ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet94a07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_952899.1| Neurospora crassa OR74A hypothetical protein (NCU07364.1) partial mRNA Length = 879 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 ccctttcttcctctcgctc 37 ||||||||||||||||||| Sbjct: 666 ccctttcttcctctcgctc 648
>ref|XM_327649.1| Neurospora crassa OR74A hypothetical protein (NCU07364.1) partial mRNA Length = 879 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 ccctttcttcctctcgctc 37 ||||||||||||||||||| Sbjct: 666 ccctttcttcctctcgctc 648
>gb|AC116585.3| Mus musculus BAC clone RP23-358A16 from chromosome 3, complete sequence Length = 227492 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 20 cctttcttcctctcgctcc 38 ||||||||||||||||||| Sbjct: 179517 cctttcttcctctcgctcc 179535
>gb|AC157919.5| Mus musculus chromosome 3, clone RP23-131B7, complete sequence Length = 190453 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 cctttcttcctctcgctcc 38 ||||||||||||||||||| Sbjct: 144198 cctttcttcctctcgctcc 144180
>gb|U60315.1|MCU60315 Molluscum contagiosum virus subtype 1, complete genome Length = 190289 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 tcctctcgctcctcgctcc 45 ||||||||||||||||||| Sbjct: 109536 tcctctcgctcctcgctcc 109554
>gb|U86918.1|MCU86918 Molluscum contagiosum virus subtype 1 clone B1-44 homolog of vaccinia D1R (B1-44-1) gene, partial cds, homolog of vaccinia D2L (B1-44-2) gene, complete cds, and homolog of vaccinia D3R (B1-44-3) gene, partial cds Length = 1613 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 27 tcctctcgctcctcgctcc 45 ||||||||||||||||||| Sbjct: 760 tcctctcgctcctcgctcc 778
>emb|AL672063.36| Mouse DNA sequence from clone RP23-65A22 on chromosome X, complete sequence Length = 229278 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 21 ctttcttcctctcgctcct 39 ||||||||||||||||||| Sbjct: 98469 ctttcttcctctcgctcct 98487
>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence Length = 194931 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 tttcttcctctcgctcctc 40 ||||||||||||||||||| Sbjct: 118301 tttcttcctctcgctcctc 118319
>emb|AJ272237.1|OPR272237 Ochotona princeps partial cryaa gene for alphaA-crystallin, exons 1-2 Length = 537 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 cctagctctcctcgggccc 21 ||||||||||||||||||| Sbjct: 103 cctagctctcctcgggccc 85
>gb|AC113434.34| Mus musculus strain C57BL/6J clone rp23-456n12 map 5, complete sequence Length = 203821 Score = 38.2 bits (19), Expect = 2.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 tttcttcctctcgctcctc 40 ||||||||||||||||||| Sbjct: 145988 tttcttcctctcgctcctc 146006
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 ctcgggccctttcttcct 30 |||||||||||||||||| Sbjct: 684511 ctcgggccctttcttcct 684494
>gb|AF125314.2| Mus musculus chromosome X clones MP1-C03180, MP1-C22301, CT7-374D15, proximal part, complete sequence Length = 300285 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 69228 tagattcttttctaagat 69245
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 tttcttcctctcgctcct 39 |||||||||||||||||| Sbjct: 109247 tttcttcctctcgctcct 109230
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 tttcttcctctcgctcct 39 |||||||||||||||||| Sbjct: 21416336 tttcttcctctcgctcct 21416319
>gb|AC161586.5| Mus musculus BAC clone RP24-457J18 from chromosome 13, complete sequence Length = 146936 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 27761 tagattcttttctaagat 27778
>ref|XM_572864.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNI02510) partial mRNA Length = 2685 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 13 ctcgggccctttcttcct 30 |||||||||||||||||| Sbjct: 1855 ctcgggccctttcttcct 1838
>gb|AC124382.4| Mus musculus BAC clone RP24-409N22 from chromosome 1, complete sequence Length = 168354 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 139041 tagattcttttctaagat 139024
>gb|AC121583.3| Mus musculus BAC clone RP23-259K16 from 13, complete sequence Length = 207129 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 41363 tagattcttttctaagat 41346
