ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet93e05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA, complete cds Length = 2105 Score = 527 bits (266), Expect = e-146 Identities = 278/282 (98%) Strand = Plus / Plus Query: 164 gatcggtaccagacacagtgccaagatggggagcttccacaagaccacctttgttctcct 223 |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| Sbjct: 1 gatcggtaccagacacagtgccaagatggggaacttgcacaagaccacctttgttctcct 60 Query: 224 catgttctgcttggtggcgttgggaagcgcggattatctcaagtacaaggatccgaagca 283 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 catgttctgcttggcggcgttgggaagcgcggattatctcaagtacaaggatccgaagca 120 Query: 284 gcctcttggcgttcgcatcaaggatctgcttggtcggatgactctcgctgaaaagatagg 343 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gcctcttggcgttcgcatcaaggatctgcttggtcggatgactctcgctgaaaagatagg 180 Query: 344 ccagatgacccagattgagagggagaatgccacggcagaggccatgtccaagtacttcat 403 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ccagatgacccagatcgagagggagaatgccacggcagaggccatgtccaagtacttcat 240 Query: 404 aggtagcgtactgagtggtggaggcagtgtgccttctcctca 445 |||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 aggtagcgtactgagtggtggaggcagtgtgccttctcctca 282
>gb|AY586531.1| Secale cereale cell wall beta-glucosidase mRNA, complete cds Length = 2215 Score = 525 bits (265), Expect = e-146 Identities = 335/357 (93%), Gaps = 1/357 (0%) Strand = Plus / Plus Query: 89 cctgagttcgtgtttcgtgcgcatgcggcggattgcttgctgccccttttgaggtctata 148 |||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| Sbjct: 84 cctgagttcgtgtt-cgtgcgcatgcggcggattgctagctgctccttttgaggtctata 142 Query: 149 tatacagtcggtggtgatcggtaccagacacagtgccaagatggggagcttccacaagac 208 ||| | ||||||||||||| |||||||| ||||||||||||||||| || |||||||| Sbjct: 143 catatactcggtggtgatcgacaccagacagagtgccaagatggggagtttgcacaagac 202 Query: 209 cacctttgttctcctcatgttctgcttggtggcgttgggaagcgcggattatctcaagta 268 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct: 203 cacctttgttctcctcatgttctgcttggcggcgttgggaagcgcggatcatctcaagta 262 Query: 269 caaggatccgaagcagcctcttggcgttcgcatcaaggatctgcttggtcggatgactct 328 ||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| Sbjct: 263 caaggatccgaagcagcctattggtgtccgcatcaaggatctgcttggtcggatgactct 322 Query: 329 cgctgaaaagataggccagatgacccagattgagagggagaatgccacggcagaggccat 388 ||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 323 ggctgaaaagattggccagatgacccagattgagagagagaatgccacagcagaggccat 382 Query: 389 gtccaagtacttcataggtagcgtactgagtggtggaggcagtgtgccttctcctca 445 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 383 gtccaagtacttcataggtagcgtactcagtggtggaggcagcgtgccttctcctca 439 Score = 60.0 bits (30), Expect = 7e-06 Identities = 47/50 (94%), Gaps = 2/50 (4%) Strand = Plus / Plus Query: 21 aggcagcaacacgctagacatctttttgccggtttcatcttgctcttgcc 70 |||||||||| |||||||||| ||||||||| |||||||||||||||||| Sbjct: 37 aggcagcaac-cgctagacat-tttttgccgatttcatcttgctcttgcc 84
>gb|AY091513.1| Triticum aestivum beta-D-glucan exohydrolase mRNA, complete cds Length = 2116 Score = 456 bits (230), Expect = e-125 Identities = 242/246 (98%) Strand = Plus / Plus Query: 201 cacaagaccacctttgttctcctcatgttctgcttggtggcgttgggaagcgcggattat 260 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 13 cacaagaccacctttgttctcctcatgttctgcttggcggcgttgggaagcgcggattat 72 Query: 261 ctcaagtacaaggatccgaagcagcctcttggcgttcgcatcaaggatctgcttggtcgg 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 73 ctcaagtacaaggatccgaagcagcctcttggcgttcgcatcaaggatctgcttggtcgg 132 Query: 321 atgactctcgctgaaaagataggccagatgacccagattgagagggagaatgccacggca 380 ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct: 133 atgaccctcgctgaaaagatcggccagatgacccagattgagagggagaatgccacagca 192 Query: 381 gaggccatgtccaagtacttcataggtagcgtactgagtggtggaggcagtgtgccttct 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 193 gaggccatgtccaagtacttcataggtagcgtactgagtggtggaggcagtgtgccttct 252 Query: 441 cctcag 446 |||||| Sbjct: 253 cctcag 258
