ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet93h06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_194471.1| Oryza sativa (japonica cultivar-group) putative... 64 3e-07
2dbj|AK104934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
3dbj|AK065110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
4gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, co... 44 0.29
5gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, co... 44 0.29
6gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
7gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
8gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.1
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
10ref|NM_001009847.1| Felis catus chemokine (C-X-C motif) ligand 1... 42 1.1
11dbj|AB011966.1| Felis catus mRNA for stromal cell-derived factor... 42 1.1
12dbj|AB011965.1| Felis catus mRNA for stromal cell-derived factor... 42 1.1
13ref|XM_466212.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
14ref|XM_466213.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.5
15ref|XM_506826.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.5
16ref|NM_195919.1| Oryza sativa (japonica cultivar-group) hypothet... 40 4.5
17gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 4.5
18ref|XM_516697.1| PREDICTED: Pan troglodytes similar to KIAA1445 ... 40 4.5
19ref|XM_513054.1| PREDICTED: Pan troglodytes similar to PLEKHM2 p... 40 4.5
20ref|XM_471509.1| Oryza sativa (japonica cultivar-group), predic... 40 4.5
21gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 4.5
22gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
23gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 4.5
24gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene clu... 40 4.5
25gb|AY658786.1| Synthetic construct Peudomonas aeruginosa clone F... 40 4.5
26ref|NM_001031702.2| Homo sapiens sema domain, seven thrombospond... 40 4.5
27ref|NM_013661.1| Mus musculus sema domain, seven thrombospondin ... 40 4.5
28gb|BC040441.1| Homo sapiens pleckstrin homology domain containin... 40 4.5
29gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence 40 4.5
30emb|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A... 40 4.5
31gb|AY358124.1| Homo sapiens clone DNA194909 SEMA5B (UNQ5867) mRN... 40 4.5
32gb|AF067222.1| Caenorhabditis elegans fosmid H11E01, complete se... 40 4.5
33gb|BC077726.1| Homo sapiens sema domain, seven thrombospondin re... 40 4.5
34gb|AF067209.2| Caenorhabditis elegans cosmid B0344, complete seq... 40 4.5
35gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 4.5
36gb|AC078794.13| Homo sapiens 3 BAC RP11-67L2 (Roswell Park Cance... 40 4.5
37gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
38emb|X97818.1|HSSEMG M.musculus mRNA for semaphorin G 40 4.5
39gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
40gb|BC052397.1| Mus musculus sema domain, seven thrombospondin re... 40 4.5
41emb|AJ457979.1|TAE457979 Triticum aestivum partial mRNA for ferr... 40 4.5
42gb|AC166065.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
43gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
44dbj|AK091481.1| Homo sapiens cDNA FLJ34162 fis, clone FCBBF30142... 40 4.5
45gb|AC108883.1| Genomic sequence for (japonica cultivar-group) cu... 40 4.5
46ref|XM_938581.1| PREDICTED: Homo sapiens pleckstrin homology dom... 40 4.5
47ref|XM_290944.4| PREDICTED: Homo sapiens pleckstrin homology dom... 40 4.5
48gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.5
49ref|NM_075898.3| Caenorhabditis elegans H11E01.3 (H11E01.3) mRNA... 40 4.5
50dbj|AK078659.1| Mus musculus adult male adrenal gland cDNA, RIKE... 40 4.5
51dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
52dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
53dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
54dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
55gb|AE004851.1| Pseudomonas aeruginosa PAO1, section 412 of 529 o... 40 4.5
56gb|AE004621.1| Pseudomonas aeruginosa PAO1, section 182 of 529 o... 40 4.5
57dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
58dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
59dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
60dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.5
61dbj|AK129362.1| Mus musculus mRNA for mKIAA1445 protein 40 4.5
62dbj|AK106921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
63dbj|AK100189.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
64dbj|AK100187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
65dbj|AK068604.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
66emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 4.5
67dbj|AK060580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.5
68gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.5
69gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.5
70emb|AL121992.24|HSDJ680D5 Human DNA sequence from clone RP4-680D... 40 4.5
71emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4,... 40 4.5
72gb|AC154653.2| Mus musculus BAC clone RP24-262N5 from chromosome... 40 4.5
73dbj|AB040878.1| Homo sapiens mRNA for KIAA1445 protein, partial cds 40 4.5 
>ref|NM_194471.1| Oryza sativa (japonica cultivar-group) putative dehydrogenase
           (OJ1136E01.14), mRNA
          Length = 1068

