Clone Information

BLAST Search Result

Clone Name	baet93f06
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS5_LACLA (Q9CDY0) 30S ribosomal protein S5	35	0.12
2	RR5_ODOSI (P49493) Chloroplast 30S ribosomal protein S5	35	0.12
3	RR5_CYAPA (P23402) Cyanelle 30S ribosomal protein S5	35	0.12
4	RS5_SYNPX (Q7U4I4) 30S ribosomal protein S5	34	0.21
5	RR5_GUITH (O46910) Chloroplast 30S ribosomal protein S5	34	0.21
6	RS5_PROMA (Q7V9X8) 30S ribosomal protein S5	33	0.28
7	RS5_PROMM (Q7V529) 30S ribosomal protein S5	33	0.36
8	RS5_TREPA (O83236) 30S ribosomal protein S5	33	0.47
9	RS5_PROMT (Q46IS5) 30S ribosomal protein S5	32	0.62
10	RS5_BUCAP (Q8K966) 30S ribosomal protein S5	32	0.81
11	TRPA_DESVH (Q72EU7) Tryptophan synthase alpha chain (EC 4.2.1.20)	31	1.4
12	SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non...	31	1.8
13	RS5_MYCPU (Q98PZ9) 30S ribosomal protein S5	31	1.8
14	RS5_MYCMO (Q6KI38) 30S ribosomal protein S5	30	2.3
15	FILA_HUMAN (P20930) Filaggrin	30	2.3
16	DAN4_YEAST (P47179) Cell wall protein DAN4 precursor	30	2.3
17	CEF1_YEAST (Q03654) Pre-mRNA-splicing factor CEF1 (PRP19-associa...	30	3.1
18	RS5_THEMA (Q9X1J2) 30S ribosomal protein S5	30	3.1
19	RS5_PROM9 (Q318K0) 30S ribosomal protein S5	30	3.1
20	RR5_PORPU (P51298) Chloroplast 30S ribosomal protein S5	30	3.1
21	SOK2_YEAST (P53438) Protein SOK2	30	3.1
22	RS5_LACPL (Q88XW9) 30S ribosomal protein S5	30	4.0
23	P53_BOVIN (P67939) Cellular tumor antigen p53 (Tumor suppressor ...	30	4.0
24	P53_BOSIN (P67938) Cellular tumor antigen p53 (Tumor suppressor ...	30	4.0
25	POLS_SFV (P03315) Structural polyprotein (p130) [Contains: Capsi...	24	4.9
26	ASB16_MOUSE (Q8VHS5) Ankyrin repeat and SOCS box protein 16 (ASB...	29	5.2
27	RS5_MESFL (Q6F1X7) 30S ribosomal protein S5	29	5.2
28	RS5_NITWN (Q3SSU9) 30S ribosomal protein S5	29	5.2
29	RS5_FRATT (Q5NHV1) 30S ribosomal protein S5	29	5.2
30	RS5_DEIRA (Q9RSL1) 30S ribosomal protein S5	29	5.2
31	PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA ...	29	5.2
32	RS5_NITOC (Q3J8T1) 30S ribosomal protein S5	29	5.2
33	RS5_COXBU (Q83EQ9) 30S ribosomal protein S5	29	6.8
34	K1576_HUMAN (Q9HCJ6) Probable oxidoreductase KIAA1576 (EC 1.-.-.-)	29	6.8
35	RS5_BUCAI (P57574) 30S ribosomal protein S5	29	6.8
36	TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Ta...	29	6.8
37	ENPL_CATRO (P35016) Endoplasmin homolog precursor (GRP94 homolog)	29	6.8
38	OAM_ASCSU (Q01456) Ovarian abundant message protein (Protein OAM)	28	8.9
39	RS5_MYCMS (Q6MSP2) 30S ribosomal protein S5	28	8.9
40	BASP_BOVIN (P80724) Brain acid soluble protein 1 (BASP1 protein)...	28	8.9
41	RS5_MYCHJ (Q4AAF7) 30S ribosomal protein S5	28	8.9
42	RS5_MYCH7 (Q4A8I8) 30S ribosomal protein S5	28	8.9
43	RS5_MYCH2 (Q601J7) 30S ribosomal protein S5	28	8.9

