ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet93b09 |
|---|---|
| Clone Library Name | barley_pub |
>COAA1_HUMAN (Q03692) Collagen alpha-1(X) chain precursor| Length = 680 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P P P+G GVG P PG PAG Sbjct: 403 PGLPGPKGDPGVGGPPGLPGPVGPAG 428
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G G HP + G+ PAG Sbjct: 146 PGAPGPQGPNGQPGHPGQGGSQGPAG 171
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G +G P PGA+ P G Sbjct: 182 PGAPGPQGFQGPPGEPGEPGASGPMG 207
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G +G P PGA+ P G Sbjct: 193 PGAPGPQGFQGPPGEPGEPGASGPMG 218
>CO1A1_CANFA (Q9XSJ7) Collagen alpha-1(I) chain precursor| Length = 1460 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G +G P PGA+ P G Sbjct: 189 PGAPGPQGFQGPPGEPGEPGASGPMG 214
>CO1A1_BOVIN (P02453) Collagen alpha-1(I) chain (Fragments)| Length = 779 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G +G P PGA+ P G Sbjct: 31 PGAPGPQGFQGPPGEPGEPGASGPMG 56
>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)| Length = 623 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +2 Query: 302 VPAAPAPRGRRGVGAHPCRPGAARPAG 382 VP AP P G +G RPGA P G Sbjct: 355 VPGAPGPPGHKGDTGEAGRPGAPGPPG 381
>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:| Chondrocalcin] Length = 1459 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +2 Query: 311 APAPRGRRGVGAHPCRPGAARPAG 382 AP PRGR G P PG A P G Sbjct: 116 APGPRGRDGEPGTPGNPGPAGPPG 139
>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2| Length = 1033 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%) Frame = +2 Query: 311 APAPRGRRGVGAHP--CRPGAARPAG 382 APAP G + GA P +PG ARP+G Sbjct: 158 APAPSGPKPGGARPGAPKPGGARPSG 183
>SCRR_SALTY (P37077) Sucrose operon repressor (Scr operon regulatory protein)| Length = 334 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = +2 Query: 71 SSHARALYNGRSHHHGVLVPAQTS 142 S HAR+L N RSH G++VP T+ Sbjct: 55 SIHARSLRNNRSHTIGLVVPEITN 78
>K6PF_STRA5 (P65697) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 340 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -3 Query: 358 AARMGAHATSPARCGRGGDEVGVAAAESTE 269 A+RMGA+A + GRGG VGV E E Sbjct: 265 ASRMGAYAVQLLKEGRGGLAVGVHNEEMVE 294
>K6PF_STRA3 (P65696) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 340 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = -3 Query: 358 AARMGAHATSPARCGRGGDEVGVAAAESTE 269 A+RMGA+A + GRGG VGV E E Sbjct: 265 ASRMGAYAVQLLKEGRGGLAVGVHNEEMVE 294
>IF2_SALCH (Q57JH9) Translation initiation factor IF-2| Length = 892 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 9/47 (19%) Frame = -3 Query: 379 RGPSGARAARMGAHATSPA---------RCGRGGDEVGVAAAESTEK 266 R AR A+ G HA S A RCG+GG G + + +K Sbjct: 257 RNAKAARPAKKGKHAESKADREEARAAVRCGKGGKRKGSSLQQGFQK 303
>COAA1_BOVIN (P23206) Collagen alpha-1(X) chain precursor| Length = 674 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P P P+G G+ P PG PAG Sbjct: 403 PGLPGPKGDPGIAGSPGLPGPVGPAG 428
>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1470 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = +2 Query: 302 VPAAPAPRGRRGVGAHPCRPGAARPAG 382 VP P P G G P PG A PAG Sbjct: 826 VPGPPGPPGAMGPPGPPGTPGPAGPAG 852