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 75/88 (85%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                       
Query: 234 gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccggacag-aagggagctc 292
           |||||||||||| |||| || |||||||| ||||| || |||||  | | ||||||| ||
Sbjct: 217 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccgagctgtaagggagttc 276

                                       
Query: 293 atcaagctgggcttccgcgtccgcgccg 320
           |||||||| |||||||| ||||||||||
Sbjct: 277 atcaagcttggcttccgtgtccgcgccg 304
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>dbj|AK104934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-D05, full
           insert sequence
          Length = 1681

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 75/88 (85%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                       
Query: 234 gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccggacag-aagggagctc 292
           |||||||||||| |||| || |||||||| ||||| || |||||  | | ||||||| ||
Sbjct: 221 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccgagctgtaagggagttc 280

                                       
Query: 293 atcaagctgggcttccgcgtccgcgccg 320
           |||||||| |||||||| ||||||||||
Sbjct: 281 atcaagcttggcttccgtgtccgcgccg 308
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>dbj|AK065110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O01, full
           insert sequence
          Length = 1702

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 75/88 (85%), Gaps = 1/88 (1%)
 Strand = Plus / Plus

                                                                       
Query: 234 gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccggacag-aagggagctc 292
           |||||||||||| |||| || |||||||| ||||| || |||||  | | ||||||| ||
Sbjct: 239 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccgagctgtaagggagttc 298

                                       
Query: 293 atcaagctgggcttccgcgtccgcgccg 320
           |||||||| |||||||| ||||||||||
Sbjct: 299 atcaagcttggcttccgtgtccgcgccg 326
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>gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, complete sequence
          Length = 261979

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 157    cctcctcctctgctcgctcctt 178
              ||||||||||||||||||||||
Sbjct: 185799 cctcctcctctgctcgctcctt 185778
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>gb|AC137148.14| Mus musculus chromosome 19, clone RP24-210C4, complete sequence
          Length = 168235

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 157  cctcctcctctgctcgctcctt 178
            ||||||||||||||||||||||
Sbjct: 4038 cctcctcctctgctcgctcctt 4017
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>gb|AC118284.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1087_C03,
             complete sequence
          Length = 101218

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   cgtcttcgtcgccggcgccac 259
             |||||||||||||||||||||
Sbjct: 42325 cgtcttcgtcgccggcgccac 42305
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>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0075A10, complete sequence
          Length = 171101

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 239  cgtcttcgtcgccggcgccac 259
            |||||||||||||||||||||
Sbjct: 4973 cgtcttcgtcgccggcgccac 4953
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 220     cggtgaaggagcaggacctcg 240
               |||||||||||||||||||||
Sbjct: 2020785 cggtgaaggagcaggacctcg 2020765
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 239      cgtcttcgtcgccggcgccac 259
                |||||||||||||||||||||
Sbjct: 25771031 cgtcttcgtcgccggcgccac 25771011
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>ref|NM_001009847.1| Felis catus chemokine (C-X-C motif) ligand 12 (CXCL12), mRNA
          Length = 336

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  catggatgccaaggccgtcgccgtg 26
          |||||||||||||| ||||||||||
Sbjct: 40 catggatgccaaggtcgtcgccgtg 64
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>dbj|AB011966.1| Felis catus mRNA for stromal cell-derived factor-1 b, complete
          cds
          Length = 336

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  catggatgccaaggccgtcgccgtg 26
          |||||||||||||| ||||||||||
Sbjct: 40 catggatgccaaggtcgtcgccgtg 64
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>dbj|AB011965.1| Felis catus mRNA for stromal cell-derived factor-1 a, complete
          cds
          Length = 310

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 2  catggatgccaaggccgtcgccgtg 26
          |||||||||||||| ||||||||||
Sbjct: 40 catggatgccaaggtcgtcgccgtg 64
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>ref|XM_466212.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 819

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 cctcgtcttcgtcgccggcg 255
           ||||||||||||||||||||
Sbjct: 307 cctcgtcttcgtcgccggcg 288
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>ref|XM_466213.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1052

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 cctcgtcttcgtcgccggcg 255
           ||||||||||||||||||||
Sbjct: 614 cctcgtcttcgtcgccggcg 633
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>ref|XM_506826.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1008_F08.20
           mRNA
          Length = 1060

