLAMSTLSGFGASVGFTLVLVIFAGMRERLAQLSV 163
>TFE3_HUMAN (P19532) Transcription factor E3| Length = 743 Score = 30.0 bits (66), Expect = 2.6 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +3 Query: 144 PGSAPSTSSWSRAPPCTSGLPSTTPARK 227 P +A + S+W R+P S LP T P RK Sbjct: 562 PAAAAAASAWKRSPDQASPLPWTFPPRK 589
>LNT_PROMM (Q7V8K1) Apolipoprotein N-acyltransferase (EC 2.3.1.-) (ALP| N-acyltransferase) Length = 499 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -2 Query: 147 PASLIIPVSSG---FCASIKFTILLVIWAWLRTCVAACNVVELHVAARV 10 PA L +PV++ FC + +L+ +WAWL T +A E + A++ Sbjct: 75 PAPLSVPVAASIWLFCGAAA-AVLVGLWAWLGTSIAHLATREAGIRAQL 122
>NMBR_HUMAN (P28336) Neuromedin-B receptor (NMB-R) (Neuromedin-B-preferring| bombesin receptor) Length = 390 Score = 29.3 bits (64), Expect = 4.4 Identities = 18/63 (28%), Positives = 27/63 (42%) Frame = -2 Query: 225 FLPAWCLGAQTCMVVPGSSSTSMGRSPASLIIPVSSGFCASIKFTILLVIWAWLRTCVAA 46 F W G C ++P TS+G S +L + + A + + A LRTCV A Sbjct: 105 FFDEWMFGKVGCKLIPVIQLTSVGVSVFTLTALSADRYRAIVNPMDMQTSGALLRTCVKA 164 Query: 45 CNV 37 + Sbjct: 165 MGI 167
>OSTD_YEAST (Q02795) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase delta subunit precursor (EC 2.4.1.119) (Oligosaccharyl transferase delta subunit) Length = 286 Score = 29.3 bits (64), Expect = 4.4 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = -2 Query: 147 PASLIIPVSSGFCASIKFTILLVIWAWLRTCVAACNVVELHVAA 16 P + P++ F I TIL +I WL +C AA N + V A Sbjct: 188 PKRVAKPIAVIFVLIIFITILSLIVTWLNSCAAAFNNIPTGVTA 231
>ALF1_CHLPN (Q9Z8Q7) Probable fructose-bisphosphate aldolase class 1 (EC| 4.1.2.13) (Probable fructose-bisphosphate aldolase class I) (FBP aldolase) Length = 349 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -2 Query: 135 IIPVSSGFCASIKFTILLVIWAWLRTCVAACNVVELHVAA 16 I+ VS+ F + + V+W +LR N V+ H AA Sbjct: 179 IVAVSNAFAKARSLGLATVLWCYLRNPAFVANGVDYHTAA 218
>YIBG_ECOLI (P32106) Hypothetical protein yibG precursor (ORF-A3)| Length = 153 Score = 28.9 bits (63), Expect = 5.8 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +2 Query: 353 AAEGNVTFQFNFGVLVSRYN 412 A++GNVT QFN+GV +S N Sbjct: 85 ASQGNVTAQFNYGVFLSDTN 104
>NUP98_HUMAN (P52948) Nuclear pore complex protein Nup98-Nup96 precursor| [Contains: Nuclear pore complex protein Nup98 (Nucleoporin Nup98) (98 kDa nucleoporin); Nuclear pore complex protein Nup96 (Nucleoporin Nup96) (96 kDa nucleoporin)] Length = 1729 Score = 28.9 bits (63), Expect = 5.8 Identities = 13/22 (59%), Positives = 14/22 (63%) Frame = +3 Query: 156 PSTSSWSRAPPCTSGLPSTTPA 221 PSTSSWS PP TS +PA Sbjct: 1080 PSTSSWSVPPPLTSVFTMPSPA 1101
>YKZ1_YEAST (Q02209) Hypothetical 41.3 kDa protein in FOX2-YPT52 intergenic| region Length = 353 Score = 28.5 bits (62), Expect = 7.6 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +2 Query: 308 KGPESKPNVVLIHGFAAEGNV--TFQFNFGVLVSRYNVY 418 KGPESKPNV +H A + F+ F ++ Y + Sbjct: 276 KGPESKPNVNFMHSSATNDLIKSNFESYFKLMAEDYETF 314
>CC14B_HUMAN (O60729) Dual specificity protein phosphatase CDC14B (EC 3.1.3.48)| (EC 3.1.3.16) (CDC14 cell division cycle 14 homolog B) Length = 498 Score = 28.1 bits (61), Expect = 9.9 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 165 SSWSRAPPCTSGLPSTTPARK 227 SSW+ APPC+ ST+P K Sbjct: 9 SSWAAAPPCSRRCSSTSPGVK 29 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,984,710 Number of Sequences: 219361 Number of extensions: 855800 Number of successful extensions: 3162 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3049 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3161 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