>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor| Length = 1356 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/30 (43%), Positives = 15/30 (50%) Frame = +2 Query: 293 AHLVPAAPAPRGRRGVGAHPCRPGAARPAG 382 AH +P P G RG+ R G A PAG Sbjct: 197 AHGANGSPGPAGSRGLNGERGRAGPAGPAG 226
>SFTPD_RAT (P35248) Pulmonary surfactant-associated protein D precursor (SP-D)| (PSP-D) (CP4) Length = 374 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 314 PAPRGRRGVGAHPCRPGAARPAG 382 P P+G RG+ P PG + PAG Sbjct: 95 PGPKGERGLVGPPGSPGISGPAG 117
>SFTPD_MOUSE (P50404) Pulmonary surfactant-associated protein D precursor (SP-D)| (PSP-D) Length = 374 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 314 PAPRGRRGVGAHPCRPGAARPAG 382 P P+G RG+ P PG PAG Sbjct: 95 PGPKGERGLSGPPGLPGIPGPAG 117
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = +2 Query: 314 PAPRGRRGVGAHPCRPGAARPAG 382 P P G G GA P RPGA RP G Sbjct: 194 PRPGGAVG-GARPPRPGAPRPGG 215
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/23 (60%), Positives = 14/23 (60%) Frame = +2 Query: 314 PAPRGRRGVGAHPCRPGAARPAG 382 P P G G GA P RPGA RP G Sbjct: 194 PRPGGAVG-GARPPRPGAPRPGG 215
>COHA1_HUMAN (Q9UMD9) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) Length = 1497 Score = 27.7 bits (60), Expect = 7.0 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = +2 Query: 302 VPAAPAPRGRRGVGAHPCRPGAARPAG 382 VP P P G G P PG A PAG Sbjct: 819 VPGPPGPPGAMGPPGPPGAPGPAGPAG 845
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G +G P PG + P G Sbjct: 182 PGAPGPQGFQGPPGEPGEPGGSGPMG 207
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G +G P PG + P G Sbjct: 182 PGAPGPQGFQGPPGEPGEPGGSGPMG 207
>CO4A1_MOUSE (P02463) Collagen alpha-1(IV) chain precursor| Length = 1669 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = +2 Query: 302 VPAAPAPRGRRGVGAHPCRPGAARPAG 382 VP P +G GV P +PG+ PAG Sbjct: 871 VPGFPGSKGEMGVMGTPGQPGSPGPAG 897
>DPY2_CAEEL (P35799) Cuticle collagen dpy-2 precursor (Protein dumpy-2)| Length = 360 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/20 (55%), Positives = 12/20 (60%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPG 364 P P P+G RGV HP PG Sbjct: 167 PCLPCPQGPRGVPGHPGFPG 186
>COAA1_MOUSE (Q05306) Collagen alpha-1(X) chain precursor| Length = 680 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/21 (47%), Positives = 12/21 (57%) Frame = +2 Query: 302 VPAAPAPRGRRGVGAHPCRPG 364 +P AP +G RG HP PG Sbjct: 315 LPGAPGAKGERGPAGHPGEPG 335
>COLQ_TORMA (Q03637) Acetylcholinesterase collagenic tail peptide precursor| (AChE Q subunit) Length = 471 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +2 Query: 314 PAPRGRRGVGAHPCRPGAARPAG 382 P RG RG+ PC PG P G Sbjct: 153 PGVRGPRGMPGSPCSPGPIGPRG 175
>CAS4_EPHMU (P18503) Short-chain collagen C4 (Fragment)| Length = 366 Score = 27.3 bits (59), Expect = 9.1 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = +2 Query: 305 PAAPAPRGRRGVGAHPCRPGAARPAG 382 P AP P+G G P PG A P G Sbjct: 42 PGAPGPQGAPGAPGAPGLPGPAGPQG 67 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.126 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 27,977,339 Number of Sequences: 219361 Number of extensions: 292132 Number of successful extensions: 1835 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 1282 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1824 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 1391514312 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