>ref|XM_469751.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2156 Score = 190 bits (96), Expect = 3e-45 Identities = 222/264 (84%) Strand = Plus / Plus Query: 183 gccaagatggggagcttccacaagaccacctttgttctcctcatgttctgcttggtggcg 242 |||||||||||||| || |||||| || || ||||||||||||| || || | || Sbjct: 273 gccaagatggggagtttgcacaagttcagtgttattctcctcatgttatgttttgctacg 332 Query: 243 ttgggaagcgcggattatctcaagtacaaggatccgaagcagcctcttggcgttcgcatc 302 ||||| ||||| | ||| ||||||| ||||||||||||||||| | ||||| || Sbjct: 333 ttggggagcgctcagtatgtcaagtataaggatccgaagcagcccgtctctgttcgtgtc 392 Query: 303 aaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagattgag 362 ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 393 aaggatctgctcggccggatgactctcgctgagaagattggccagatgacccaaatcgag 452 Query: 363 agggagaatgccacggcagaggccatgtccaagtacttcataggtagcgtactgagtggt 422 ||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||| Sbjct: 453 agggagaatgccacggcggagcagattgccaagtacttcataggtagtgtactgagtggt 512 Query: 423 ggaggcagtgtgccttctcctcag 446 ||||||||||||||| |||||||| Sbjct: 513 ggaggcagtgtgcctgctcctcag 536
>dbj|AK122100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125I15, full insert sequence Length = 2144 Score = 190 bits (96), Expect = 3e-45 Identities = 222/264 (84%) Strand = Plus / Plus Query: 183 gccaagatggggagcttccacaagaccacctttgttctcctcatgttctgcttggtggcg 242 |||||||||||||| || |||||| || || ||||||||||||| || || | || Sbjct: 13 gccaagatggggagtttgcacaagttcagtgttattctcctcatgttatgttttgctacg 72 Query: 243 ttgggaagcgcggattatctcaagtacaaggatccgaagcagcctcttggcgttcgcatc 302 ||||| ||||| | ||| ||||||| ||||||||||||||||| | ||||| || Sbjct: 73 ttggggagcgctcagtatgtcaagtataaggatccgaagcagcccgtctctgttcgtgtc 132 Query: 303 aaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagattgag 362 ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 133 aaggatctgctcggccggatgactctcgctgagaagattggccagatgacccaaatcgag 192 Query: 363 agggagaatgccacggcagaggccatgtccaagtacttcataggtagcgtactgagtggt 422 ||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||| Sbjct: 193 agggagaatgccacggcggagcagattgccaagtacttcataggtagtgtactgagtggt 252 Query: 423 ggaggcagtgtgccttctcctcag 446 ||||||||||||||| |||||||| Sbjct: 253 ggaggcagtgtgcctgctcctcag 276
>dbj|AK065044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001H22, full insert sequence Length = 3093 Score = 190 bits (96), Expect = 3e-45 Identities = 222/264 (84%) Strand = Plus / Plus Query: 183 gccaagatggggagcttccacaagaccacctttgttctcctcatgttctgcttggtggcg 242 |||||||||||||| || |||||| || || ||||||||||||| || || | || Sbjct: 963 gccaagatggggagtttgcacaagttcagtgttattctcctcatgttatgttttgctacg 1022 Query: 243 ttgggaagcgcggattatctcaagtacaaggatccgaagcagcctcttggcgttcgcatc 302 ||||| ||||| | ||| ||||||| ||||||||||||||||| | ||||| || Sbjct: 1023 ttggggagcgctcagtatgtcaagtataaggatccgaagcagcccgtctctgttcgtgtc 1082 Query: 303 aaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagattgag 362 ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 1083 aaggatctgctcggccggatgactctcgctgagaagattggccagatgacccaaatcgag 1142 Query: 363 agggagaatgccacggcagaggccatgtccaagtacttcataggtagcgtactgagtggt 422 ||||||||||||||||| ||| || ||||||||||||||||||| |||||||||||| Sbjct: 1143 agggagaatgccacggcggagcagattgccaagtacttcataggtagtgtactgagtggt 1202 Query: 423 ggaggcagtgtgccttctcctcag 446 ||||||||||||||| |||||||| Sbjct: 1203 ggaggcagtgtgcctgctcctcag 1226
