| Clone Name | baet94a04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107O14, full insert sequence Length = 1772 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Plus Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaagaat 207 |||||||||||||||||||| || || || || ||||||||||| Sbjct: 1436 ggccagatgtccttctacgacaatgttatgtcaaatccaagaat 1479
>dbj|AK068585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151P17, full insert sequence Length = 1218 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Plus Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaagaat 207 |||||||||||||||||||| || || || || ||||||||||| Sbjct: 719 ggccagatgtccttctacgacaatgttatgtcaaatccaagaat 762 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 cgttggttatcgtggtcttgtcgac 347 ||||||||||| ||||||||||||| Sbjct: 978 cgttggttatcatggtcttgtcgac 1002
>dbj|AK059910.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-C10, full insert sequence Length = 1058 Score = 48.1 bits (24), Expect = 0.024 Identities = 39/44 (88%) Strand = Plus / Plus Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaagaat 207 |||||||||||||||||||| || || || || ||||||||||| Sbjct: 809 ggccagatgtccttctacgacaatgttatgtcaaatccaagaat 852
>ref|NM_191094.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 753 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaag 204 |||||||||||||||||||| || || || || |||||||| Sbjct: 682 ggccagatgtccttctacgacaatgttatgtcaaatccaag 722
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 cgttggttatcgtggtcttgtcgac 347 ||||||||||| ||||||||||||| Sbjct: 34858673 cgttggttatcatggtcttgtcgac 34858697 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaag 204 |||||||||||||||||||| || || || || |||||||| Sbjct: 34858331 ggccagatgtccttctacgacaatgttatgtcaaatccaag 34858371
>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0454H12 Length = 161004 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 323 cgttggttatcgtggtcttgtcgac 347 ||||||||||| ||||||||||||| Sbjct: 117845 cgttggttatcatggtcttgtcgac 117869 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 164 ggccagatgtccttctacgagaacgtcatttcgaatccaag 204 |||||||||||||||||||| || || || || |||||||| Sbjct: 117503 ggccagatgtccttctacgacaatgttatgtcaaatccaag 117543
>gb|AC148981.7| Mus musculus BAC clone RP23-201L15 from chromosome 7, complete sequence Length = 223522 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 cagagcatggccatgagggc 42 |||||||||||||||||||| Sbjct: 200172 cagagcatggccatgagggc 200191
>gb|AC150681.2| Mus musculus BAC clone RP24-490A22 from 7, complete sequence Length = 195652 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 cagagcatggccatgagggc 42 |||||||||||||||||||| Sbjct: 186739 cagagcatggccatgagggc 186720 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,845,554 Number of Sequences: 3902068 Number of extensions: 2845554 Number of successful extensions: 50984 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50947 Number of HSP's gapped (non-prelim): 37 length of query: 440 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 418 effective length of database: 17,147,199,772 effective search space: 7167529504696 effective search space used: 7167529504696 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)