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 cctcgtcttcgtcgccggcg 255
           ||||||||||||||||||||
Sbjct: 619 cctcgtcttcgtcgccggcg 638
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>ref|NM_195919.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNAb0078C13.3), mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 cctcgtcttcgtcgccggcg 255
           ||||||||||||||||||||
Sbjct: 429 cctcgtcttcgtcgccggcg 448
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 200    tatggcggcggccgctgcgc 219
              ||||||||||||||||||||
Sbjct: 596017 tatggcggcggccgctgcgc 595998
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>ref|XM_516697.1| PREDICTED: Pan troglodytes similar to KIAA1445 protein (LOC460636),
            mRNA
          Length = 4371

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 3422 agctgggcttccgcgtccgc 3441
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>ref|XM_513054.1| PREDICTED: Pan troglodytes similar to PLEKHM2 protein (LOC456462),
           mRNA
          Length = 3609

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 ctccttccccgccggccgcg 192
           ||||||||||||||||||||
Sbjct: 46  ctccttccccgccggccgcg 65
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>ref|XM_471509.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1464

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 cttcgtcgccggcgccaccg 261
           ||||||||||||||||||||
Sbjct: 324 cttcgtcgccggcgccaccg 343
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     cgtgctctgcatccgcgcgg 101
              ||||||||||||||||||||
Sbjct: 376628 cgtgctctgcatccgcgcgg 376609
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>gb|AC079632.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0046L02, complete sequence
          Length = 142381

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 234   gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccg 277
             |||||||||||| |||| || |||||||| ||||| || |||||
Sbjct: 22968 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccg 22925
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 91      catccgcgcggaggtcgcgc 110
               ||||||||||||||||||||
Sbjct: 1119572 catccgcgcggaggtcgcgc 1119553
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>gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene cluser, complete
             sequence; and bacteriophytochrome (bphP), PpsR protein
             (ppsR), cytochrome C2 (cycA), geranylgeranyl
             bacteriochlorophyll reductase (bchP), light harvesting
             pigment major facilitator family (bch2),
             geranylgeranyl-bacteriochlorophyll synthetase (bchG),
             PpsR1 (ppsR1), and transcriptional regulator, AerR (aerR)
             genes, complete cds; and 2-vinyl bacteriochlorophillide
             hydratase BchF subunit (bchF) gene, partial cds
          Length = 30040

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 96    gcgcggaggtcgcgcaggtgcggg 119
             |||| |||||||||||||||||||
Sbjct: 19307 gcgccgaggtcgcgcaggtgcggg 19330
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>gb|AY658786.1| Synthetic construct Peudomonas aeruginosa clone FLH047408.01F
           PA1950 gene, partial cds
          Length = 927

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  cgtcgccggcggcaacggcc 75
           ||||||||||||||||||||
Sbjct: 330 cgtcgccggcggcaacggcc 349
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>ref|NM_001031702.2| Homo sapiens sema domain, seven thrombospondin repeats (type 1 and
            type 1-like), transmembrane domain (TM) and short
            cytoplasmic domain, (semaphorin) 5B (SEMA5B), transcript
            variant 1, mRNA
          Length = 4737

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 2913 agctgggcttccgcgtccgc 2932
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>ref|NM_013661.1| Mus musculus sema domain, seven thrombospondin repeats (type 1 and
            type 1-like), transmembrane domain (TM) and short
            cytoplasmic domain, (semaphorin) 5B (Sema5b), mRNA
          Length = 3792

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 2517 agctgggcttccgcgtccgc 2536
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>gb|BC040441.1| Homo sapiens pleckstrin homology domain containing, family M (with
           RUN domain) member 2, mRNA (cDNA clone IMAGE:5590182),
           partial cds
          Length = 4172

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 ctccttccccgccggccgcg 192
           ||||||||||||||||||||
Sbjct: 3   ctccttccccgccggccgcg 22
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>gb|AY502076.1| Rhodococcus sp. DK17 plasmid pDK3, partial sequence
          Length = 104578