>gb|AC125481.23| Medicago truncatula clone mth2-15n13, complete sequence Length = 121953 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 46 ctagattcttttctaaga 63 |||||||||||||||||| Sbjct: 89716 ctagattcttttctaaga 89699
>emb|AL450319.4| Human DNA sequence from clone RP11-13B22 on chromosome 6 Contains the 5' end of a novel gene and a CpG island, complete sequence Length = 124883 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 43 tccctagattcttttctaagat 64 |||||||||| ||||||||||| Sbjct: 83679 tccctagattattttctaagat 83658
>emb|AL138704.12| Human DNA sequence from clone RP11-417C20 on chromosome 13 Contains the 5' end of gene KIAA1016 and a CpG island, complete sequence Length = 165120 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 42 ctccctagattcttttct 59 |||||||||||||||||| Sbjct: 55226 ctccctagattcttttct 55209
>gb|AC158903.4| Mus musculus chromosome 18, clone RP23-318E22, complete sequence Length = 201073 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 100928 tagattcttttctaagat 100911
>emb|CR936945.2| Medicago truncatula chromosome 5 clone mte1-67e6, COMPLETE SEQUENCE Length = 127675 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 46 ctagattcttttctaaga 63 |||||||||||||||||| Sbjct: 83906 ctagattcttttctaaga 83889
>emb|AL645606.22| Mouse DNA sequence from clone RP23-374K2 on chromosome 1, complete sequence Length = 193458 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 20 cctttcttcctctcgctc 37 |||||||||||||||||| Sbjct: 161741 cctttcttcctctcgctc 161758
>gb|AC105416.3| Homo sapiens BAC clone RP11-310A13 from 4, complete sequence Length = 123331 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 15829 tagattcttttctaagat 15846
>ref|NM_167852.1| Drosophila melanogaster bric a brac 1 CG9097-RB, transcript variant B (bab1), mRNA Length = 4964 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 ggccctttcttcctctcg 34 |||||||||||||||||| Sbjct: 1992 ggccctttcttcctctcg 1975
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 Length = 4429080 Score = 36.2 bits (18), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 19 ccctttcttcctctcgctcctc 40 |||||||||| ||||||||||| Sbjct: 345512 ccctttcttcatctcgctcctc 345491
>ref|XM_393163.2| PREDICTED: Apis mellifera similar to LIM domain protein (LOC409665), mRNA Length = 3672 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 24 tcttcctctcgctcctcg 41 |||||||||||||||||| Sbjct: 962 tcttcctctcgctcctcg 945
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 tttcttcctctcgctcct 39 |||||||||||||||||| Sbjct: 21409365 tttcttcctctcgctcct 21409348
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 tttcttcctctcgctcct 39 |||||||||||||||||| Sbjct: 33219612 tttcttcctctcgctcct 33219595
>gb|AC112666.9| Mus musculus chromosome 3, clone RP24-119D5, complete sequence Length = 193302 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 55445 tagattcttttctaagat 55462
>gb|AC091755.3| Sus scrofa clone RP44-123F10, complete sequence Length = 207865 Score = 36.2 bits (18), Expect = 9.7 Identities = 24/26 (92%) Strand = Plus / Minus Query: 22 tttcttcctctcgctcctcgctccct 47 |||||||| ||| ||||||||||||| Sbjct: 178443 tttcttcccctccctcctcgctccct 178418
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 48 agattcttttctaagatg 65 |||||||||||||||||| Sbjct: 694289 agattcttttctaagatg 694272
>dbj|AP003406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1070A12 Length = 148449 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 tttcttcctctcgctcct 39 |||||||||||||||||| Sbjct: 12859 tttcttcctctcgctcct 12842
>emb|BX649304.3| Mouse DNA sequence from clone RP23-273K8 on chromosome 2, complete sequence Length = 48877 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 48648 tagattcttttctaagat 48631
>gb|AF049707.1|GMAKHSDH1 Glycine max aspartokinase-homoserine dehydrogenase (AK-HSDH) gene, exon 1 and intron 1, partial sequence Length = 190 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 gccctttcttcctctcgc 35 |||||||||||||||||| Sbjct: 128 gccctttcttcctctcgc 145