>gb|AY103742.1| Zea mays PCO090119 mRNA sequence Length = 2612 Score = 176 bits (89), Expect = 4e-41 Identities = 191/225 (84%) Strand = Plus / Plus Query: 222 ctcatgttctgcttggtggcgttgggaagcgcggattatctcaagtacaaggatccgaag 281 |||||||||||| || | ||| |||| || ||||| || |||||||||||||| || ||| Sbjct: 417 ctcatgttctgcctgctagcgctggggagagcggagtacctcaagtacaaggacccaaag 476 Query: 282 cagcctcttggcgttcgcatcaaggatctgcttggtcggatgactctcgctgaaaagata 341 ||||| | | |||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 477 cagcccgtcgctgttcgcatcaaggacctgctgggtcggatgactctcgccgaaaagatc 536 Query: 342 ggccagatgacccagattgagagggagaatgccacggcagaggccatgtccaagtacttc 401 ||||||||||| ||||| |||||||| || |||||||| || || || |||| |||||| Sbjct: 537 ggccagatgacgcagatcgagagggaaaacgccacggccgacgcgctggccaaatacttc 596 Query: 402 ataggtagcgtactgagtggtggaggcagtgtgccttctcctcag 446 ||||||||||| ||||| || |||||||| |||||| |||||||| Sbjct: 597 ataggtagcgtgctgagcggcggaggcagcgtgcctgctcctcag 641
>gb|AF225411.1|AF225411 Zea mays exoglucanase precursor (exg1) gene, complete cds Length = 4193 Score = 147 bits (74), Expect = 4e-32 Identities = 158/186 (84%) Strand = Plus / Plus Query: 222 ctcatgttctgcttggtggcgttgggaagcgcggattatctcaagtacaaggatccgaag 281 |||||||||||| || | ||| |||| || ||||| || |||||||||||||| |||||| Sbjct: 716 ctcatgttctgcctgctagcgctggggagagcggagtacctcaagtacaaggacccgaag 775 Query: 282 cagcctcttggcgttcgcatcaaggatctgcttggtcggatgactctcgctgaaaagata 341 ||||| | | |||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 776 cagcccgtcgctgttcgcatcaaggacctgctgggtcggatgactctcgccgaaaagatc 835 Query: 342 ggccagatgacccagattgagagggagaatgccacggcagaggccatgtccaagtacttc 401 ||||||||||| ||||| |||||||| || |||||||| || || || |||| |||||| Sbjct: 836 ggccagatgacgcagatcgagagggaaaacgccacggccgacgcgctggccaaatacttc 895 Query: 402 ataggt 407 |||||| Sbjct: 896 ataggt 901
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 129 bits (65), Expect = 8e-27 Identities = 185/225 (82%) Strand = Plus / Plus Query: 183 gccaagatggggagcttccacaagaccacctttgttctcctcatgttctgcttggtggcg 242 |||||||||||||| || |||||| || || ||||||||||||| || || | || Sbjct: 30561539 gccaagatggggagtttgcacaagttcagtgttattctcctcatgttatgttttgctacg 30561598 Query: 243 ttgggaagcgcggattatctcaagtacaaggatccgaagcagcctcttggcgttcgcatc 302 ||||| ||||| | ||| ||||||| ||||||||||||||||| | ||||| || Sbjct: 30561599 ttggggagcgctcagtatgtcaagtataaggatccgaagcagcccgtctctgttcgtgtc 30561658 Query: 303 aaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagattgag 362 ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 30561659 aaggatctgctcggccggatgactctcgctgagaagattggccagatgacccaaatcgag 30561718 Query: 363 agggagaatgccacggcagaggccatgtccaagtacttcataggt 407 ||||||||||||||||| ||| || ||||||||||||||||| Sbjct: 30561719 agggagaatgccacggcggagcagattgccaagtacttcataggt 30561763 Score = 69.9 bits (35), Expect = 7e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 404 aggtagcgtactgagtggtggaggcagtgtgccttctcctcag 446 |||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 30561857 aggtagtgtactgagtggtggaggcagtgtgcctgctcctcag 30561899 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 318 cggatgactctcgctgaaaagataggccagatgacccagat 358 |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 30592877 cggatgacgctcgcggagaagatcggccagatgacgcagat 30592917
>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete sequence Length = 139872 Score = 129 bits (65), Expect = 8e-27 Identities = 185/225 (82%) Strand = Plus / Plus Query: 183 gccaagatggggagcttccacaagaccacctttgttctcctcatgttctgcttggtggcg 242 |||||||||||||| || |||||| || || ||||||||||||| || || | || Sbjct: 93112 gccaagatggggagtttgcacaagttcagtgttattctcctcatgttatgttttgctacg 93171 Query: 243 ttgggaagcgcggattatctcaagtacaaggatccgaagcagcctcttggcgttcgcatc 302 ||||| ||||| | ||| ||||||| ||||||||||||||||| | ||||| || Sbjct: 93172 ttggggagcgctcagtatgtcaagtataaggatccgaagcagcccgtctctgttcgtgtc 93231 Query: 303 aaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagattgag 362 ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 