ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet93a02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 184 bits (93), Expect = 2e-43 Identities = 249/301 (82%) Strand = Plus / Plus Query: 118 ccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgcct 177 ||||||||||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 330122 ccgtgcgcgtcgtgcaagctgctgcggcggcggtgcacgtcggagtgcgtgttcgcgccc 330181 Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 ||||||||| ||||||| | || |||||||||| ||||||||||| |||||||||||| Sbjct: 330182 tacttcccggcggaggaggcgcagcggttcgccatggtgcaccgggtgttcggcgccagc 330241 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||||||| || | || || ||||| || | || ||||| |||||| Sbjct: 330242 aacgtcagcaagatgctgctcgatgtgccgccgccgcagaggcccgacgccgtcagcagc 330301 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 || || |||||||||| || || ||| |||||||||||||||| |||| || ||||||| Sbjct: 330302 ctcgtctacgaggccaacgcccgtatgagggaccccgtctacggctgcgtcgccgccatc 330361 Query: 358 tcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacaggccgag 417 |||| |||||| | || ||||||||||||||| ||||||| ||| |||| || |||||| Sbjct: 330362 tccttcctccagaaccaagtctcccagctccagatgcagctcgccctcgcccacgccgag 330421 Query: 418 a 418 | Sbjct: 330422 a 330422
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 184 bits (93), Expect = 2e-43 Identities = 249/301 (82%) Strand = Plus / Plus Query: 118 ccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgcct 177 ||||||||||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 313724 ccgtgcgcgtcgtgcaagctgctgcggcggcggtgcacgtcggagtgcgtgttcgcgccc 313783 Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 ||||||||| ||||||| | || |||||||||| ||||||||||| |||||||||||| Sbjct: 313784 tacttcccggcggaggaggcgcagcggttcgccatggtgcaccgggtgttcggcgccagc 313843 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||||||| || | || || ||||| || | || ||||| |||||| Sbjct: 313844 aacgtcagcaagatgctgctcgatgtgccgccgccgcagaggcccgacgccgtcagcagc 313903 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 || || |||||||||| || || ||| |||||||||||||||| |||| || ||||||| Sbjct: 313904 ctcgtctacgaggccaacgcccgtatgagggaccccgtctacggctgcgtcgccgccatc 313963 Query: 358 tcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacaggccgag 417 |||| |||||| | || ||||||||||||||| ||||||| ||| |||| || |||||| Sbjct: 313964 tccttcctccagaaccaagtctcccagctccagatgcagctcgccctcgcccacgccgag 314023 Query: 418 a 418 | Sbjct: 314024 a 314024 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tcccttctcttctcttctct 55 |||||||||||||||||||| Sbjct: 18969770 tcccttctcttctcttctct 18969789 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctcta 56 ||||| |||||||||||||||||| Sbjct: 11807448 tcttctcttctcttctcttctcta 11807471
>dbj|AK109211.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-D02, full insert sequence Length = 693 Score = 184 bits (93), Expect = 2e-43 Identities = 249/301 (82%) Strand = Plus / Plus Query: 118 ccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgcct 177 ||||||||||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 100 ccgtgcgcgtcgtgcaagctgctgcggcggcggtgcacgtcggagtgcgtgttcgcgccc 159 Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 ||||||||| ||||||| | || |||||||||| ||||||||||| |||||||||||| Sbjct: 160 tacttcccggcggaggaggcgcagcggttcgccatggtgcaccgggtgttcggcgccagc 219 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||||||| || | || || ||||| || | || ||||| |||||| Sbjct: 220 aacgtcagcaagatgctgctcgatgtgccgccgccgcagaggcccgacgccgtcagcagc 279 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 || || |||||||||| || || ||| |||||||||||||||| |||| || ||||||| Sbjct: 280 ctcgtctacgaggccaacgcccgtatgagggaccccgtctacggctgcgtcgccgccatc 339 Query: 358 tcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacaggccgag 417 |||| |||||| | || ||||||||||||||| ||||||| ||| |||| || |||||| Sbjct: 340 tccttcctccagaaccaagtctcccagctccagatgcagctcgccctcgcccacgccgag 399 Query: 418 a 418 | Sbjct: 400 a 400