>RS5_LACLA (Q9CDY0) 30S ribosomal protein S5|
          Length = 168

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 21/74 (28%), Positives = 28/74 (37%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           R+ R   EF E             GGR+L + AL                     EAI K
Sbjct: 6   RNDREQSEFEERVVSINRVTKVVKGGRRLRFAALVVVGDRNGRVGFGTGKAQEVPEAIRK 65

Query: 411 AAVNGRRNLVTVPL 452
           A    ++NL+TVP+
Sbjct: 66  AIEAAKKNLITVPM 79

to top

>RR5_ODOSI (P49493) Chloroplast 30S ribosomal protein S5|
          Length = 185

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 19/75 (25%), Positives = 29/75 (38%)
 Frame = +3

Query: 234 DQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKA 413
           D     +F E             GG++LS+RA+                      A  KA
Sbjct: 19  DNLSESKFVERLIKISRVSKVTKGGKKLSFRAIVVVGNENGQVGVGVGKADDVVNAFKKA 78

Query: 414 AVNGRRNLVTVPLTK 458
             +GR+NL+ +P+TK
Sbjct: 79  KADGRKNLIKIPITK 93

to top

>RR5_CYAPA (P23402) Cyanelle 30S ribosomal protein S5|
          Length = 169

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           RD++P  ++ E             GG++LS+RA+                      A+ K
Sbjct: 11  RDKKP--DWQERVVQIRRVSKVVKGGKKLSFRAIVVIGNERGQVGVGIGKASDVINAVKK 68

Query: 411 AAVNGRRNLVTVPLTK 458
           AA +G++++V VPLT+
Sbjct: 69  AAADGKKHVVEVPLTR 84

to top

>RS5_SYNPX (Q7U4I4) 30S ribosomal protein S5|
          Length = 215

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 18/77 (23%), Positives = 33/77 (42%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           R+Q  + E+ E             GG+++S+RA+                      A+ K
Sbjct: 51  RNQERDSEWQERVVQIRRVSKTVKGGKKMSFRAIVVVGNEKGQVGVGVGKAGDVIGAVRK 110

Query: 411 AAVNGRRNLVTVPLTKY 461
              +G+++LV VPLT++
Sbjct: 111 GVADGKKHLVKVPLTRH 127

to top

>RR5_GUITH (O46910) Chloroplast 30S ribosomal protein S5|
          Length = 169

 Score = 33.9 bits (76), Expect = 0.21
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 303 GGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAAVNGRRNLVTVPLT 455
           GG++LS+RA+                      A+ KA  +GR+NL+ +PLT
Sbjct: 33  GGKKLSFRAIIILGNERGQVGVGVGKASDVIGAVKKAVTDGRKNLINIPLT 83

to top

>RS5_PROMA (Q7V9X8) 30S ribosomal protein S5|
          Length = 211

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 19/75 (25%), Positives = 31/75 (41%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           R+Q  + E+ E             GG+++S+RA+                      A+ K
Sbjct: 47  RNQDRDSEWQERVIQIRRVSKTVKGGKKMSFRAIVVVGNEKGQVGVGVGKAGDVIGAVRK 106

Query: 411 AAVNGRRNLVTVPLT 455
              +G++NLV VPLT
Sbjct: 107 GVADGKKNLVRVPLT 121

to top

>RS5_PROMM (Q7V529) 30S ribosomal protein S5|
          Length = 209

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 18/77 (23%), Positives = 32/77 (41%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           R Q  + E+ E             GG+++S+RA+                      A+ K
Sbjct: 45  RGQERDSEWQERVVQIRRVSKTVKGGKKMSFRAIVVVGNERGQVGVGVGKAGDVIGAVRK 104