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    cgcgcggaggtcgcgcaggt 114
             ||||||||||||||||||||
Sbjct: 96267 cgcgcggaggtcgcgcaggt 96286
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>emb|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A2 on chromosome 1q42.11-42.3
             Contains the 5' end of the NUP133 gene, a novel gene, the
             ABCB10 gene for ATP-binding cassette, sub-family B
             (MDR/TAP), member 10, a high-mobility group nucleosomal
             binding domain 2 (HMGN2) pseudogene, the TAF5L gene for
             TAF5-like RNA polymerase II, p300/CBP-associated factor
             (PCAF)-associated factor, 65kDa, the 5' end of a novel
             gene (KIAA0133) and three CpG islands, complete sequence
          Length = 147913

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    gccgtgtccctctcggcgcc 40
             ||||||||||||||||||||
Sbjct: 72068 gccgtgtccctctcggcgcc 72087
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>gb|AY358124.1| Homo sapiens clone DNA194909 SEMA5B (UNQ5867) mRNA, complete cds
          Length = 4725

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 2803 agctgggcttccgcgtccgc 2822
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>gb|AF067222.1| Caenorhabditis elegans fosmid H11E01, complete sequence
          Length = 19404

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 204  gcggcggccgctgcgccggtgaag 227
            |||||||||||||| |||||||||
Sbjct: 3856 gcggcggccgctgcaccggtgaag 3833
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>gb|BC077726.1| Homo sapiens sema domain, seven thrombospondin repeats (type 1 and
            type 1-like), transmembrane domain (TM) and short
            cytoplasmic domain, (semaphorin) 5B, transcript variant
            1, mRNA (cDNA clone MGC:78583 IMAGE:6597493), complete
            cds
          Length = 4494

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 2679 agctgggcttccgcgtccgc 2698
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>gb|AF067209.2| Caenorhabditis elegans cosmid B0344, complete sequence
          Length = 41869

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 204   gcggcggccgctgcgccggtgaag 227
             |||||||||||||| |||||||||
Sbjct: 37425 gcggcggccgctgcaccggtgaag 37402
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 201    atggcggcggccgctgcgcc 220
              ||||||||||||||||||||
Sbjct: 955964 atggcggcggccgctgcgcc 955945
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>gb|AC078794.13| Homo sapiens 3 BAC RP11-67L2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154667

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   agctgggcttccgcgtccgc 316
             ||||||||||||||||||||
Sbjct: 38782 agctgggcttccgcgtccgc 38801
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 234   gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccg 277
             |||||||||||| |||| || |||||||| ||||| || |||||
Sbjct: 37074 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccg 37031
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>emb|X97818.1|HSSEMG M.musculus mRNA for semaphorin G
          Length = 3792

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 2517 agctgggcttccgcgtccgc 2536
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>gb|AC091666.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0078C13, complete sequence
          Length = 140553

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   cctcgtcttcgtcgccggcg 255
             ||||||||||||||||||||
Sbjct: 16543 cctcgtcttcgtcgccggcg 16562
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>gb|BC052397.1| Mus musculus sema domain, seven thrombospondin repeats (type 1 and
            type 1-like), transmembrane domain (TM) and short
            cytoplasmic domain, (semaphorin) 5B, mRNA (cDNA clone
            MGC:63446 IMAGE:5719939), complete cds
          Length = 4658

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 2813 agctgggcttccgcgtccgc 2832
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>emb|AJ457979.1|TAE457979 Triticum aestivum partial mRNA for ferredoxin-NADP(H)
           oxidoreductase (fnr gene), clone 1
          Length = 1062

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 207 gcggccgctgcgccggtgaaggag 230
           |||||||| |||||||||||||||
Sbjct: 921 gcggccgcggcgccggtgaaggag 898
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>gb|AC166065.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1136E01,
             complete sequence
          Length = 105139

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 234   gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccg 277
             |||||||||||| |||| || |||||||| ||||| || |||||
Sbjct: 42213 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccg 42170
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>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAb0078C13, complete sequence
          Length = 146538

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   cctcgtcttcgtcgccggcg 255
             ||||||||||||||||||||
Sbjct: 34171 cctcgtcttcgtcgccggcg 34152
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>dbj|AK091481.1| Homo sapiens cDNA FLJ34162 fis, clone FCBBF3014260, highly similar to
            SEMAPHORIN 5B PRECURSOR
          Length = 3791

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 3136 agctgggcttccgcgtccgc 3155
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>gb|AC108883.1| Genomic sequence for (japonica cultivar-group) cultivar Nipponbare
             clone OJ1136E01, from chromosome 10, complete sequence
          Length = 113856