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 184 bits (93), Expect = 2e-43 Identities = 249/301 (82%) Strand = Plus / Plus Query: 118 ccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgcct 177 ||||||||||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 313724 ccgtgcgcgtcgtgcaagctgctgcggcggcggtgcacgtcggagtgcgtgttcgcgccc 313783 Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 ||||||||| ||||||| | || |||||||||| ||||||||||| |||||||||||| Sbjct: 313784 tacttcccggcggaggaggcgcagcggttcgccatggtgcaccgggtgttcggcgccagc 313843 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||||||| || | || || ||||| || | || ||||| |||||| Sbjct: 313844 aacgtcagcaagatgctgctcgatgtgccgccgccgcagaggcccgacgccgtcagcagc 313903 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 || || |||||||||| || || ||| |||||||||||||||| |||| || ||||||| Sbjct: 313904 ctcgtctacgaggccaacgcccgtatgagggaccccgtctacggctgcgtcgccgccatc 313963 Query: 358 tcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacaggccgag 417 |||| |||||| | || ||||||||||||||| ||||||| ||| |||| || |||||| Sbjct: 313964 tccttcctccagaaccaagtctcccagctccagatgcagctcgccctcgcccacgccgag 314023 Query: 418 a 418 | Sbjct: 314024 a 314024 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tcccttctcttctcttctct 55 |||||||||||||||||||| Sbjct: 19128419 tcccttctcttctcttctct 19128438 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctcta 56 ||||| |||||||||||||||||| Sbjct: 11885859 tcttctcttctcttctcttctcta 11885882
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 184 bits (93), Expect = 2e-43 Identities = 249/301 (82%) Strand = Plus / Plus Query: 118 ccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgcct 177 ||||||||||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 330122 ccgtgcgcgtcgtgcaagctgctgcggcggcggtgcacgtcggagtgcgtgttcgcgccc 330181 Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 ||||||||| ||||||| | || |||||||||| ||||||||||| |||||||||||| Sbjct: 330182 tacttcccggcggaggaggcgcagcggttcgccatggtgcaccgggtgttcggcgccagc 330241 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||||||| || | || || ||||| || | || ||||| |||||| Sbjct: 330242 aacgtcagcaagatgctgctcgatgtgccgccgccgcagaggcccgacgccgtcagcagc 330301 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 || || |||||||||| || || ||| |||||||||||||||| |||| || ||||||| Sbjct: 330302 ctcgtctacgaggccaacgcccgtatgagggaccccgtctacggctgcgtcgccgccatc 330361 Query: 358 tcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacaggccgag 417 |||| |||||| | || ||||||||||||||| ||||||| ||| |||| || |||||| Sbjct: 330362 tccttcctccagaaccaagtctcccagctccagatgcagctcgccctcgcccacgccgag 330421 Query: 418 a 418 | Sbjct: 330422 a 330422