Query: 411 AAVNGRRNLVTVPLTKY 461
              +G+++LV VPLT++
Sbjct: 105 GVADGKKHLVKVPLTRH 121

to top

>RS5_TREPA (O83236) 30S ribosomal protein S5|
          Length = 172

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 20/77 (25%), Positives = 30/77 (38%)
 Frame = +3

Query: 222 DMDRDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEA 401
           D  +D+  + EF+E             GGR+ S+ AL                    SEA
Sbjct: 6   DFGKDRLRDKEFTEKLIKLNRTAKVVKGGRRFSFSALTVVGDQKGRVGFGFGKAGDVSEA 65

Query: 402 ITKAAVNGRRNLVTVPL 452
           I K+    +R++V  PL
Sbjct: 66  IRKSVERAKRSMVLFPL 82

to top

>RS5_PROMT (Q46IS5) 30S ribosomal protein S5|
          Length = 208

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           R Q  + E+ E             GG+++S+RA+                      A+ K
Sbjct: 44  RGQERDSEWQERVVQIRRVSKTVKGGKKMSFRAIVVVGNEKGQVGVGVGKAGDVIGAVRK 103

Query: 411 AAVNGRRNLVTVPLTK 458
              +G+++LV VPLT+
Sbjct: 104 GVADGKKHLVRVPLTR 119

to top

>RS5_BUCAP (Q8K966) 30S ribosomal protein S5|
          Length = 167

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 20/73 (27%), Positives = 26/73 (35%)
 Frame = +3

Query: 234 DQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKA 413
           +++ N E  E             GGR  S+ AL                      AI KA
Sbjct: 5   EKKNNSELQEKLITVNRVSKTVKGGRIFSFTALTVVGNGEGRVGFGYGKAREVPAAIQKA 64

Query: 414 AVNGRRNLVTVPL 452
               RRN+VT+PL
Sbjct: 65  MEKARRNMVTIPL 77

to top

>TRPA_DESVH (Q72EU7) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 257

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 8   RREAAAGGGVLYGVSVRGTTGGIHRAGVIRRVAAGITRGRGS-SVRVALRAGLQR 169
           R  AA   G +Y VSV GTTG   R G+   VA  + R R   S+ VAL  G+ R
Sbjct: 165 REYAAVASGYVYVVSVMGTTG--VRDGLPVEVADTLARARQCFSIPVALGFGISR 217

to top

>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta|
           chain 3) (Beta-IV spectrin)
          Length = 2564

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
 Frame = +2

Query: 14  EAAAGGGVLYGVSVRGTTGGIHRAGVIRRVAA------GITRGRGSSVRVALRAG 160
           EAA GGG        GT GG H      R+ A      G   GR + ++ ALR G
Sbjct: 668 EAAGGGGAAGAAGAAGTAGGAHDLSSTARLLAQHKILQGELGGRRALLQQALRCG 722

to top

>RS5_MYCPU (Q98PZ9) 30S ribosomal protein S5|
          Length = 229

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/71 (25%), Positives = 27/71 (38%)
 Frame = +3

Query: 240 RPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAAV 419
           +P  EFSE             GGR+ S+ A                      +AI KA  
Sbjct: 68  KPKTEFSEKIVDIARVTKVVKGGRRFSFSAFVVVGNKKGKVGYGHGKANEVPDAIKKAIK 127

Query: 420 NGRRNLVTVPL 452
           + + +L+TVP+
Sbjct: 128 DAQNHLITVPI 138

to top

>RS5_MYCMO (Q6KI38) 30S ribosomal protein S5|
          Length = 243

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/73 (23%), Positives = 28/73 (38%)
 Frame = +3

Query: 234 DQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKA 413
           +++P  EF E             GGR+ S+ A+                     +AI KA
Sbjct: 82  NKKPEKEFEEKIVNIARVTNVVKGGRRFSFAAVVVVGDKKGRVGYGHGKALEVPDAIKKA 141