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                         
Query: 234   gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccg 277
             |||||||||||| |||| || |||||||| ||||| || |||||
Sbjct: 76783 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccg 76826
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>ref|XM_938581.1| PREDICTED: Homo sapiens pleckstrin homology domain containing,
           family M (with RUN domain) member 2 (PLEKHM2), mRNA
          Length = 4153

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 ctccttccccgccggccgcg 192
           ||||||||||||||||||||
Sbjct: 40  ctccttccccgccggccgcg 59
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>ref|XM_290944.4| PREDICTED: Homo sapiens pleckstrin homology domain containing,
           family M (with RUN domain) member 2 (PLEKHM2), mRNA
          Length = 4153

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 173 ctccttccccgccggccgcg 192
           ||||||||||||||||||||
Sbjct: 40  ctccttccccgccggccgcg 59
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     ggcggcggccgctgcgccgg 222
               ||||||||||||||||||||
Sbjct: 3228602 ggcggcggccgctgcgccgg 3228621
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>ref|NM_075898.3| Caenorhabditis elegans H11E01.3 (H11E01.3) mRNA, complete cds
          Length = 4440

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 204 gcggcggccgctgcgccggtgaag 227
           |||||||||||||| |||||||||
Sbjct: 929 gcggcggccgctgcaccggtgaag 906
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>dbj|AK078659.1| Mus musculus adult male adrenal gland cDNA, RIKEN full-length
           enriched library, clone:7330442G16 product:sema domain,
           seven thrombospondin repeats (type 1 and type 1-like),
           transmembrane domain (TM) and short cytoplasmic domain,
           (semaphorin) 5B, full insert sequence
          Length = 1565

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 297 agctgggcttccgcgtccgc 316
           ||||||||||||||||||||
Sbjct: 658 agctgggcttccgcgtccgc 677
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 242      cttcgtcgccggcgccaccg 261
                ||||||||||||||||||||
Sbjct: 11506967 cttcgtcgccggcgccaccg 11506986
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      cctcgtcttcgtcgccggcg 255
                ||||||||||||||||||||
Sbjct: 10017412 cctcgtcttcgtcgccggcg 10017393



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 234   gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccg 277
             |||||||||||| |||| || |||||||| ||||| || |||||
Sbjct: 37074 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccg 37031
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 238      tcgtcttcgtcgccggcgcc 257
                ||||||||||||||||||||
Sbjct: 24703436 tcgtcttcgtcgccggcgcc 24703417
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 201      atggcggcggccgctgcgccggtgaaggagcaggac 236
                ||||||||||| || ||| ||||||||||| |||||
Sbjct: 27759231 atggcggcggcggcggcggcggtgaaggaggaggac 27759196



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      cctcgtcttcgtcgccggcg 255
                ||||||||||||||||||||
Sbjct: 21079917 cctcgtcttcgtcgccggcg 21079898



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 238     tcgtcttcgtcgccggcgcc 257
               ||||||||||||||||||||
Sbjct: 8075575 tcgtcttcgtcgccggcgcc 8075594
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>gb|AE004851.1| Pseudomonas aeruginosa PAO1, section 412 of 529 of the complete
            genome
          Length = 13101

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 41   gctgccccggtgccgcgtcgccggcggc 68
            |||||||||||||| |||||| ||||||
Sbjct: 3673 gctgccccggtgcctcgtcgcgggcggc 3700
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>gb|AE004621.1| Pseudomonas aeruginosa PAO1, section 182 of 529 of the complete
            genome
          Length = 10565

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   cgtcgccggcggcaacggcc 75
            ||||||||||||||||||||
Sbjct: 9872 cgtcgccggcggcaacggcc 9891
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0503B05
          Length = 156814

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   tcgtcttcgtcgccggcgcc 257
             ||||||||||||||||||||
Sbjct: 63768 tcgtcttcgtcgccggcgcc 63787
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>dbj|AP005175.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0040H10
          Length = 132919

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   tcgtcttcgtcgccggcgcc 257
             ||||||||||||||||||||
Sbjct: 59373 tcgtcttcgtcgccggcgcc 59354
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>dbj|AP005823.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0663F07
          Length = 159046

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 201   atggcggcggccgctgcgccggtgaaggagcaggac 236
             ||||||||||| || ||| ||||||||||| |||||
Sbjct: 44564 atggcggcggcggcggcggcggtgaaggaggaggac 44529
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>dbj|AP004017.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1008_F08
          Length = 105979