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 184 bits (93), Expect = 2e-43 Identities = 249/301 (82%) Strand = Plus / Plus Query: 118 ccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgcct 177 ||||||||||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 63173 ccgtgcgcgtcgtgcaagctgctgcggcggcggtgcacgtcggagtgcgtgttcgcgccc 63232 Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 ||||||||| ||||||| | || |||||||||| ||||||||||| |||||||||||| Sbjct: 63233 tacttcccggcggaggaggcgcagcggttcgccatggtgcaccgggtgttcggcgccagc 63292 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||||||| || | || || ||||| || | || ||||| |||||| Sbjct: 63293 aacgtcagcaagatgctgctcgatgtgccgccgccgcagaggcccgacgccgtcagcagc 63352 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 || || |||||||||| || || ||| |||||||||||||||| |||| || ||||||| Sbjct: 63353 ctcgtctacgaggccaacgcccgtatgagggaccccgtctacggctgcgtcgccgccatc 63412 Query: 358 tcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacaggccgag 417 |||| |||||| | || ||||||||||||||| ||||||| ||| |||| || |||||| Sbjct: 63413 tccttcctccagaaccaagtctcccagctccagatgcagctcgccctcgcccacgccgag 63472 Query: 418 a 418 | Sbjct: 63473 a 63473
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 184 bits (93), Expect = 2e-43 Identities = 249/301 (82%) Strand = Plus / Plus Query: 118 ccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgcct 177 ||||||||||| |||||||| |||||||||||||| | ||| |||||||| ||||| Sbjct: 21042 ccgtgcgcgtcgtgcaagctgctgcggcggcggtgcacgtcggagtgcgtgttcgcgccc 21101 Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 ||||||||| ||||||| | || |||||||||| ||||||||||| |||||||||||| Sbjct: 21102 tacttcccggcggaggaggcgcagcggttcgccatggtgcaccgggtgttcggcgccagc 21161 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||||||| || | || || ||||| || | || ||||| |||||| Sbjct: 21162 aacgtcagcaagatgctgctcgatgtgccgccgccgcagaggcccgacgccgtcagcagc 21221 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 || || |||||||||| || || ||| |||||||||||||||| |||| || ||||||| Sbjct: 21222 ctcgtctacgaggccaacgcccgtatgagggaccccgtctacggctgcgtcgccgccatc 21281 Query: 358 tcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacaggccgag 417 |||| |||||| | || ||||||||||||||| ||||||| ||| |||| || |||||| Sbjct: 21282 tccttcctccagaaccaagtctcccagctccagatgcagctcgccctcgcccacgccgag 21341 Query: 418 a 418 | Sbjct: 21342 a 21342
>gb|AC134928.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1164G01, complete sequence Length = 151938 Score = 121 bits (61), Expect = 2e-24 Identities = 112/129 (86%) Strand = Plus / Minus Query: 292 agcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggc 351 |||||||||||||||||||| | || ||||||||||||||||||||||| |||| ||| Sbjct: 39794 agcagcctggtgtacgaggcgaacgcccggatgcgggaccccgtctacggctgcgtcggg 39735 Query: 352 gccatctcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacag 411 |||||||||| |||||| | ||||| || ||||| ||| ||||||| |||||||| ||| Sbjct: 39734 gccatctccttcctccagaaccaggtgtcgcagctgcagatgcagctcgccgtcgcgcag 39675 Query: 412 gccgagatc 420 ||||||||| Sbjct: 39674 gccgagatc 39666 Score = 103 bits (52), Expect = 5e-19 Identities = 121/144 (84%) Strand = Plus / Minus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 ||||||||||||| |||||||| |||||||||||||| ||| ||||||| | || |||| Sbjct: 40078 cgccgtgcgcgtcgtgcaagctgctgcggcggcggtgcaccaaggactgcatcttcgcgc 40019 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | | |||||| | || ||||||||| |||||||| ||| ||| |||||||||||||| Sbjct: 40018 ccttcttccccgccgacgacccccacaagttcgccatcgtccacaaggtcttcggcgcca 39959 Query: 236 gcaacgtgagcaagatgctgcagg 259 |||| || ||||||||||| |||| Sbjct: 39958 gcaatgtcagcaagatgctccagg 39935
