| Clone Name | baet93d05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 39 aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 98 |||||||||||||||||||| |||||||| |||| ||| |||| | |||| ||||||| Sbjct: 26355420 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 26355479 Query: 99 caccgatgcagccgccgccaacacccaacgcgccgcc 135 |||||| |||| ||||||| | |||||||||||||| Sbjct: 26355480 caccgacgcagtcgccgccggctcccaacgcgccgcc 26355516 Score = 48.1 bits (24), Expect = 0.022 Identities = 38/43 (88%) Strand = Plus / Plus Query: 339 cgccggccacccctncacctgctcccaccaccccgcctccggc 381 ||||| |||||||| | || ||||||||||| ||||||||||| Sbjct: 26355576 cgccgaccacccctcctccggctcccaccacgccgcctccggc 26355618 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 312 ccacccctcctccggctcccac 333 |||||||||||||||||||||| Sbjct: 26355582 ccacccctcctccggctcccac 26355603
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:P0491E01 Length = 136150 Score = 81.8 bits (41), Expect = 2e-12 Identities = 83/97 (85%) Strand = Plus / Plus Query: 39 aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 98 |||||||||||||||||||| |||||||| |||| ||| |||| | |||| ||||||| Sbjct: 87772 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 87831 Query: 99 caccgatgcagccgccgccaacacccaacgcgccgcc 135 |||||| |||| ||||||| | |||||||||||||| Sbjct: 87832 caccgacgcagtcgccgccggctcccaacgcgccgcc 87868 Score = 48.1 bits (24), Expect = 0.022 Identities = 38/43 (88%) Strand = Plus / Plus Query: 339 cgccggccacccctncacctgctcccaccaccccgcctccggc 381 ||||| |||||||| | || ||||||||||| ||||||||||| Sbjct: 87928 cgccgaccacccctcctccggctcccaccacgccgcctccggc 87970 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Plus Query: 312 ccacccctcctccggctcccac 333 |||||||||||||||||||||| Sbjct: 87934 ccacccctcctccggctcccac 87955
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Plus Query: 39 aaatggcgctcctcccgctgctcctcgcg 67 |||||||||||||||||||| |||||||| Sbjct: 78564 aaatggcgctcctcccgctggtcctcgcg 78592
>emb|AL160278.24| Human DNA sequence from clone RP11-574G7 on chromosome 9 Contains the 5' end of the GNAQ gene for guanine nucleotide binding protein (G protein) q polypeptide and a CpG island, complete sequence Length = 215399 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 191 gctcccaccgcgcccccggcc 211 ||||||||||||||||||||| Sbjct: 167503 gctcccaccgcgcccccggcc 167483
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 tccggcgccgcaggctcccgc 312 ||||||||||||||||||||| Sbjct: 288275 tccggcgccgcaggctcccgc 288255
>gb|U43083.1|HSU43083 Human G alpha-q (Gaq) mRNA, complete cds Length = 1700 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 gctcccaccgcgcccccggcc 211 ||||||||||||||||||||| Sbjct: 19 gctcccaccgcgcccccggcc 39
>ref|XM_525528.1| PREDICTED: Pan troglodytes similar to positive cofactor 2, glutamine/Q-rich-associated protein isoform b; PC2-glutamine-rich-associated protein; TPA inducible gene-1; trinucleotide repeat containing 7; TPA inducible protein; activator-recruited cofactor, 105-kD; CTG repeat p... (LOC470144), mRNA Length = 4350 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 2202 tcagcagccaccgatgcagc 2221
>gb|U80745.1|HSU80745 Homo sapiens CTG7a mRNA, partial cds Length = 1048 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 258 tcagcagccaccgatgcagc 277
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 ccccgcctccggctcccccg 388 |||||||||||||||||||| Sbjct: 2462174 ccccgcctccggctcccccg 2462193
>ref|XR_003386.1| PREDICTED: Mus musculus similar to sterile alpha motif domain containing 1 (LOC671345), mRNA Length = 1720 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 182 ccgcctccagctcccaccgcgcccccggccgc 213 ||||| ||||| ||| |||||||||||||||| Sbjct: 154 ccgccaccagcgcccgccgcgcccccggccgc 185
>ref|XM_985521.1| PREDICTED: Mus musculus similar to sterile alpha motif domain containing 1 (LOC666704), mRNA Length = 2071 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 182 ccgcctccagctcccaccgcgcccccggccgc 213 ||||| ||||| ||| |||||||||||||||| Sbjct: 505 ccgccaccagcgcccgccgcgcccccggccgc 536
>gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosome 5, complete sequence Length = 170182 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 cctcctccggctcccacaag 336 |||||||||||||||||||| Sbjct: 33991 cctcctccggctcccacaag 33972
>ref|NM_015889.3| Homo sapiens PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein (PCQAP), transcript variant 2, mRNA Length = 3264 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 890 tcagcagccaccgatgcagc 909
>ref|NM_001003891.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein (PCQAP), transcript variant 1, mRNA Length = 3384 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 890 tcagcagccaccgatgcagc 909
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctcctcccgctgctcctcgc 66 |||||||||||||||||||| Sbjct: 106847 ctcctcccgctgctcctcgc 106828
>gb|BC013985.2| Homo sapiens PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein, transcript variant 2, mRNA (cDNA clone MGC:20267 IMAGE:3506327), complete cds Length = 3227 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 850 tcagcagccaccgatgcagc 869
>gb|BC003078.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein, mRNA (cDNA clone IMAGE:3504608), partial cds Length = 3240 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 868 tcagcagccaccgatgcagc 887
>gb|BC017110.1| Homo sapiens PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein, mRNA (cDNA clone IMAGE:3604453) Length = 3067 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 575 tcagcagccaccgatgcagc 594