93232 aaggatctgctcggccggatgactctcgctgagaagattggccagatgacccaaatcgag 93291 Query: 363 agggagaatgccacggcagaggccatgtccaagtacttcataggt 407 ||||||||||||||||| ||| || ||||||||||||||||| Sbjct: 93292 agggagaatgccacggcggagcagattgccaagtacttcataggt 93336 Score = 69.9 bits (35), Expect = 7e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 404 aggtagcgtactgagtggtggaggcagtgtgccttctcctcag 446 |||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 93430 aggtagtgtactgagtggtggaggcagtgtgcctgctcctcag 93472 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 318 cggatgactctcgctgaaaagataggccagatgacccagat 358 |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 124450 cggatgacgctcgcggagaagatcggccagatgacgcagat 124490
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 129 bits (65), Expect = 8e-27 Identities = 185/225 (82%) Strand = Plus / Plus Query: 183 gccaagatggggagcttccacaagaccacctttgttctcctcatgttctgcttggtggcg 242 |||||||||||||| || |||||| || || ||||||||||||| || || | || Sbjct: 30652961 gccaagatggggagtttgcacaagttcagtgttattctcctcatgttatgttttgctacg 30653020 Query: 243 ttgggaagcgcggattatctcaagtacaaggatccgaagcagcctcttggcgttcgcatc 302 ||||| ||||| | ||| ||||||| ||||||||||||||||| | ||||| || Sbjct: 30653021 ttggggagcgctcagtatgtcaagtataaggatccgaagcagcccgtctctgttcgtgtc 30653080 Query: 303 aaggatctgcttggtcggatgactctcgctgaaaagataggccagatgacccagattgag 362 ||||||||||| || ||||||||||||||||| ||||| |||||||||||||| || ||| Sbjct: 30653081 aaggatctgctcggccggatgactctcgctgagaagattggccagatgacccaaatcgag 30653140 Query: 363 agggagaatgccacggcagaggccatgtccaagtacttcataggt 407 ||||||||||||||||| ||| || ||||||||||||||||| Sbjct: 30653141 agggagaatgccacggcggagcagattgccaagtacttcataggt 30653185 Score = 69.9 bits (35), Expect = 7e-09 Identities = 41/43 (95%) Strand = Plus / Plus Query: 404 aggtagcgtactgagtggtggaggcagtgtgccttctcctcag 446 |||||| ||||||||||||||||||||||||||| |||||||| Sbjct: 30653279 aggtagtgtactgagtggtggaggcagtgtgcctgctcctcag 30653321 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 318 cggatgactctcgctgaaaagataggccagatgacccagat 358 |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 30684299 cggatgacgctcgcggagaagatcggccagatgacgcagat 30684339
>gb|AY357946.1| Lilium longiflorum exo-beta-glucanase (ExoI) mRNA, complete cds Length = 2134 Score = 50.1 bits (25), Expect = 0.006 Identities = 37/41 (90%) Strand = Plus / Plus Query: 396 tacttcataggtagcgtactgagtggtggaggcagtgtgcc 436 |||||||||||||| || ||||||||||||| |||||||| Sbjct: 294 tacttcataggtagtttattgagtggtggaggtagtgtgcc 334
>ref|NM_114572.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds AT3G47050 mRNA, complete cds Length = 1928 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 317 tcggatgactctcgctgaaaagataggccagatgac 352 |||||||||||| |||||||| || ||||||||||| Sbjct: 110 tcggatgactctggctgaaaaaatcggccagatgac 145
>gb|AY335818.1| Gossypium hirsutum beta-D-glucosidase mRNA, complete cds Length = 2071 Score = 48.1 bits (24), Expect = 0.025 Identities = 39/44 (88%) Strand = Plus / Plus Query: 319 ggatgactctcgctgaaaagataggccagatgacccagattgag 362 |||||||| | ||||||||||| ||||| ||||| ||||||||| Sbjct: 235 ggatgactttggctgaaaagattggccaaatgactcagattgag 278 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 396 tacttcataggtagcgtactgagtggtggaggcagtgtgcc 436 |||||||| || || || |||||||||||||| |||||||| Sbjct: 312 tacttcattgggagtgttctgagtggtggagggagtgtgcc 352
>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12 Length = 140680 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Minus Query: 317 tcggatgactctcgctgaaaagataggccagatgac 352 |||||||||||| |||||||| || ||||||||||| Sbjct: 48208 tcggatgactctggctgaaaaaatcggccagatgac 48173