Query: 414 AVNGRRNLVTVPL 452
             + + NL+ VP+
Sbjct: 142 VKDAQNNLIRVPI 154

to top

>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 41/161 (25%), Positives = 57/161 (35%), Gaps = 9/161 (5%)
 Frame = +2

Query: 2    SGRREAAAGGGVLYGVSVRGTTGGIHRAGVIRRVAAGITRGRGSSVRVALRAGLQRRVVD 181
            SG R   +G   LY VS    +   H      R      R +GS    A  +       +
Sbjct: 3376 SGGRSGRSGS-FLYQVSTHEQSESAHG-----RTRTSTGRRQGSHHEQARDSSRHSASQE 3429

Query: 182  GEQRVRGESCGSRRHGPGPAPQRRVQRACRA-S*PSHQGRQGWETALLPCPCRGRRHEGT 358
            G+  +RG    SRR   G   ++ V R+  + S  SH   QG   A        R   G+
Sbjct: 3430 GQDTIRGHPGSSRRGRQGSHYEQSVDRSGHSGSHHSHTTSQGRSDA-------SRGQSGS 3482

Query: 359  RWCWRR--------QGQRSLRGHHQGCRERPPQSRYSATNQ 457
            R   R+         G R    HH     +   SR+S + Q
Sbjct: 3483 RSASRQTRNDEQSGDGSRHSWSHHHEASTQADSSRHSQSGQ 3523



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 33/140 (23%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
 Frame = +2

Query: 71   GIHRAGVIRRVAAGITRGRGSSVRVALRAGLQRRVVDG---------EQRVRGESCGSRR 223
            G H +    +  + ++RG+  S  V+ +   +++  DG         E   R +S    +
Sbjct: 1840 GSHHSHTTSQERSDVSRGQSGSRSVSRQTRNEKQSGDGSRHSGSRHHEASSRADSSRHSQ 1899

Query: 224  HGPGPAPQRRVQRACRAS*PSHQGRQGW-ETALLPCPCRGRRHEGTRWCWRRQGQRSLRG 400
             G G +   R  R   +S       QG  E +        R H G+ W   R G R    
Sbjct: 1900 VGQGQSSGPRTSRNQGSSVSQDSDSQGHSEDSERWSGSASRNHLGSAWEQSRDGSRHPGS 1959

Query: 401  HHQ---GCRERPPQSRYSAT 451
            HH+   G       SR S T
Sbjct: 1960 HHEDRAGHGHSADSSRQSGT 1979

to top

>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor|
          Length = 1161

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 23/85 (27%), Positives = 31/85 (36%)
 Frame = -2

Query: 451 SGTVTRLRRPFTAALVMASETSLALPTPTPTCPFMSPTTTRAR*ESXXXXXXXXXXXXXX 272
           S T T    P T+     S+TS    TPT +    +PTT+     S              
Sbjct: 222 STTPTTSTTPTTSTTSTTSQTSTKSTTPTTSSTSTTPTTSTTPTTSTTSTAPTTSTTSTT 281

Query: 271 XXRSLNSSLGRWSRSMSTGSTTFTS 197
              S  S+    S + ST ST+  S
Sbjct: 282 STTSTISTAPTTSTTSSTFSTSSAS 306



 Score = 28.9 bits (63), Expect = 6.8
 Identities = 20/85 (23%), Positives = 29/85 (34%)
 Frame = -2

Query: 445 TVTRLRRPFTAALVMASETSLALPTPTPTCPFMSPTTTRAR*ESXXXXXXXXXXXXXXXX 266
           T T    P T+       TS    TPT +    +PTT+                      
Sbjct: 173 TSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTSTTPTTSTTPT 232

Query: 265 RSLNSSLGRWSRSMSTGSTTFTSNT 191
            S  S+  + S   +T +T+ TS T
Sbjct: 233 TSTTSTTSQTSTKSTTPTTSSTSTT 257

to top

>CEF1_YEAST (Q03654) Pre-mRNA-splicing factor CEF1 (PRP19-associated complex|
           protein 85) (PRP nineteen-associated complex protein 85)
          Length = 590

