ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet93e09 |
|---|---|
| Clone Library Name | barley_pub |
>DHH1_CRYNV (Q58Z64) ATP-dependent RNA helicase VAD1 (EC 3.6.1.-) (Virulence| associated DEAD box protein 1) Length = 616 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = -3 Query: 339 PAACLEPRRQPLPVPALAEVEAAQERPARGAQRQHAAVERHQ 214 PA E R P P PA AQ++P + QRQH V HQ Sbjct: 412 PAMVEEERESPPPKPAAIAAPPAQQQPQQ-RQRQHPPVPSHQ 452
>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)| Length = 625 Score = 32.3 bits (72), Expect = 0.28 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = -3 Query: 339 PAACLEPRRQPLPVPALAEVEAAQERPARGAQRQHAAVERHQ 214 PA E R P P PA AQ++P + QRQH V HQ Sbjct: 412 PAMVEEERESPPPKPAAIAAPPAQQQPQQ-RQRQHPPVPSHQ 452 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Frame = -3 Query: 384 APAQVRSRHGEQQQRPAACLEPRRQPLPV------PALAEVEAAQERPARGAQRQHAAVE 223 APA V +PAA P Q P P + +AAQ+ PA +Q + Sbjct: 411 APAMVEEERESPPPKPAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPVQQQQQQQ 470 Query: 222 RHQE 211 + Q+ Sbjct: 471 QQQQ 474
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 32.0 bits (71), Expect = 0.37 Identities = 21/43 (48%), Positives = 23/43 (53%) Frame = -3 Query: 384 APAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQERPA 256 APA+ + Q RPAA R P P PA AE AA ERPA Sbjct: 64 APAKPGAPSPAQAARPAA----PRPPAPKPAAAERPAAAERPA 102
>TUB8_SOLTU (P33191) Induced stolen tip protein TUB8 (Fragment)| Length = 211 Score = 30.0 bits (66), Expect = 1.4 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 336 AACLEPRRQPLPVPALAEVEAAQERPARGAQRQHAAVER 220 AA +EP P+ PA AE AA E P A + AA + Sbjct: 104 AAAVEPVAAPVEEPAAAEEPAAAEEPVAAAPVEEAAAPK 142
>YBV8_YEAST (P38266) Protein YBR108W| Length = 947 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = +1 Query: 76 RHPSFQLPSTHTRRAHPRNAGMDVEAPKDDEQRPAPPARG 195 RH +PS HT + P A + + P+++ + P PP+RG Sbjct: 525 RHGLDSVPSEHTTKNAPERA-VPILPPRNNVEPPPPPSRG 563
>SALM_DROME (P39770) Homeotic protein spalt-major| Length = 1365 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = -3 Query: 381 PAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQER 262 P + + + E +Q A C EP +PLP+ + E +E+ Sbjct: 609 PVEEKDQREEHEQEMAECSEPEPEPLPLEVRIKEERVEEQ 648
>STX18_RAT (Q68FW4) Syntaxin-18| Length = 334 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = +1 Query: 64 VLDKRHPSFQLPSTHTRRAHPRNAGMDVEAPKDDEQRPA 180 V+DK+ S P HT+R P + A +D E++PA Sbjct: 160 VVDKKRLSKLEPEPHTKRKEPASEKSSHNASQDSEEKPA 198
>RIHC_ECOL6 (P0C0W2) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 29.6 bits (65), Expect = 1.8 Identities = 16/43 (37%), Positives = 20/43 (46%) Frame = -3 Query: 390 LRAPAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQER 262 +RAP S HGE +E RQPL +PA + A R Sbjct: 71 VRAPRDAASVHGESGMAGYDFVEHNRQPLGIPAFLAIRDALMR 113
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3664 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 49 ASKNGVLDKRHPSFQLPSTHTRRAHPRNAGMDVEAPKDDEQRPAP 183 ASKN D HP LP + TRR + R+ V A D + +P Sbjct: 1879 ASKNSAADLEHPEPSLPLSRTRRRNVRS----VYATMGDHENRSP 1919
>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21| Length = 2189 Score = 28.9 bits (63), Expect = 3.1 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 7/50 (14%) Frame = +1 Query: 79 HPSFQLPST----HTRRA---HPRNAGMDVEAPKDDEQRPAPPARGKAMQ 207 HP+ QLP H+ +A HP+ +AP+ Q+P PP + +A Q Sbjct: 1948 HPAPQLPQAQPPQHSHQAQAQHPQT--QQAQAPQAQAQQPQPPQQAQAQQ 1995
>SETBP_HUMAN (Q9Y6X0) SET-binding protein (SEB)| Length = 1542 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%) Frame = -3 Query: 381 PAQVRSRHGEQQQRPAACLEPRRQP---LPVPALAEVEAAQERPARGAQRQ 238 P R G+++ +P A +P +Q P+P EV+A ++R +RG++ + Sbjct: 1489 PLPKTPRGGKRKHKPQAPAQPPQQSPPQQPLPQEEEVKAKRQRKSRGSESE 1539