>ref|NM_191428.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1992 Score = 46.1 bits (23), Expect = 0.098 Identities = 41/47 (87%) Strand = Plus / Plus Query: 396 tacttcataggtagcgtactgagtggtggaggcagtgtgccttctcc 442 |||||||||||||| ||| |||||||||| || ||||| ||| |||| Sbjct: 211 tacttcataggtagtgtattgagtggtggtggaagtgtccctgctcc 257
>dbj|AK066300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013060A09, full insert sequence Length = 2670 Score = 46.1 bits (23), Expect = 0.098 Identities = 41/47 (87%) Strand = Plus / Plus Query: 396 tacttcataggtagcgtactgagtggtggaggcagtgtgccttctcc 442 |||||||||||||| ||| |||||||||| || ||||| ||| |||| Sbjct: 544 tacttcataggtagtgtattgagtggtggtggaagtgtccctgctcc 590
>gb|BT013550.1| Lycopersicon esculentum clone 132277F, mRNA sequence Length = 2049 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 339 ataggccagatgacccagattgagag 364 ||||| |||||||||||||||||||| Sbjct: 215 ataggtcagatgacccagattgagag 240 Score = 42.1 bits (21), Expect = 1.5 Identities = 33/37 (89%) Strand = Plus / Plus Query: 396 tacttcataggtagcgtactgagtggtggaggcagtg 432 |||||||| || || ||||||||||||||||| |||| Sbjct: 272 tacttcattgggagtgtactgagtggtggaggaagtg 308
>ref|XM_773574.1| Giardia lamblia ATCC 50803 hypothetical protein (dnaJ) partial mRNA Length = 1230 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 259 atctcaagtacaaggatccgaa 280 |||||||||||||||||||||| Sbjct: 1100 atctcaagtacaaggatccgaa 1121
>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence Length = 138416 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 233 cttggtggcgttgggaagcgcg 254 |||||||||||||||||||||| Sbjct: 8176 cttggtggcgttgggaagcgcg 8155
>gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, complete sequence Length = 160348 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 233 cttggtggcgttgggaagcgcg 254 |||||||||||||||||||||| Sbjct: 58905 cttggtggcgttgggaagcgcg 58926
>gb|AF128225.1|AF128225 Giardia intestinalis DnaJ homolog gene, complete cds Length = 1263 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 259 atctcaagtacaaggatccgaa 280 |||||||||||||||||||||| Sbjct: 1100 atctcaagtacaaggatccgaa 1121
>ref|XM_469757.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2192 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 318 cggatgactctcgctgaaaagataggccagatgacccagat 358 |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 286 cggatgacgctcgcggagaagatcggccagatgacgcagat 326
>dbj|AK073110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023H22, full insert sequence Length = 2424 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 318 cggatgactctcgctgaaaagataggccagatgacccagat 358 |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 499 cggatgacgctcgcggagaagatcggccagatgacgcagat 539
>gb|CP000358.1| Deinococcus geothermalis DSM 11300 plasmid 1, complete sequence Length = 574126 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 182 tgccaagatggggagcttccacaagacc 209 ||||||||||| ||||||| |||||||| Sbjct: 107580 tgccaagatggagagcttctacaagacc 107553
>gb|AC110883.12| Mus musculus chromosome 8, clone RP23-200N24, complete sequence Length = 293104 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acctttgttctcctcatgtt 229 |||||||||||||||||||| Sbjct: 172503 acctttgttctcctcatgtt 172522
>gb|AC121836.2| Mus musculus BAC clone RP24-73L11 from 8, complete sequence Length = 195192 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 acctttgttctcctcatgtt 229 |||||||||||||||||||| Sbjct: 74590 acctttgttctcctcatgtt 74609
>emb|AL645949.16| Human DNA sequence from clone RP11-357G3 on chromosome 4, complete sequence Length = 145151 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ccttcccaggcaaggcagca 28 |||||||||||||||||||| Sbjct: 120506 ccttcccaggcaaggcagca 120487
>gb|AC119420.12| Mus musculus strain 129S6/SvEvTac clone rp22-121i21 map 11, complete sequence Length = 168186 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 acttctccttcccaggcaag 22 |||||||||||||||||||| Sbjct: 158359 acttctccttcccaggcaag 158378