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +3

Query: 6   DDEKPQPEEVSSTEFQFAAP-----PEGYIEPASFDELPPESPEDVAAAYESLYGPAFSG 170
           +DEK +  E++  E +F         + +IEP S ++ P  S   V  AY +L  P F  
Sbjct: 386 EDEKEEDAEIAEYEKEFENERAMNEEDNFIEPPSQNDAPRVSLVAVPLAYSTLPIPEFKN 445

Query: 171 ESLMG-NNVFEVKVVDPVDMDRDQRPND 251
                 +N + + V + ++ +    P D
Sbjct: 446 NPQSAIDNKYNLLVANAINKEPHMVPED 473

to top

>RS5_THEMA (Q9X1J2) 30S ribosomal protein S5|
          Length = 178

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/68 (26%), Positives = 25/68 (36%)
 Frame = +3

Query: 249 DEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAAVNGR 428
           +EF E             GG+ LS+R +                     EAI KA    +
Sbjct: 13  EEFEEKIIEIRRTSKVTKGGKNLSFRVVAIVGNKNGKVGLGIGKAREVPEAIRKAISAAK 72

Query: 429 RNLVTVPL 452
           RN+V VP+
Sbjct: 73  RNIVEVPV 80

to top

>RS5_PROM9 (Q318K0) 30S ribosomal protein S5|
          Length = 207

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 19/81 (23%), Positives = 33/81 (40%)
 Frame = +3

Query: 213 DPVDMDRDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXX 392
           D  +++RD     ++ E             GG+++S+RA+                    
Sbjct: 41  DSKNLERDS----DWQERVVQIRRVSKTVKGGKKMSFRAIVVVGNEKGQVGVGVGKAGDV 96

Query: 393 SEAITKAAVNGRRNLVTVPLT 455
             A+ K   +G++NLV VPLT
Sbjct: 97  IGAVRKGVSDGKKNLVRVPLT 117

to top

>RR5_PORPU (P51298) Chloroplast 30S ribosomal protein S5|
          Length = 174

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 303 GGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAAVNGRRNLVTVPLTK 458
           GG++LS+R +                      A+ K   + +++LVTVPLTK
Sbjct: 33  GGKKLSFRVILVVGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLVTVPLTK 84

to top

>SOK2_YEAST (P53438) Protein SOK2|
          Length = 785

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 23/92 (25%), Positives = 34/92 (36%)
 Frame = -2

Query: 463 QYLVSGTVTRLRRPFTAALVMASETSLALPTPTPTCPFMSPTTTRAR*ESXXXXXXXXXX 284
           Q L+    + L  P  A +  AS   +      P  P  SPTTT     S          
Sbjct: 624 QQLMGNIASPLSYPRNATMNSASTLGITPADSKPLTP--SPTTTNTNQSSESNVGSIHTG 681

Query: 283 XXXXXXRSLNSSLGRWSRSMSTGSTTFTSNTL 188
                  S ++S  +WS+   +G+T   + TL
Sbjct: 682 ITLPRVESESASHSKWSKEADSGNTVPDNQTL 713

to top

>RS5_LACPL (Q88XW9) 30S ribosomal protein S5|
          Length = 166

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 303 GGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAAVNGRRNLVTVPL 452
           GGR+L + AL                     EAI KA+   ++NL+TVP+
Sbjct: 27  GGRRLRFAALVIVGDHKGHVGFGTGKAQEVPEAIRKASEAAKKNLITVPM 76

to top

>P53_BOVIN (P67939) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 386

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 293 GRQGWETALLPCPCRGRRHEGTRWCWRRQGQRSLRGHHQGCRERPPQS 436
           GR  +E  +  CP R RR E          + +LR   Q C E PP+S
Sbjct: 259 GRNSFEVRVCACPGRDRRTE----------EENLRKKGQSCPEPPPRS 296

to top

>P53_BOSIN (P67938) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 386

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 293 GRQGWETALLPCPCRGRRHEGTRWCWRRQGQRSLRGHHQGCRERPPQS 436
           GR  +E  +  CP R RR E          + +LR   Q C E PP+S
Sbjct: 259 GRNSFEVRVCACPGRDRRTE----------EENLRKKGQSCPEPPPRS 296

to top

>POLS_SFV (P03315) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike gly
          Length = 1253