>emb|CR860021.1| Pongo pygmaeus mRNA; cDNA DKFZp459O0325 (from clone DKFZp459O0325) Length = 3256 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 887 tcagcagccaccgatgcagc 906
>dbj|AK126208.1| Homo sapiens cDNA FLJ44220 fis, clone THYMU3004866, moderately similar to Homo sapiens PC2 (positive cofactor 2, multiprotein complex) glutamine/Q-rich-associated protein (PCQAP) Length = 3622 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 1272 tcagcagccaccgatgcagc 1291
>emb|CR611888.1| full-length cDNA clone CS0DI081YK14 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2700 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 362 tcagcagccaccgatgcagc 381
>gb|AC128639.13| Papio anubis clone rp41-2d18, complete sequence Length = 173331 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 62736 tcagcagccaccgatgcagc 62717
>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine K203, and chemokine ah294 genes, complete cds Length = 112034 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 cctcccgctgctcctcgcggccct 72 |||||||||||||||||| ||||| Sbjct: 61861 cctcccgctgctcctcgcagccct 61838
>gb|AF328769.1|AF328769 Homo sapiens PC2-glutamine-rich-associated protein (PCQAP) mRNA, complete cds Length = 3170 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 804 tcagcagccaccgatgcagc 823
>gb|AC004033.3| Homo sapiens Chromosome 22q11.2 PAC Clone p_m11 In BCRL2-GGT Region, complete sequence Length = 145356 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 103902 tcagcagccaccgatgcagc 103921
>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete sequence Length = 193159 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 gcgctcctcccgctgctcct 63 |||||||||||||||||||| Sbjct: 104289 gcgctcctcccgctgctcct 104270
>gb|AC007050.25| Homo sapiens chromosome 22 clone bac32 map 22q11, complete sequence Length = 163908 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 14680 tcagcagccaccgatgcagc 14699
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctcctcccgctgctcctcgc 66 |||||||||||||||||||| Sbjct: 19325015 ctcctcccgctgctcctcgc 19324996
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 tgctcccaccaccccgcctc 377 |||||||||||||||||||| Sbjct: 16438298 tgctcccaccaccccgcctc 16438317
>gb|AF056191.1|AF056191 Homo sapiens TPA inducible protein mRNA, complete cds Length = 3334 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 896 tcagcagccaccgatgcagc 915
>dbj|AP005656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0404G03 Length = 135225 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 tgctcccaccaccccgcctc 377 |||||||||||||||||||| Sbjct: 47616 tgctcccaccaccccgcctc 47635
>dbj|AP003518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0008F02 Length = 139655 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 358 tgctcccaccaccccgcctc 377 |||||||||||||||||||| Sbjct: 114861 tgctcccaccaccccgcctc 114880
>emb|AJ514427.1|ECA514427 Equus caballus mRNA for aquaporin 5 (aqp5 gene) Length = 727 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cgctcctcccgctgctcctc 64 |||||||||||||||||||| Sbjct: 219 cgctcctcccgctgctcctc 200
>dbj|AK109969.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-C04, full insert sequence Length = 3464 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 cctccggccggcaacccgcc 186 |||||||||||||||||||| Sbjct: 881 cctccggccggcaacccgcc 900
>dbj|AK108999.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-G09, full insert sequence Length = 1206 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 191 gctcccaccgcgcccccggccgcc 214 ||||| |||||||||||||||||| Sbjct: 324 gctccgaccgcgcccccggccgcc 347
>emb|CR456537.1| Homo sapiens PCQAP full length open reading frame (ORF) cDNA clone (cDNA clone C22ORF:pGEM.PCQAP.V2) Length = 2226 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 626 tcagcagccaccgatgcagc 645
>gb|AC169087.3| Gallus gallus BAC clone CH261-119D18 from chromosome ul, complete sequence Length = 225652 Score = 40.1 bits (20), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 345 ccacccctncacctgctcccacc 367 |||||||| |||||||||||||| Sbjct: 102661 ccacccctccacctgctcccacc 102639
>gb|AY610211.1| Sus scrofa clone Clu_9762.scr.msk.p1.Contig1, mRNA sequence Length = 2291 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cgctcctcccgctgctcctc 64 |||||||||||||||||||| Sbjct: 2038 cgctcctcccgctgctcctc 2057
>gb|AC156028.2| Mus musculus BAC clone RP23-61A11 from chromosome 8, complete sequence Length = 212724 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Plus Query: 182 ccgcctccagctcccaccgcgcccccggccgc 213 ||||| ||||| ||| |||||||||||||||| Sbjct: 164887 ccgccaccagcgcccgccgcgcccccggccgc 164918
>dbj|AK090465.1| Homo sapiens mRNA for FLJ00386 protein Length = 3349 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tcagcagccaccgatgcagc 110 |||||||||||||||||||| Sbjct: 879 tcagcagccaccgatgcagc 898 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,674,115 Number of Sequences: 3902068 Number of extensions: 2674115 Number of successful extensions: 64759 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64462 Number of HSP's gapped (non-prelim): 297 length of query: 393 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 371 effective length of database: 17,147,199,772 effective search space: 6361611115412 effective search space used: 6361611115412 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)