>IF2_BORPE (Q7VYR2) Translation initiation factor IF-2| Length = 997 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Frame = -3 Query: 381 PAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQE--RPARGAQRQHAAVER 220 P Q + + PAA EP QP P P A +A E PA+ E+ Sbjct: 165 PEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQ 220
>IF2_BORPA (Q7W9A5) Translation initiation factor IF-2| Length = 969 Score = 28.5 bits (62), Expect = 4.1 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Frame = -3 Query: 381 PAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQE--RPARGAQRQHAAVER 220 P Q + + PAA EP QP P P A +A E PA+ E+ Sbjct: 137 PEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQ 192
>UPPP2_ACIAD (Q6FDP8) Undecaprenyl-diphosphatase 2 (EC 3.6.1.27) (Undecaprenyl| pyrophosphate phosphatase 2) (Bacitracin resistance protein 2) Length = 285 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = +1 Query: 304 KWLSAWLETGGWPL 345 KWLSAWLE G W L Sbjct: 256 KWLSAWLEHGRWYL 269
>HHIP_HUMAN (Q96QV1) Hedgehog-interacting protein precursor (HHIP) (HIP)| Length = 700 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Frame = +2 Query: 311 CRRGSRQAAGRCCCSP-WRLRTCAGAR 388 CR G G+CCCSP W C A+ Sbjct: 612 CRNGYCTPTGKCCCSPGWEGDFCRTAK 638
>ZN343_HUMAN (Q6P1L6) Zinc finger protein 343| Length = 599 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Frame = +1 Query: 70 DKRHPSFQLPSTHTRR-AHPRNAGMDVEAPKDDEQRPAPPARGKAMQRL----LVALNC 231 ++R S PS R+ A PR M VE QRP P K ++ L A+NC Sbjct: 185 EERETSRAFPSPLQRQSASPRKGNMVVETEPSSAQRPNPVQLDKGLKELETLRFGAINC 243
>HHIP_MOUSE (Q7TN16) Hedgehog-interacting protein precursor (HHIP) (HIP)| Length = 700 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Frame = +2 Query: 311 CRRGSRQAAGRCCCSP-WRLRTCAGAR 388 CR G G+CCCSP W C A+ Sbjct: 612 CRNGYYTPTGKCCCSPGWEGDFCRIAK 638
>RIHC_SHIFL (Q83MH0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -3 Query: 390 LRAPAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQER 262 +RAP S HGE +E R+PL +PA + A R Sbjct: 71 VRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMR 113
>RIHC_ECOLI (P22564) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -3 Query: 390 LRAPAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQER 262 +RAP S HGE +E R+PL +PA + A R Sbjct: 71 VRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMR 113
>RIHC_ECO57 (Q8XA41) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -3 Query: 390 LRAPAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQER 262 +RAP S HGE +E R+PL +PA + A R Sbjct: 71 VRAPRDAASVHGESGMAGYDFVEHNRKPLGIPAFLAIRDALMR 113
>DNJB2_HUMAN (P25686) DnaJ homolog subfamily B member 2 (Heat shock 40 kDa| protein 3) (DnaJ protein homolog 1) (HSJ-1) Length = 351 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 9/55 (16%) Frame = -3 Query: 372 VRSRHG--EQQQRPAACL-------EPRRQPLPVPALAEVEAAQERPARGAQRQH 235 V SR G + QQ PA+C + Q +L+E+EAA ++PA G + QH Sbjct: 227 VTSRSGGTQVQQTPASCPLDSDLSEDEDLQLAMAYSLSEMEAAGKKPAGGREAQH 281
>TRX_DROVI (Q24742) Protein trithorax| Length = 3828 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Frame = -3 Query: 384 APAQVRSRHGEQQQRPA--------ACLEPRRQPLPVPALAEVEAAQE---RPARGAQRQ 238 A + +H +QQQ PA A L+ R P P P E + Q+ + + Q+Q Sbjct: 2956 ATSAASMQHHQQQQSPAAINQVAKVALLQQRLAPAPQPQQQEPQEEQQHLHQQQQQQQQQ 3015 Query: 237 HAAVERHQE 211 +++HQ+ Sbjct: 3016 QQHMQQHQQ 3024