 Score = 24.3 bits (51), Expect(2) = 4.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 293 LGDSANLHDTLAELVVGALVPVHVDGI--HNFHLEHVVPHQRLAAEGRP 153
           LG+    H+      V   +PV VDG+  H  + + V    +L  EG+P
Sbjct: 632 LGEDPQYHEEWVTAAVERTIPVPVDGMEYHWGNNDPVRLWSQLTTEGKP 680



 Score = 23.5 bits (49), Expect(2) = 4.9
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = -3

Query: 360 RVPSCRRPRQGHGRRAVS---HP*RP 292
           RVP  R P   HG+R V+   HP  P
Sbjct: 599 RVPMAREPTVIHGKREVTLHLHPDHP 624

to top

>ASB16_MOUSE (Q8VHS5) Ankyrin repeat and SOCS box protein 16 (ASB-16)|
          Length = 453

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = +2

Query: 131 SSVRVALRAGLQRRVVDGEQRVRGESCGSRRHGPGPAPQR---RVQRACR 271
           SS   ALR  LQR  +D E R R  +   RRH   P PQ    R +R+CR
Sbjct: 10  SSTLRALR--LQREWLDWEDRRRAAAQQCRRHRDLPCPQAQLLRPRRSCR 57

to top

>RS5_MESFL (Q6F1X7) 30S ribosomal protein S5|
          Length = 206

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/72 (25%), Positives = 24/72 (33%)
 Frame = +3

Query: 237 QRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAA 416
           Q   D+F E             GGR   + A+                     EAI KA 
Sbjct: 37  QFQKDDFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGDKKGQVGLGTGKANEVPEAIKKAV 96

Query: 417 VNGRRNLVTVPL 452
              ++NL+ VPL
Sbjct: 97  KEAKKNLIRVPL 108

to top

>RS5_NITWN (Q3SSU9) 30S ribosomal protein S5|
          Length = 191

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 20/75 (26%), Positives = 29/75 (38%)
 Frame = +3

Query: 228 DRDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAIT 407
           DR++R + EF +             GG++  + AL                     EAI 
Sbjct: 15  DREER-DSEFVDKLVHINRVAKVVKGGKRFGFAALVVIGDQKGRVGFGHGKAREVPEAIR 73

Query: 408 KAAVNGRRNLVTVPL 452
           KA  + +RNL  VPL
Sbjct: 74  KATESAKRNLTRVPL 88

to top

>RS5_FRATT (Q5NHV1) 30S ribosomal protein S5|
          Length = 166

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 19/76 (25%), Positives = 28/76 (36%)
 Frame = +3

Query: 225 MDRDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAI 404
           M  + + N+E  E             GGR +S+ AL                      AI
Sbjct: 1   MSNEVKKNEELIEKLVSVKRHSKTVKGGRIMSFAALTVVGDGKGRIGVGRGKSREVPAAI 60

Query: 405 TKAAVNGRRNLVTVPL 452
            KA  N ++N+V+V L
Sbjct: 61  QKAMENAKKNMVSVNL 76

to top

>RS5_DEIRA (Q9RSL1) 30S ribosomal protein S5|
          Length = 196

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/73 (24%), Positives = 26/73 (35%)
 Frame = +3

Query: 234 DQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKA 413
           D+  + EF E             GGR+  + AL                      AI KA
Sbjct: 10  DRTESSEFEEKMLFVNRTSKTYQGGRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKA 69

Query: 414 AVNGRRNLVTVPL 452
               R+N++TVP+
Sbjct: 70  KAVARKNMITVPV 82

to top

>PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43|
           (EC 3.6.1.-) (Helicase JA1)
          Length = 767

