ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet94a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK102788.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
2dbj|AK068585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
3dbj|AK059910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
4ref|NM_191094.1| Oryza sativa (japonica cultivar-group), predic... 42 1.5
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
6dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
7gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosom... 40 5.9
8gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, comple... 40 5.9

>dbj|AK102788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107O14, full
            insert sequence
          Length = 1772

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 164  ggccagatgtccttctacgagaacgtcatttcgaatccaagaat 207
            |||||||||||||||||||| || || || || |||||||||||
Sbjct: 1436 ggccagatgtccttctacgacaatgttatgtcaaatccaagaat 1479



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>dbj|AK068585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151P17, full
           insert sequence
          Length = 1218

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaagaat 207
           |||||||||||||||||||| || || || || |||||||||||
Sbjct: 719 ggccagatgtccttctacgacaatgttatgtcaaatccaagaat 762



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 323  cgttggttatcgtggtcttgtcgac 347
            ||||||||||| |||||||||||||
Sbjct: 978  cgttggttatcatggtcttgtcgac 1002



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>dbj|AK059910.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C10, full
           insert sequence
          Length = 1058

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaagaat 207
           |||||||||||||||||||| || || || || |||||||||||
Sbjct: 809 ggccagatgtccttctacgacaatgttatgtcaaatccaagaat 852



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>ref|NM_191094.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 753

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaag 204
           |||||||||||||||||||| || || || || ||||||||
Sbjct: 682 ggccagatgtccttctacgacaatgttatgtcaaatccaag 722



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 323      cgttggttatcgtggtcttgtcgac 347
                ||||||||||| |||||||||||||
Sbjct: 34858673 cgttggttatcatggtcttgtcgac 34858697



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 164      ggccagatgtccttctacgagaacgtcatttcgaatccaag 204
                |||||||||||||||||||| || || || || ||||||||
Sbjct: 34858331 ggccagatgtccttctacgacaatgttatgtcaaatccaag 34858371



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>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0454H12
          Length = 161004

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 323    cgttggttatcgtggtcttgtcgac 347
              ||||||||||| |||||||||||||
Sbjct: 117845 cgttggttatcatggtcttgtcgac 117869



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 164    ggccagatgtccttctacgagaacgtcatttcgaatccaag 204
              |||||||||||||||||||| || || || || ||||||||
Sbjct: 117503 ggccagatgtccttctacgacaatgttatgtcaaatccaag 117543



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>gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosome 7, complete sequence
          Length = 223522

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 23     cagagcatggccatgagggc 42
              ||||||||||||||||||||
Sbjct: 200172 cagagcatggccatgagggc 200191



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>gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, complete sequence
          Length = 195652

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     cagagcatggccatgagggc 42
              ||||||||||||||||||||
Sbjct: 186739 cagagcatggccatgagggc 186720


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,845,554
Number of Sequences: 3902068
Number of extensions: 2845554
Number of successful extensions: 50984
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50947
Number of HSP's gapped (non-prelim): 37
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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