ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet94a10 |
|---|---|
| Clone Library Name | barley_pub |
>ORK1_DROME (Q94526) Open rectifier potassium channel protein 1 (Two pore| domain potassium channel Ork1) Length = 1001 Score = 32.3 bits (72), Expect = 0.66 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +2 Query: 188 RTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPP 289 R PP P+E + SL SGG + + + DG PP Sbjct: 599 RGPPPPFESNGSLASGGGGLTNMGFQMEDGATPP 632
>APE1_AERPE (O73942) Homing endonuclease I-ApeI (EC 3.1.-.-) (rRNA| intron-encoded homing endonuclease 1) Length = 222 Score = 32.0 bits (71), Expect = 0.87 Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +2 Query: 212 KSKSLGS--GGSMVARLKLKGIDGRAPPGVEPAA 307 KSK L G + KLKGI G AP GVEPAA Sbjct: 189 KSKKLNELLGRPLPGPSKLKGIGGGAPQGVEPAA 222
>PIPNB_RAT (P53812) Phosphatidylinositol transfer protein beta isoform (PtdIns| transfer protein beta) (PtdInsTP) (PI-TP-beta) Length = 270 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 3 GAFVFHSQR*NSWIYERRTTAKAFAKDVSLIKNESWGLED 122 G+ VFH + N++ Y R + KD IK E+W D Sbjct: 78 GSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPD 117
>PIPNB_MOUSE (P53811) Phosphatidylinositol transfer protein beta isoform (PtdIns| transfer protein beta) (PtdInsTP) (PI-TP-beta) Length = 270 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 3 GAFVFHSQR*NSWIYERRTTAKAFAKDVSLIKNESWGLED 122 G+ VFH + N++ Y R + KD IK E+W D Sbjct: 78 GSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPD 117
>PIPNB_HUMAN (P48739) Phosphatidylinositol transfer protein beta isoform (PtdIns| transfer protein beta) (PtdInsTP) (PI-TP-beta) Length = 270 Score = 29.3 bits (64), Expect = 5.6 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 3 GAFVFHSQR*NSWIYERRTTAKAFAKDVSLIKNESWGLED 122 G+ VFH + N++ Y R + KD IK E+W D Sbjct: 78 GSLVFHEKAWNAYPYCRTIVTNEYMKDDFFIKIETWHKPD 117
>AKT6_ARATH (Q8GXE6) Potassium channel AKT6 (Shaker pollen inward rectifier| K(+) channel) (Potassium channel SPIK) Length = 888 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/53 (35%), Positives = 26/53 (49%) Frame = +2 Query: 89 INQERKLGARRRSDTVLVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMV 247 ++Q+RKL R S ++S N AD G R+P P G GGSM+ Sbjct: 775 VSQKRKLNNFRNSLFGIISAANSADDGGE--VPRSPAVP-------GGGGSMI 818
>SCMH1_MOUSE (Q8K214) Polycomb protein SCMH1 (Sex comb on midleg homolog 1)| Length = 706 Score = 28.9 bits (63), Expect = 7.3 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Frame = +2 Query: 137 LVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA*FD 316 L+ T+N A+ + ++ PP+P +G +KL+ +D + P + PA Sbjct: 140 LLKTLNGAEMAPIKIFHKEPPSPSHNFFKMG--------MKLEAVDRKNPHFICPA---- 187 Query: 317 PTRGNLPGPDI-ARIDRLRALS*FYGWWC 400 T G + G ++ D R + +WC Sbjct: 188 -TIGEVRGAEVLVTFDGWRGA---FDYWC 212
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 28.9 bits (63), Expect = 7.3 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +2 Query: 224 LGSGGSMVARLKLKGIDGRAPPGVEPAA*FDPTRGNLPGP 343 L SG S+ L +G+D R PPG P P ++PGP Sbjct: 871 LSSGSSISEVLSAQGVDLRGPPG--PPGPRGPPGPSIPGP 908
>SLBP2_XENLA (Q9YGP6) Oocyte-specific histone RNA stem-loop-binding protein 2| Length = 250 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -3 Query: 316 VKLSRR-LHAWWCPSVNSFKFQPCDHTPPGTQRL 218 +KL RR LHAW PS NSF+ DH+ TQRL Sbjct: 160 IKLWRRDLHAWDPPSQNSFQE---DHSFKQTQRL 190
>PUR8_ECOLI (P0AB89) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)| (ASL) Length = 456 Score = 28.9 bits (63), Expect = 7.3 Identities = 21/56 (37%), Positives = 25/56 (44%) Frame = +2 Query: 203 PYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA*FDPTRGNLPGPDIARIDRLR 370 PYEK K L G + A + IDG A P E A T N G I +D L+ Sbjct: 401 PYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELK 456