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 176 VDGEQRVRGESCGSRRHGP--GPAPQRRVQRACRAS*PSHQGRQG 304
           ++G+Q VR E CG     P  G  P  + QR    +  SH GR G
Sbjct: 325 LEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPG 369

to top

>RS5_NITOC (Q3J8T1) 30S ribosomal protein S5|
          Length = 170

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 303 GGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAAVNGRRNLVTVPL 452
           GGRQ  + AL                      AI KA  N R+N+++VPL
Sbjct: 29  GGRQFGFSALTVVGDGKGRVGFGRGKAREVPVAIQKAMENARKNMISVPL 78

to top

>RS5_COXBU (Q83EQ9) 30S ribosomal protein S5|
          Length = 168

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 16/50 (32%), Positives = 20/50 (40%)
 Frame = +3

Query: 303 GGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKAAVNGRRNLVTVPL 452
           GGR   + AL                      AI KA  N RRN+++VPL
Sbjct: 29  GGRVFGFSALVVAGDGDGKVGFGLGKAREVPSAIQKATENARRNMISVPL 78

to top

>K1576_HUMAN (Q9HCJ6) Probable oxidoreductase KIAA1576 (EC 1.-.-.-)|
          Length = 419

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +2

Query: 2   SGRREAAAGGGVLYGVSVRGTTGGIHRAGVIRRVAAGITRGRGSSVRVALRAGLQRRVVD 181
           +G+  A  GGG            G HR G  + + A +  G G   ++ L         D
Sbjct: 20  AGKEPAEGGGG-----------DGSHRLGDAQEMRAVVLAGFGGLNKLRLFRKAMPEPQD 68

Query: 182 GEQRVRGESCG 214
           GE ++R ++CG
Sbjct: 69  GELKIRVKACG 79

to top

>RS5_BUCAI (P57574) 30S ribosomal protein S5|
          Length = 167

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/73 (23%), Positives = 27/73 (36%)
 Frame = +3

Query: 234 DQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITKA 413
           +++ +++  E             GGR  S+ AL                      AI KA
Sbjct: 5   EKKNHNDLQEKLITVNRVSKTVKGGRIFSFTALTVVGNGDGKVGFGYGKAREVPAAIQKA 64

Query: 414 AVNGRRNLVTVPL 452
               RRN++T+PL
Sbjct: 65  MEQARRNMITIPL 77

to top

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2014

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 57  AAPPEGYIEPASFDELPPESPEDVAAAYESLYGP 158
           ++PP  + EP+ F +LP  S E +  + +S++ P
Sbjct: 789 SSPPRQFPEPSFFQDLPRASTESLVPSTDSMHEP 822

to top

>ENPL_CATRO (P35016) Endoplasmin homolog precursor (GRP94 homolog)|
          Length = 817

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 69  EGYIEPASFDELPPESPEDVAAAYESLYGPAFSGESLMGNNVF 197
           EG +E  +F  LPP++P+D+   YES Y    S   L    VF
Sbjct: 389 EGDVEFKAFTLLPPKAPQDL---YESYYNSNKSNLKLYVRRVF 428

to top

>OAM_ASCSU (Q01456) Ovarian abundant message protein (Protein OAM)|
          Length = 590

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 32  GVLYGVSVRGTTGGIHRAGVIRRVAAGITRGRGSSVRVALRAGLQRR 172
           GVL    V    G + RAGV+RR  AG+ R  G    V  RAG+ RR
Sbjct: 363 GVLRRAGVLRRAGVLRRAGVLRR--AGVLRRAG----VLRRAGVLRR 403



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 32  GVLYGVSVRGTTGGIHRAGVIRRVAAGITRGRGSSVRVALRAGLQRR 172
           GVL    V    G + RAGV+RR  AG+ R  G    V  RAG+ RR
Sbjct: 357 GVLRRAGVLRRAGVLRRAGVLRR--AGVLRRAG----VLRRAGVLRR 397