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 121 bits (61), Expect = 2e-24 Identities = 112/129 (86%) Strand = Plus / Minus Query: 292 agcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggc 351 |||||||||||||||||||| | || ||||||||||||||||||||||| |||| ||| Sbjct: 16192437 agcagcctggtgtacgaggcgaacgcccggatgcgggaccccgtctacggctgcgtcggg 16192378 Query: 352 gccatctcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgcacag 411 |||||||||| |||||| | ||||| || ||||| ||| ||||||| |||||||| ||| Sbjct: 16192377 gccatctccttcctccagaaccaggtgtcgcagctgcagatgcagctcgccgtcgcgcag 16192318 Query: 412 gccgagatc 420 ||||||||| Sbjct: 16192317 gccgagatc 16192309 Score = 103 bits (52), Expect = 5e-19 Identities = 121/144 (84%) Strand = Plus / Minus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 ||||||||||||| |||||||| |||||||||||||| ||| ||||||| | || |||| Sbjct: 16192721 cgccgtgcgcgtcgtgcaagctgctgcggcggcggtgcaccaaggactgcatcttcgcgc 16192662 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | | |||||| | || ||||||||| |||||||| ||| ||| |||||||||||||| Sbjct: 16192661 ccttcttccccgccgacgacccccacaagttcgccatcgtccacaaggtcttcggcgcca 16192602 Query: 236 gcaacgtgagcaagatgctgcagg 259 |||| || ||||||||||| |||| Sbjct: 16192601 gcaatgtcagcaagatgctccagg 16192578 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 159 ggactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgca 218 |||||||||||| ||||| |||||||||||||| |||| || ||||| |||||| Sbjct: 20274106 ggactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtgcacgtgca 20274047 Query: 219 ccgggtcttcggcgccagcaacgtgagcaagatgctgcaggagctcc 265 |||||| |||||||| |||||||||| |||| ||||| | ||||||| Sbjct: 20274046 ccgggtgttcggcgcgagcaacgtgaccaagctgctgaacgagctcc 20274000 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 273 gcagcgggctgatgccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccc 332 ||||||||| || || ||||||||| ||||||||||||| | |||||||| |||||||| Sbjct: 1206624 gcagcgggcggacgcggtgagcagcatggtgtacgaggcgaacgcgcggatccgggaccc 1206565 Query: 333 cgtctacggatgcgccggcgccatct 358 || ||||| ||||| || ||||||| Sbjct: 1206564 ggtgtacggctgcgcgggggccatct 1206539 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Minus Query: 115 acgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcg 174 |||||||||||| | |||||||| || ||||||||||| || ||| ||| || || Sbjct: 3785010 acgccgtgcgcggcgtgcaagctgctccggcggcggtgcgcgcaggagtgccccttctcg 3784951 Query: 175 ccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcc 234 || |||||| ||||| ||| || ||| ||||||| |||||||| ||||||||||||| Sbjct: 3784950 ccgtacttctcgccgctggagccgcacaagttcgcctccgtgcacaaggtcttcggcgcc 3784891 Query: 235 agcaacgt 242 |||||||| Sbjct: 3784890 agcaacgt 3784883 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 204 gttcgccaccgtgcaccgggtcttcggcgccagcaac 240 |||| |||||| |||||| |||||||||||||||||| Sbjct: 1206782 gttcaccaccgcgcaccgcgtcttcggcgccagcaac 1206746 Score = 46.1 bits (23), Expect = 0.094 Identities = 53/63 (84%) Strand = Plus / Minus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccagcagcaggtctcccagctc 387 |||||||||||||| |||| ||||| ||||||| |||||||| ||| || ||||||| Sbjct: 20273937 gaccccgtctacggctgcgtcggcgtcatctccgtcctccagcaccagctccgccagctc 20273878 Query: 388 cag 390 ||| Sbjct: 20273877 cag 20273875 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 31 tatcttcccttctcttctcttctcta 56 ||||||| |||||||||||||||||| Sbjct: 26114597 tatcttctcttctcttctcttctcta 26114572 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctcta 56 ||||| |||||||||||||||||| Sbjct: 8604008 tcttctcttctcttctcttctcta 8604031 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 8603998 ctctctcttctcttctcttctcttctct 8604025 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cagcctggtgtacgaggcca 313 |||||||||||||||||||| Sbjct: 3783748 cagcctggtgtacgaggcca 3783729
