ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet93d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
2dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 50 0.005
4emb|AL160278.24| Human DNA sequence from clone RP11-574G7 on chr... 42 1.3
5gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.3
6gb|U43083.1|HSU43083 Human G alpha-q (Gaq) mRNA, complete cds 42 1.3
7ref|XM_525528.1| PREDICTED: Pan troglodytes similar to positive ... 40 5.3
8gb|U80745.1|HSU80745 Homo sapiens CTG7a mRNA, partial cds 40 5.3
9gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 5.3
10ref|XR_003386.1| PREDICTED: Mus musculus similar to sterile alph... 40 5.3
11ref|XM_985521.1| PREDICTED: Mus musculus similar to sterile alph... 40 5.3
12gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosom... 40 5.3
13ref|NM_015889.3| Homo sapiens PC2 (positive cofactor 2, multipro... 40 5.3
14ref|NM_001003891.1| Homo sapiens PC2 (positive cofactor 2, multi... 40 5.3
15emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 40 5.3
16gb|BC013985.2| Homo sapiens PC2 (positive cofactor 2, multiprote... 40 5.3
17gb|BC003078.1| Homo sapiens PC2 (positive cofactor 2, multiprote... 40 5.3
18gb|BC017110.1| Homo sapiens PC2 (positive cofactor 2, multiprote... 40 5.3
19emb|CR860021.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0325 (from cl... 40 5.3
20dbj|AK126208.1| Homo sapiens cDNA FLJ44220 fis, clone THYMU30048... 40 5.3
21emb|CR611888.1| full-length cDNA clone CS0DI081YK14 of Placenta ... 40 5.3
22gb|AC128639.13| Papio anubis clone rp41-2d18, complete sequence 40 5.3
23gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand ... 40 5.3
24gb|AF328769.1|AF328769 Homo sapiens PC2-glutamine-rich-associate... 40 5.3
25gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 I... 40 5.3
26gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 i... 40 5.3
27gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11... 40 5.3
28dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
30gb|AF056191.1|AF056191 Homo sapiens TPA inducible protein mRNA, ... 40 5.3
31dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
32dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
33emb|AJ514427.1|ECA514427 Equus caballus mRNA for aquaporin 5 (aq... 40 5.3
34dbj|AK109969.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
35dbj|AK108999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
36emb|CR456537.1| Homo sapiens PCQAP full length open reading fram... 40 5.3
37gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromos... 40 5.3
38gb|AY610211.1| Sus scrofa clone Clu_9762.scr.msk.p1.Contig1, mRN... 40 5.3
39gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome... 40 5.3
40dbj|AK090465.1| Homo sapiens mRNA for FLJ00386 protein 40 5.3

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 39       aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 98
                |||||||||||||||||||| ||||||||  |||| ||| ||||  | |||| |||||||
Sbjct: 26355420 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 26355479

                                                     
Query: 99       caccgatgcagccgccgccaacacccaacgcgccgcc 135
                |||||| |||| |||||||  | ||||||||||||||
Sbjct: 26355480 caccgacgcagtcgccgccggctcccaacgcgccgcc 26355516



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 339      cgccggccacccctncacctgctcccaccaccccgcctccggc 381
                ||||| |||||||| | || ||||||||||| |||||||||||
Sbjct: 26355576 cgccgaccacccctcctccggctcccaccacgccgcctccggc 26355618



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 312      ccacccctcctccggctcccac 333
                ||||||||||||||||||||||
Sbjct: 26355582 ccacccctcctccggctcccac 26355603



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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 39    aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 98
             |||||||||||||||||||| ||||||||  |||| ||| ||||  | |||| |||||||
Sbjct: 87772 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 87831

                                                  
Query: 99    caccgatgcagccgccgccaacacccaacgcgccgcc 135
             |||||| |||| |||||||  | ||||||||||||||
Sbjct: 87832 caccgacgcagtcgccgccggctcccaacgcgccgcc 87868



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                        
Query: 339   cgccggccacccctncacctgctcccaccaccccgcctccggc 381
             ||||| |||||||| | || ||||||||||| |||||||||||
Sbjct: 87928 cgccgaccacccctcctccggctcccaccacgccgcctccggc 87970



 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 312   ccacccctcctccggctcccac 333
             ||||||||||||||||||||||
Sbjct: 87934 ccacccctcctccggctcccac 87955



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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 39    aaatggcgctcctcccgctgctcctcgcg 67
             |||||||||||||||||||| ||||||||
Sbjct: 78564 aaatggcgctcctcccgctggtcctcgcg 78592



