ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet93c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip ... 42 4e-04
2CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chiti... 42 6e-04
3ILVC_TREPR (Q8KTR6) Ketol-acid reductoisomerase (EC 1.1.1.86) (A... 30 2.3
4RL3_GEOSL (P60454) 50S ribosomal protein L3 28 8.6
5RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC ... 28 8.6

>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb|
           chitinase-1) (TBC-1)
          Length = 314

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +3

Query: 108 IAMTNGYLFREYIGAQFTGVRFSDVPVNTGV 200
           + +T+  +FREYIG+QF  V+FSDVP+N  V
Sbjct: 21  LPLTSALVFREYIGSQFNDVKFSDVPINPDV 51



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>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)|
          Length = 275

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = +3

Query: 129 LFREYIGAQFTGVRFSDVPVNTGV 200
           LFREYIGAQF  V+FSDVP+N  V
Sbjct: 2   LFREYIGAQFNDVKFSDVPINPNV 25



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>ILVC_TREPR (Q8KTR6) Ketol-acid reductoisomerase (EC 1.1.1.86)|
           (Acetohydroxy-acid isomeroreductase)
           (Alpha-keto-beta-hydroxylacil reductoisomerase)
          Length = 328

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 12/35 (34%), Positives = 23/35 (65%)
 Frame = +3

Query: 33  RSHCIYQQQSGVPLILTPRPAPARSIAMTNGYLFR 137
           R+H +  + SGV +++  RP P+   AM++G++ R
Sbjct: 29  RAHAMNLRDSGVEVVIGLRPGPSFDAAMSDGFMPR 63



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>RL3_GEOSL (P60454) 50S ribosomal protein L3|
          Length = 210

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 14  QQARLITEPL--HISAAEWGAFDPHTEASSSSIDRHD 118
           Q+AR +T+P+  HI AA  GAF    E     +DR++
Sbjct: 56  QEARKVTKPMLGHIKAAGQGAFAHIREFRLDDVDRYN 92



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>RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1404

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +3

Query: 30  LRSHCIYQQQSGVPLILTPRPAPARSIAMTNGYLFREYIGAQFTGVRFSDV 182
           L ++ +    +G P+I+     P++ I +   Y+ R+ IGAQ  G+ FSD+
Sbjct: 485 LSTNNVLSPANGDPIIV-----PSQDIVLGLYYMTRKKIGAQGEGMVFSDI 530


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,764,968
Number of Sequences: 219361
Number of extensions: 460171
Number of successful extensions: 1453
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 80,573,946
effective HSP length: 43
effective length of database: 71,141,423
effective search space used: 1707394152
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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