>ref|XM_469116.1| Oryza sativa (japonica cultivar-group), mRNA Length = 645 Score = 115 bits (58), Expect = 1e-22 Identities = 211/262 (80%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 |||| |||||| | |||||||| |||||||||||||| || || |||||||| |||| Sbjct: 119 cgccatgcgcggcgtgcaagctgctgcggcggcggtgcgcggcggggtgcgtgttcgcgc 178 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | ||||||||||||| || || ||| |||||||| ||| ||| |||||||||||||| Sbjct: 179 cctacttcccgccgggcgagccgcacaagttcgccaacgtccacaaggtcttcggcgcca 238 Query: 236 gcaacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagca 295 |||| || |||||| | || |||||| | || | | ||| ||| || |||||||||| Sbjct: 239 gcaatgtcagcaagctcctccaggagataccggtgcagcacaggggggacgccgtgagca 298 Query: 296 gcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgcca 355 |||||||||||||||| | |||||| || ||||||| ||||||| |||| |||||||| Sbjct: 299 gcctggtgtacgaggcgaacgcgcgggtgagggacccgatctacggctgcgtcggcgcca 358 Query: 356 tctcctatctccagcagcaggt 377 |||| | || ||||||||||| Sbjct: 359 tctcgtcgctgcagcagcaggt 380
>ref|XM_467444.1| Oryza sativa (japonica cultivar-group), mRNA Length = 486 Score = 87.7 bits (44), Expect = 3e-14 Identities = 110/132 (83%) Strand = Plus / Plus Query: 289 gtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgcc 348 ||||||||||||||||| ||||| | | |||||||||||||| |||||||| |||| | Sbjct: 58 gtgagcagcctggtgtatgaggcgaacgaccggatgcgggacccagtctacggctgcgtc 117 Query: 349 ggcgccatctcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgca 408 || |||||||||| | ||| | ||||| || ||||| ||| ||||||| ||||||||| Sbjct: 118 ggggccatctccttcatgcagaaccaggtgtcacagctacagatgcagctcgccgtcgca 177 Query: 409 caggccgagatc 420 |||| ||||||| Sbjct: 178 cagggcgagatc 189
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 3e-14 Identities = 110/132 (83%) Strand = Plus / Plus Query: 289 gtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgcc 348 ||||||||||||||||| ||||| | | |||||||||||||| |||||||| |||| | Sbjct: 29563410 gtgagcagcctggtgtatgaggcgaacgaccggatgcgggacccagtctacggctgcgtc 29563469 Query: 349 ggcgccatctcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgca 408 || |||||||||| | ||| | ||||| || ||||| ||| ||||||| ||||||||| Sbjct: 29563470 ggggccatctccttcatgcagaaccaggtgtcacagctacagatgcagctcgccgtcgca 29563529 Query: 409 caggccgagatc 420 |||| ||||||| Sbjct: 29563530 cagggcgagatc 29563541 Score = 69.9 bits (35), Expect = 6e-09 Identities = 101/123 (82%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 ||||||||||||| |||||||| |||||||||||||| ||| ||| ||| | ||||||| Sbjct: 29551299 cgccgtgcgcgtcgtgcaagctgctgcggcggcggtgcaccaaggattgcatctttgcgc 29551358 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | | ||||||| | || || |||||| |||| ||| || ||| |||||||||||||| Sbjct: 29551359 ccttcttcccggccgacgaaccccacaagttcaccatagtccacaaggtcttcggcgcca 29551418 Query: 236 gca 238 ||| Sbjct: 29551419 gca 29551421 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 27 gctctatcttcccttctcttctcttctct 55 ||||| ||||| ||||||||||||||||| Sbjct: 24341967 gctctctcttctcttctcttctcttctct 24341995 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 tatcttcccttctcttctcttctct 55 ||||||| ||||||||||||||||| Sbjct: 24340470 tatcttctcttctcttctcttctct 24340494 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcccttctcttctcttctct 55 |||||||||||||||||||| Sbjct: 17887300 tcccttctcttctcttctct 17887281 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 5620552 ctctctcttctcttctcttctcttctct 5620525