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>emb|AL160278.24| Human DNA sequence from clone RP11-574G7 on chromosome 9 Contains the 5'
              end of the GNAQ gene for guanine nucleotide binding protein
              (G protein) q polypeptide and a CpG island, complete
              sequence
          Length = 215399

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 191    gctcccaccgcgcccccggcc 211
              |||||||||||||||||||||
Sbjct: 167503 gctcccaccgcgcccccggcc 167483



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 292    tccggcgccgcaggctcccgc 312
              |||||||||||||||||||||
Sbjct: 288275 tccggcgccgcaggctcccgc 288255



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>gb|U43083.1|HSU43083 Human G alpha-q (Gaq) mRNA, complete cds
          Length = 1700

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 191 gctcccaccgcgcccccggcc 211
           |||||||||||||||||||||
Sbjct: 19  gctcccaccgcgcccccggcc 39



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>ref|XM_525528.1| PREDICTED: Pan troglodytes similar to positive cofactor 2,
            glutamine/Q-rich-associated protein isoform b;
            PC2-glutamine-rich-associated protein; TPA inducible
            gene-1; trinucleotide repeat containing 7; TPA inducible
            protein; activator-recruited cofactor, 105-kD; CTG repeat
            p... (LOC470144), mRNA
          Length = 4350

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcagcagccaccgatgcagc 110
            ||||||||||||||||||||
Sbjct: 2202 tcagcagccaccgatgcagc 2221



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>gb|U80745.1|HSU80745 Homo sapiens CTG7a mRNA, partial cds
          Length = 1048

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 258 tcagcagccaccgatgcagc 277



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 369     ccccgcctccggctcccccg 388
               ||||||||||||||||||||
Sbjct: 2462174 ccccgcctccggctcccccg 2462193



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>ref|XR_003386.1| PREDICTED: Mus musculus similar to sterile alpha motif domain
           containing 1 (LOC671345), mRNA
          Length = 1720

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 182 ccgcctccagctcccaccgcgcccccggccgc 213
           ||||| ||||| ||| ||||||||||||||||
Sbjct: 154 ccgccaccagcgcccgccgcgcccccggccgc 185



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>ref|XM_985521.1| PREDICTED: Mus musculus similar to sterile alpha motif domain
           containing 1 (LOC666704), mRNA
          Length = 2071

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 182 ccgcctccagctcccaccgcgcccccggccgc 213
           ||||| ||||| ||| ||||||||||||||||
Sbjct: 505 ccgccaccagcgcccgccgcgcccccggccgc 536



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>gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosome 5, complete sequence
          Length = 170182

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   cctcctccggctcccacaag 336
             ||||||||||||||||||||
Sbjct: 33991 cctcctccggctcccacaag 33972



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>ref|NM_015889.3| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein (PCQAP), transcript
           variant 2, mRNA
          Length = 3264

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 890 tcagcagccaccgatgcagc 909



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>ref|NM_001003891.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein (PCQAP), transcript
           variant 1, mRNA
          Length = 3384

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 890 tcagcagccaccgatgcagc 909



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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
              complete sequence
          Length = 145670

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     ctcctcccgctgctcctcgc 66
              ||||||||||||||||||||
Sbjct: 106847 ctcctcccgctgctcctcgc 106828



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>gb|BC013985.2| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein, transcript variant
           2, mRNA (cDNA clone MGC:20267 IMAGE:3506327), complete
           cds
          Length = 3227

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 850 tcagcagccaccgatgcagc 869



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>gb|BC003078.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein, mRNA (cDNA clone
           IMAGE:3504608), partial cds
          Length = 3240

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 868 tcagcagccaccgatgcagc 887



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>gb|BC017110.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex)
           glutamine/Q-rich-associated protein, mRNA (cDNA clone
           IMAGE:3604453)
          Length = 3067

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 575 tcagcagccaccgatgcagc 594



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>emb|CR860021.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0325 (from clone DKFZp459O0325)
          Length = 3256

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 887 tcagcagccaccgatgcagc 906



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>dbj|AK126208.1| Homo sapiens cDNA FLJ44220 fis, clone THYMU3004866, moderately
            similar to Homo sapiens PC2 (positive cofactor 2,
            multiprotein complex) glutamine/Q-rich-associated protein
            (PCQAP)
          Length = 3622

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 91   tcagcagccaccgatgcagc 110
            ||||||||||||||||||||
Sbjct: 1272 tcagcagccaccgatgcagc 1291



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>emb|CR611888.1| full-length cDNA clone CS0DI081YK14 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 2700

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 362 tcagcagccaccgatgcagc 381