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/48 (33%), Positives = 19/48 (39%) Frame = -3 Query: 381 PAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQERPARGAQRQ 238 P + R E Q P L+P QP P P L Q +P Q Q Sbjct: 460 PEEKEERESEPQPEPVRHLQPLPQPEPEPELQPEPQPQLQPEPQLQPQ 507
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 74 NAIHPSSYPALTHDARTLVTQAWT 145 + IHPSS P TH + L T+A T Sbjct: 4291 STIHPSSTPETTHTSTVLTTKATT 4314 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +2 Query: 74 NAIHPSSYPALTHDARTLVTQAWT 145 + IHPSS P TH + L T+A T Sbjct: 3064 STIHPSSTPETTHTSTVLTTKATT 3087
>NAB2_YEAST (P32505) Nuclear polyadenylated RNA-binding protein NAB2| Length = 525 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -3 Query: 378 AQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQERPARGAQRQ 238 AQ + + +QQQ A +P++QP P + Q++P + Q+Q Sbjct: 105 AQQQQQQQQQQQPDIAQQQPQQQPQQQPQQQPQQQPQQQPQQQPQQQ 151
>NAC68_ORYSA (Q52QH4) NAC domain-containing protein 68 (ONAC068)| Length = 318 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -3 Query: 330 CLEPRRQPLPVPALAEVE 277 C + RQPLPVP +AEV+ Sbjct: 40 CRKVARQPLPVPIIAEVD 57
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = -3 Query: 375 QVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQERPAR 253 Q++ E+ + P + + P R P P P + +V + + AR Sbjct: 721 QIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSAR 761
>MINC_XANCP (Q8PBJ4) Probable septum site-determining protein minC| Length = 249 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -3 Query: 345 QRPAACLEPRRQPLPVPALAEVEAAQERPARGAQRQHA 232 Q A + P P P PA AE A RPA G +++A Sbjct: 112 QYETAAVSPPPPPPPPPARAEPAAPVARPAPGRMQRNA 149
>PP16A_MOUSE (Q923M0) Protein phosphatase 1 regulatory subunit 16A (Myosin| phosphatase targeting subunit 3) Length = 524 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -3 Query: 378 AQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAA 271 A + HGE+ + A L PR+ L P++A +EAA Sbjct: 44 AHSKKGHGERPWKEVAGLRPRKHVLFPPSVALLEAA 79
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = -3 Query: 375 QVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQERPAR 253 Q++ E+ + P + + P R P P P + +V + + AR Sbjct: 718 QIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSAR 758
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = -3 Query: 375 QVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQERPAR 253 Q++ E+ + P + + P R P P P + +V + + AR Sbjct: 720 QIKQEPAEEYETPESPVPPARSPSPPPKVVDVPSHASQSAR 760
>VS48_BRSV (P22051) Satellite RNA 48 kDa protein| Length = 424 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 9/34 (26%) Frame = -1 Query: 227 LSATRSRCIALPRAGGA---------GRCSSSLG 153 LS + RC+ LPR GG GRCS++ G Sbjct: 40 LSDSEGRCVVLPRDGGGRKRKSNGSQGRCSNNPG 73
>Y2079_MYCTU (Q10687) Hypothetical protein Rv2079/MT2140| Length = 656 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -3 Query: 390 LRAPAQVRSRHGEQQQRPAACLEPRRQP---LPVPALAEVE 277 LR+ A + S HG+ +PR QP + +P L VE Sbjct: 583 LRSMADIASGHGDALASDGMLAQPRHQPGVEIDIPGLGSVE 623
>RIHC_SHISS (Q3Z5Y0) Nonspecific ribonucleoside hydrolase rihC (EC 3.2.-.-)| (Purine/pyrimidine ribonucleoside hydrolase) Length = 304 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = -3 Query: 390 LRAPAQVRSRHGEQQQRPAACLEPRRQPLPVPALAEVEAAQER 262 +RAP S HGE +E R+P+ +PA + A R Sbjct: 71 VRAPRDAASVHGESGMAGYDFVEHNRKPIGIPAFLAIRDALMR 113 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,595,394 Number of Sequences: 219361 Number of extensions: 710774 Number of successful extensions: 3009 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2829 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2999 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