>emb|AL606482.14| Mouse DNA sequence from clone RP23-360H16 on chromosome 11 Contains the genes for olfactory receptors MOR135-7, -8, -10 and -28, three olfactory receptor MOR135 pseudogenes, and the gene for olfactory receptor MOR157-1, complete sequence Length = 199115 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 acttctccttcccaggcaag 22 |||||||||||||||||||| Sbjct: 144630 acttctccttcccaggcaag 144611
>emb|BX322538.9| Zebrafish DNA sequence from clone CH211-245G11 in linkage group 15, complete sequence Length = 159879 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 ccacaagaccacctttgttc 219 |||||||||||||||||||| Sbjct: 87632 ccacaagaccacctttgttc 87613
>dbj|AB103230.1| Ketupa blakistoni DNA, centromere repeat region, clone: KBL-EcoRI_M22 Length = 366 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 225 acacttctccttcccaggca 206 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 45 acacttctccttcccaggca 26
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gagggagaatgccacggcag 381 |||||||||||||||||||| Sbjct: 659588 gagggagaatgccacggcag 659607
>emb|BX569780.6| Zebrafish DNA sequence from clone CH211-134A17 in linkage group 10, complete sequence Length = 187807 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ctcatgttctgcttggtggc 241 |||||||||||||||||||| Sbjct: 31199 ctcatgttctgcttggtggc 31218
>dbj|AB103285.1| Pulsatrix perspicillata DNA, centromere repeat region, clone: PPE-HaeIII_14 Length = 187 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 148 acacttctccttcccaggca 129
>dbj|AB103284.1| Pulsatrix perspicillata DNA, centromere repeat region, clone: PPE-HaeIII_9 Length = 183 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 148 acacttctccttcccaggca 129
>dbj|AB103283.1| Pulsatrix perspicillata DNA, centromere repeat region, clone: PPE-HaeIII_2 Length = 183 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 148 acacttctccttcccaggca 129
>dbj|AB103252.1| Ketupa blakistoni DNA, centromere repeat region, clone: KBL-EcoRI_S24 Length = 180 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 45 acacttctccttcccaggca 26
>dbj|AB103251.1| Ketupa blakistoni DNA, centromere repeat region, clone: KBL-EcoRI_S18 Length = 186 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 45 acacttctccttcccaggca 26
>dbj|AB103240.1| Ketupa blakistoni DNA, centromere repeat region, clone: KBL-EcoRI_S1 Length = 186 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacttctccttcccaggca 20 |||||||||||||||||||| Sbjct: 45 acacttctccttcccaggca 26
>gb|AY112489.1| Zea mays CL31817_1 mRNA sequence Length = 600 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 aggccatgtccaagtacttc 401 |||||||||||||||||||| Sbjct: 310 aggccatgtccaagtacttc 291
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 gattatctcaagtacaagga 274 |||||||||||||||||||| Sbjct: 1764040 gattatctcaagtacaagga 1764059
>emb|Z54246.1|HSL219B8 Human DNA sequence from clone LA04NC01-219B8 on chromosome 4, complete sequence Length = 36171 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 ccttcccaggcaaggcagca 28 |||||||||||||||||||| Sbjct: 2304 ccttcccaggcaaggcagca 2285
>gb|AC112493.2| Homo sapiens X BAC RP11-2M5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164480 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 ctgaaaagataggccagatg 350 |||||||||||||||||||| Sbjct: 79185 ctgaaaagataggccagatg 79166 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,460,259 Number of Sequences: 3902068 Number of extensions: 3460259 Number of successful extensions: 59490 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59358 Number of HSP's gapped (non-prelim): 117 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