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>gb|AC128639.13| Papio anubis clone rp41-2d18, complete sequence
          Length = 173331

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    tcagcagccaccgatgcagc 110
             ||||||||||||||||||||
Sbjct: 62736 tcagcagccaccgatgcagc 62717



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>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine
             K203, and chemokine ah294 genes, complete cds
          Length = 112034

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 49    cctcccgctgctcctcgcggccct 72
             |||||||||||||||||| |||||
Sbjct: 61861 cctcccgctgctcctcgcagccct 61838



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>gb|AF328769.1|AF328769 Homo sapiens PC2-glutamine-rich-associated protein (PCQAP) mRNA,
           complete cds
          Length = 3170

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 804 tcagcagccaccgatgcagc 823



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>gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region,
              complete sequence
          Length = 145356

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 91     tcagcagccaccgatgcagc 110
              ||||||||||||||||||||
Sbjct: 103902 tcagcagccaccgatgcagc 103921



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>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete
              sequence
          Length = 193159

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     gcgctcctcccgctgctcct 63
              ||||||||||||||||||||
Sbjct: 104289 gcgctcctcccgctgctcct 104270



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>gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11, complete sequence
          Length = 163908

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tcagcagccaccgatgcagc 110
             ||||||||||||||||||||
Sbjct: 14680 tcagcagccaccgatgcagc 14699



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 47       ctcctcccgctgctcctcgc 66
                ||||||||||||||||||||
Sbjct: 19325015 ctcctcccgctgctcctcgc 19324996



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 358      tgctcccaccaccccgcctc 377
                ||||||||||||||||||||
Sbjct: 16438298 tgctcccaccaccccgcctc 16438317



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>gb|AF056191.1|AF056191 Homo sapiens TPA inducible protein mRNA, complete cds
          Length = 3334

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 896 tcagcagccaccgatgcagc 915



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>dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0404G03
          Length = 135225

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   tgctcccaccaccccgcctc 377
             ||||||||||||||||||||
Sbjct: 47616 tgctcccaccaccccgcctc 47635



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>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0008F02
          Length = 139655

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    tgctcccaccaccccgcctc 377
              ||||||||||||||||||||
Sbjct: 114861 tgctcccaccaccccgcctc 114880



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>emb|AJ514427.1|ECA514427 Equus caballus mRNA for aquaporin 5 (aqp5 gene)
          Length = 727

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  cgctcctcccgctgctcctc 64
           ||||||||||||||||||||
Sbjct: 219 cgctcctcccgctgctcctc 200



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>dbj|AK109969.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-C04, full
           insert sequence
          Length = 3464

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 167 cctccggccggcaacccgcc 186
           ||||||||||||||||||||
Sbjct: 881 cctccggccggcaacccgcc 900



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>dbj|AK108999.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-G09, full
           insert sequence
          Length = 1206

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 191 gctcccaccgcgcccccggccgcc 214
           ||||| ||||||||||||||||||
Sbjct: 324 gctccgaccgcgcccccggccgcc 347



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>emb|CR456537.1| Homo sapiens PCQAP full length open reading frame (ORF) cDNA clone
           (cDNA clone C22ORF:pGEM.PCQAP.V2)
          Length = 2226

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 626 tcagcagccaccgatgcagc 645



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>gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromosome ul, complete
              sequence
          Length = 225652

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 345    ccacccctncacctgctcccacc 367
              |||||||| ||||||||||||||
Sbjct: 102661 ccacccctccacctgctcccacc 102639



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>gb|AY610211.1| Sus scrofa clone Clu_9762.scr.msk.p1.Contig1, mRNA sequence
          Length = 2291

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 45   cgctcctcccgctgctcctc 64
            ||||||||||||||||||||
Sbjct: 2038 cgctcctcccgctgctcctc 2057



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>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence
          Length = 212724

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 182    ccgcctccagctcccaccgcgcccccggccgc 213
              ||||| ||||| ||| ||||||||||||||||
Sbjct: 164887 ccgccaccagcgcccgccgcgcccccggccgc 164918



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>dbj|AK090465.1| Homo sapiens mRNA for FLJ00386 protein
          Length = 3349

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 91  tcagcagccaccgatgcagc 110
           ||||||||||||||||||||
Sbjct: 879 tcagcagccaccgatgcagc 898


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,674,115
Number of Sequences: 3902068
Number of extensions: 2674115
Number of successful extensions: 64759
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64462
Number of HSP's gapped (non-prelim): 297
length of query: 393
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 371
effective length of database: 17,147,199,772
effective search space: 6361611115412
effective search space used: 6361611115412
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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