>YOJB_BACSU (O31861) Hypothetical protein yojB|
          Length = 78

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 6   GPPGRPKEPPSFFISSFPGGREGGFLGKRM 95
           GP G P   P  F +   GG  GGFLG  +
Sbjct: 13  GPAGYPARSPFLFGAPLVGGLLGGFLGSAL 42

>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor|
          Length = 680

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -2

Query: 85  PKNPPSL-PPGKEEMKKEGGSFGLPGGP 5
           P  PP    PG   +K E G  GLPGGP
Sbjct: 292 PPGPPGFGKPGLPGLKGERGPAGLPGGP 319

>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype|
           1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1)
          Length = 1004

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 3   RGPPGRPKEPPSFFISSFPGGREGG 77
           R PPG+P EP +   S  PG RE G
Sbjct: 621 RAPPGQPAEPDAPRSSPGPGAREEG 645

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 85  PKNPPSLPPGKEEMKKEGGSFGLPG--GPR 2
           P  PP  P G+   K EGGS GLPG  GPR
Sbjct: 765 PIGPPG-PAGQPGDKGEGGSPGLPGIAGPR 793

>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 85  PKNPPSLPPGKEEMKKEGGSFGLPGGP 5
           P+ PP  P GK+ +  E G  GLPG P
Sbjct: 32  PRGPPG-PSGKDGIDGEPGPSGLPGPP 57

>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor|
          Length = 1669

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
 Frame = -2

Query: 85   PKNPPSL-----PPGKEEMKKEGGSFGLPGGP 5
            P+ PP L     PPG +  +   GS GLPG P
Sbjct: 1364 PEGPPGLKGLQGPPGPKGQQGVTGSVGLPGPP 1395


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,698,064
Number of Sequences: 219361
Number of extensions: 335425
Number of successful extensions: 2371
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2367
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)