>gb|AF049706.1|AF049706 Glycine max aspartokinase-homoserine dehydrogenase (AK-HSDH) mRNA, complete cds Length = 3166 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 18 gccctttcttcctctcgc 35 |||||||||||||||||| Sbjct: 132 gccctttcttcctctcgc 149
>gb|AC102385.23| Mus musculus chromosome 1, clone RP24-338N17, complete sequence Length = 119980 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 17571 tagattcttttctaagat 17554
>gb|AC171917.14| Mus musculus chromosome 8, clone RP23-390K13, complete sequence Length = 217234 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 964 tagattcttttctaagat 981
>gb|AC125020.7| Mus musculus chromosome 12, clone RP24-181E5, complete sequence Length = 200586 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 140221 tagattcttttctaagat 140238
>gb|AC102393.8| Mus musculus chromosome 18, clone RP24-125H9, complete sequence Length = 152240 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 110877 tagattcttttctaagat 110894
>emb|BX510363.7| Mouse DNA sequence from clone RP23-379M10 on chromosome 4, complete sequence Length = 29470 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 48 agattcttttctaagatg 65 |||||||||||||||||| Sbjct: 18647 agattcttttctaagatg 18664
>emb|BX000439.11| Mouse DNA sequence from clone RP23-430L20 on chromosome 2, complete sequence Length = 128388 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 1771 tagattcttttctaagat 1754
>emb|CR847828.13| Zebrafish DNA sequence from clone DKEY-36I7 in linkage group 15, complete sequence Length = 107420 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 22 tttcttcctctcgctcct 39 |||||||||||||||||| Sbjct: 36897 tttcttcctctcgctcct 36880
>emb|CR759894.19| Zebrafish DNA sequence from clone DKEYP-84G6 in linkage group 10, complete sequence Length = 188280 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 cctctcgctcctcgctcc 45 |||||||||||||||||| Sbjct: 122843 cctctcgctcctcgctcc 122860
>emb|AL772410.12| Mouse DNA sequence from clone RP23-402K11 on chromosome 4, complete sequence Length = 140507 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 82172 tagattcttttctaagat 82189
>emb|AL683818.12| Mouse DNA sequence from clone RP23-229B23 on chromosome 4, complete sequence Length = 210718 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 20878 tagattcttttctaagat 20861
>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete sequence Length = 190641 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 23 ttcttcctctcgctcctc 40 |||||||||||||||||| Sbjct: 10893 ttcttcctctcgctcctc 10876
>emb|AL732329.7| Mouse DNA sequence from clone RP23-118K22 on chromosome 2, complete sequence Length = 209002 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 110008 tagattcttttctaagat 110025
>emb|AL731843.14| Mouse DNA sequence from clone RP23-300F6 on chromosome X, complete sequence Length = 226657 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 162309 tagattcttttctaagat 162326
>emb|AJ252082.1|DME252082 Drosophila melanogaster mRNA for BAB-I protein (bab-I gene) Length = 4967 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Minus Query: 17 ggccctttcttcctctcg 34 |||||||||||||||||| Sbjct: 1983 ggccctttcttcctctcg 1966
>emb|AL833785.5| Mouse DNA sequence from clone RP23-191H7 on chromosome X, complete sequence Length = 146948 Score = 36.2 bits (18), Expect = 9.7 Identities = 18/18 (100%) Strand = Plus / Plus Query: 47 tagattcttttctaagat 64 |||||||||||||||||| Sbjct: 51346 tagattcttttctaagat 51363 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 642,563 Number of Sequences: 3902068 Number of extensions: 642563 Number of successful extensions: 48560 Number of sequences better than 10.0: 52 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48434 Number of HSP's gapped (non-prelim): 126 length of query: 65 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 44 effective length of database: 17,151,101,840 effective search space: 754648480960 effective search space used: 754648480960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)