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   cctcgtcttcgtcgccggcg 255
             ||||||||||||||||||||
Sbjct: 81662 cctcgtcttcgtcgccggcg 81643
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>dbj|AK129362.1| Mus musculus mRNA for mKIAA1445 protein
          Length = 2878

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 1053 agctgggcttccgcgtccgc 1072
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>dbj|AK106921.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B05, full
           insert sequence
          Length = 2530

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 cctcgtcttcgtcgccggcg 255
           ||||||||||||||||||||
Sbjct: 478 cctcgtcttcgtcgccggcg 497
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>dbj|AK100189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034P03, full
           insert sequence
          Length = 1621

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 242 cttcgtcgccggcgccaccg 261
           ||||||||||||||||||||
Sbjct: 338 cttcgtcgccggcgccaccg 357
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>dbj|AK100187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023033O22, full
           insert sequence
          Length = 1060

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 cctcgtcttcgtcgccggcg 255
           ||||||||||||||||||||
Sbjct: 619 cctcgtcttcgtcgccggcg 638
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>dbj|AK068604.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157G05, full
            insert sequence
          Length = 4296

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  cttcgtcgccggcgccaccg 261
            ||||||||||||||||||||
Sbjct: 3018 cttcgtcgccggcgccaccg 3037
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 55      gcgtcgccggcggcaacggc 74
               ||||||||||||||||||||
Sbjct: 1527451 gcgtcgccggcggcaacggc 1527470
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>dbj|AK060580.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G04, full
           insert sequence
          Length = 1052

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 236 cctcgtcttcgtcgccggcg 255
           ||||||||||||||||||||
Sbjct: 614 cctcgtcttcgtcgccggcg 633
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 203     ggcggcggccgctgcgccgg 222
               ||||||||||||||||||||
Sbjct: 3996118 ggcggcggccgctgcgccgg 3996099
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 236      cctcgtcttcgtcgccggcg 255
                ||||||||||||||||||||
Sbjct: 10023451 cctcgtcttcgtcgccggcg 10023432



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 234   gacctcgtcttcgtcgccggcgccaccgggaaggtcggctcccg 277
             |||||||||||| |||| || |||||||| ||||| || |||||
Sbjct: 37072 gacctcgtcttcatcgcgggagccaccggaaaggtgggatcccg 37029
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>emb|AL121992.24|HSDJ680D5 Human DNA sequence from clone RP4-680D5 on chromosome 1p36.13-36.31
              Contains the 3' end of the gene for a novel DnaJ
              domain-containing protein (KIAA0962, FLJ13743, FLJ12468),
              the AGMAT gene for agmatine ureohydrolase (agmatinase), a
              novel gene (FLJ34180), a novel pseudogene similar to Mus
              musculus ethanol induced 6 (Etohi6), a CD24 antigen (small
              cell lung carcinoma cluster 4 antigen) (CD24) pseudogene,
              the gene for DNA-damage inducible protein 2 (DDI2), the
              RSC1A1 gene for regulatory solute carrier protein family 1
              member 1 and the 5' end of the gene for a novel RUN and PH
              domain-containing protein (KIAA0842), complete sequence
          Length = 170399

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    ctccttccccgccggccgcg 192
              ||||||||||||||||||||
Sbjct: 148510 ctccttccccgccggccgcg 148529
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>emb|AL606602.2|OSJN00067 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0056F09,
              complete sequence
          Length = 148191

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    cttcgtcgccggcgccaccg 261
              ||||||||||||||||||||
Sbjct: 132580 cttcgtcgccggcgccaccg 132599
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>gb|AC154653.2| Mus musculus BAC clone RP24-262N5 from chromosome 16, complete sequence
          Length = 164851

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   agctgggcttccgcgtccgc 316
             ||||||||||||||||||||
Sbjct: 63702 agctgggcttccgcgtccgc 63721
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>dbj|AB040878.1| Homo sapiens mRNA for KIAA1445 protein, partial cds
          Length = 4559

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgggcttccgcgtccgc 316
            ||||||||||||||||||||
Sbjct: 2762 agctgggcttccgcgtccgc 2781


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,454,363
Number of Sequences: 3902068
Number of extensions: 2454363
Number of successful extensions: 61580
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59859
Number of HSP's gapped (non-prelim): 1721
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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