>PUR8_ECOL6 (P0AB90) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)| (ASL) Length = 456 Score = 28.9 bits (63), Expect = 7.3 Identities = 21/56 (37%), Positives = 25/56 (44%) Frame = +2 Query: 203 PYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA*FDPTRGNLPGPDIARIDRLR 370 PYEK K L G + A + IDG A P E A T N G I +D L+ Sbjct: 401 PYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELK 456
>MPD2_YEAST (Q99316) Protein disulfide isomerase MPD2 precursor (EC 5.3.4.1)| Length = 277 Score = 28.9 bits (63), Expect = 7.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = -2 Query: 350 LCLDLVSFPVLGQIKPQAPRLVVP 279 LC DL FP++ +KP+ LV+P Sbjct: 98 LCTDLPGFPIIELVKPRTKPLVLP 121
>ERF_HUMAN (P50548) ETS domain-containing transcription factor ERF (Ets2| repressor factor) Length = 548 Score = 28.5 bits (62), Expect = 9.6 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 13/85 (15%) Frame = +2 Query: 125 SDTVLVSTINDADQGSADV--AYRTPPAPYEKSKSLGSGGSMVARLKLK-----GIDGRA 283 S+ V V+ I+D D+ +V R PPAP + G S LKL+ D R Sbjct: 435 SEEVEVTDISDEDEEDGEVFKTPRAPPAPPKPEPGEAPGASQCMPLKLRFKRRWSEDCRL 494 Query: 284 PPGVEPAA*FD------PTRGNLPG 340 G PA F+ RG PG Sbjct: 495 EGGGGPAGGFEDEGEDKKVRGEGPG 519
>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein| (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) Length = 650 Score = 28.5 bits (62), Expect = 9.6 Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Frame = -1 Query: 351 AMSGPGKFPRVGSN*AAGSTPGGALPSIPLSFSLATILPP----EPKDFDFS*GAGG 193 A SGPG S AG PG ALP++ L SL + P EP GAGG Sbjct: 51 AASGPGAAGPASSPPPAGPGPGPALPAVRL--SLVRLGDPDGAGEPPSTPSGLGAGG 105
>TEGU_SHV21 (Q01056) Probable large tegument protein| Length = 2469 Score = 28.5 bits (62), Expect = 9.6 Identities = 17/54 (31%), Positives = 23/54 (42%) Frame = -2 Query: 326 PVLGQIKPQAPRLVVPFRQFL*VSALRPYSPRNPKTLISHKVPAESYKQHPPIP 165 P Q P+ PR P + P +PR PKT +P + K+ P IP Sbjct: 253 PTSTQKPPKTPRTPKP------ATPKAPKTPRKPKTPKESTIPYDKSKKPPKIP 300
>BIN1_HUMAN (O00499) Myc box-dependent-interacting protein 1 (Bridging| integrator 1) (Amphiphysin-like protein) (Amphiphysin II) (Box-dependent myc-interacting protein 1) Length = 593 Score = 28.5 bits (62), Expect = 9.6 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -1 Query: 306 AAGSTPGGALPSIPLSFSLATILPPEPK 223 A G+TPG LP P +PP PK Sbjct: 319 AGGATPGATLPKSPSQLRKGPPVPPPPK 346
>SCMH1_HUMAN (Q96GD3) Polycomb protein SCMH1 (Sex comb on midleg homolog 1)| Length = 660 Score = 28.5 bits (62), Expect = 9.6 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Frame = +2 Query: 137 LVSTINDADQGSADVAYRTPPAPYEKSKSLGSGGSMVARLKLKGIDGRAPPGVEPAA*FD 316 L+ T+N A+ + ++ PP+P +G +KL+ +D + P + PA Sbjct: 140 LLKTLNGAEMAPIRIFHKEPPSPSHNFFKMG--------MKLEAVDRKNPHFICPA---- 187 Query: 317 PTRGNLPGPDI-ARIDRLRALS*FYGWWC 400 T G + G ++ D R + +WC Sbjct: 188 -TIGEVRGSEVLVTFDGWRGA---FDYWC 212
>DPOLZ_MOUSE (Q61493) DNA polymerase zeta catalytic subunit (EC 2.7.7.7)| (Seizure-related protein 4) Length = 3122 Score = 28.5 bits (62), Expect = 9.6 Identities = 18/55 (32%), Positives = 26/55 (47%) Frame = -2 Query: 434 QTNRSTN*ERPCTTTHRIKKELSVCQSLLCLDLVSFPVLGQIKPQAPRLVVPFRQ 270 Q +STN + T+TH+ K +SV + + PV KP+ PR P Q Sbjct: 1537 QKAQSTNVVQDSTSTHQPDKNISVSNEHKKANKRTRPVTSPRKPRTPRRTKPKEQ 1591 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,125,365 Number of Sequences: 219361 Number of extensions: 1664524 Number of successful extensions: 4095 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3898 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4091 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