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 32  GVLYGVSVRGTTGGIHRAGVIRRVAAGITRGRGSSVRVALRAGLQRR 172
           GVL    V    G + RAGV+RR  AG+ R  G    V  RAG+ RR
Sbjct: 351 GVLRRAGVLRRAGVLRRAGVLRR--AGVLRRAG----VLRRAGVLRR 391



 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 32  GVLYGVSVRGTTGGIHRAGVIRRVAAGITRGRGSSVRVALRAGLQRR 172
           GVL    V    G + RAGV+RR  AG+ R  G    V  RAG+ RR
Sbjct: 345 GVLRRAGVLRRAGVLRRAGVLRR--AGVLRRAG----VLRRAGVLRR 385

to top

>RS5_MYCMS (Q6MSP2) 30S ribosomal protein S5|
          Length = 254

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/74 (24%), Positives = 26/74 (35%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           + ++  DEF E             GGR   + A+                     EAI K
Sbjct: 40  KSKQVKDEFEEKVVTIRRVTKVTKGGRHFRFAAVVVVGNKKGLVGMGTGKANEVPEAIKK 99

Query: 411 AAVNGRRNLVTVPL 452
           A    ++NLV+V L
Sbjct: 100 AIKEAKKNLVSVTL 113

to top

>BASP_BOVIN (P80724) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 226

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
 Frame = +3

Query: 3   QDDEKPQPEE-VSSTEFQFAAPPEGYIEPASFDELPPESPEDVAAAYESLYGPAFSGESL 179
           QD  KP+ +E     E      P+   EP    E  PE P+D      +  GP+  G++ 
Sbjct: 63  QDTTKPEDKEGEKDAEAAKEDAPKAEPEPTEGAEGKPEPPKDAEQEPAAASGPSTGGDAP 122

Query: 180 MGNNVFEVKVVDPVDMDRDQRPND 251
             +     +   P   D+ +   D
Sbjct: 123 KASEAEAAEPAAPTKDDKSKEGGD 146

to top

>RS5_MYCHJ (Q4AAF7) 30S ribosomal protein S5|
          Length = 216

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/74 (22%), Positives = 26/74 (35%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           RD+    EF E             GGR+ S+ A                      +A+ K
Sbjct: 49  RDKNSKPEFEERVIAIHRVVKVVKGGRRFSFSAFAVVGNKKGRVGFGHGKANEVQDAVKK 108

Query: 411 AAVNGRRNLVTVPL 452
           A  + +  LV+VP+
Sbjct: 109 AIKDAQNRLVSVPI 122

to top

>RS5_MYCH7 (Q4A8I8) 30S ribosomal protein S5|
          Length = 216

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/74 (22%), Positives = 26/74 (35%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           RD+    EF E             GGR+ S+ A                      +A+ K
Sbjct: 49  RDKNSKPEFEERVIAIHRVVKVVKGGRRFSFSAFAVVGNKKGRVGFGHGKANEVQDAVKK 108

Query: 411 AAVNGRRNLVTVPL 452
           A  + +  LV+VP+
Sbjct: 109 AIKDAQNRLVSVPI 122

to top

>RS5_MYCH2 (Q601J7) 30S ribosomal protein S5|
          Length = 216

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/74 (22%), Positives = 26/74 (35%)
 Frame = +3

Query: 231 RDQRPNDEFSEXXXXXXXXXXXXXGGRQLSYRALXXXXXXXXXXXXXXXXXXXXSEAITK 410
           RD+    EF E             GGR+ S+ A                      +A+ K
Sbjct: 49  RDKNSKPEFEERVIAIHRVVKVVKGGRRFSFSAFAVVGNKKGRVGFGHGKANEVQDAVKK 108

Query: 411 AAVNGRRNLVTVPL 452
           A  + +  LV+VP+
Sbjct: 109 AIKDAQNRLVSVPI 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,137,619
Number of Sequences: 219361
Number of extensions: 1211215
Number of successful extensions: 5201
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5171
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result