>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1479_B12 Length = 127089 Score = 87.7 bits (44), Expect = 3e-14 Identities = 110/132 (83%) Strand = Plus / Plus Query: 289 gtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgcc 348 ||||||||||||||||| ||||| | | |||||||||||||| |||||||| |||| | Sbjct: 21131 gtgagcagcctggtgtatgaggcgaacgaccggatgcgggacccagtctacggctgcgtc 21190 Query: 349 ggcgccatctcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgca 408 || |||||||||| | ||| | ||||| || ||||| ||| ||||||| ||||||||| Sbjct: 21191 ggggccatctccttcatgcagaaccaggtgtcacagctacagatgcagctcgccgtcgca 21250 Query: 409 caggccgagatc 420 |||| ||||||| Sbjct: 21251 cagggcgagatc 21262 Score = 69.9 bits (35), Expect = 6e-09 Identities = 101/123 (82%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 ||||||||||||| |||||||| |||||||||||||| ||| ||| ||| | ||||||| Sbjct: 9020 cgccgtgcgcgtcgtgcaagctgctgcggcggcggtgcaccaaggattgcatctttgcgc 9079 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | | ||||||| | || || |||||| |||| ||| || ||| |||||||||||||| Sbjct: 9080 ccttcttcccggccgacgaaccccacaagttcaccatagtccacaaggtcttcggcgcca 9139 Query: 236 gca 238 ||| Sbjct: 9140 gca 9142
>gb|DQ327702.1| Hordeum vulgare ramosa 2 gene, partial cds Length = 771 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 162 ctgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcaccg 221 ||||||||| ||||| ||||||||||||||||| || || |||||||| ||||||| Sbjct: 123 ctgcgtgttcgcgccctacttcccgccggaggagccgcagaagttcgccaacgtgcacaa 182 Query: 222 ggtcttcggcgccagcaacgtgagcaagatgct 254 ||| ||||||||||||||||||| |||| |||| Sbjct: 183 ggtgttcggcgccagcaacgtgaccaagctgct 215 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 288 ggaccccgtctacggctgcgtcggcgccatctcc 321
>gb|DQ327701.1| Zea mays ramosa 2 (ra2) gene, complete cds Length = 6032 Score = 81.8 bits (41), Expect = 2e-12 Identities = 80/93 (86%) Strand = Plus / Plus Query: 163 tgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgg 222 |||||||| ||||| ||||||||||||||||| || || |||||||| ||||||| | Sbjct: 2679 tgcgtgttcgcgccctacttcccgccggaggagccgcagaagttcgccaacgtgcacaag 2738 Query: 223 gtcttcggcgccagcaacgtgagcaagatgctg 255 || ||||||||||||||||||| |||| ||||| Sbjct: 2739 gtgttcggcgccagcaacgtgaccaagctgctg 2771 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 2843 ggaccccgtctacggctgcgtcggcgccatctcc 2876
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 286 gccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgc 345 |||||||||||||||||||||||||| | |||||| || ||||||| ||||||| ||| Sbjct: 25558961 gccgtgagcagcctggtgtacgaggcgaacgcgcgggtgagggacccgatctacggctgc 25559020 Query: 346 gccggcgccatctcctatctccagcagcaggt 377 | |||||||||||| | || ||||||||||| Sbjct: 25559021 gtcggcgccatctcgtcgctgcagcagcaggt 25559052 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 |||| |||||| | |||||||| |||||||||||||| || || |||||||| |||| Sbjct: 25557390 cgccatgcgcggcgtgcaagctgctgcggcggcggtgcgcggcggggtgcgtgttcgcgc 25557449 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | ||||||||||||| || || ||| |||||||| ||| ||| |||||||||||||| Sbjct: 25557450 cctacttcccgccgggcgagccgcacaagttcgccaacgtccacaaggtcttcggcgcca 25557509 Query: 236 gcaacgtgagcaag 249 |||| || |||||| Sbjct: 25557510 gcaatgtcagcaag 25557523 Score = 44.1 bits (22), Expect = 0.37 Identities = 105/130 (80%), Gaps = 2/130 (1%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgc-cagggactgcgtgtttgcg 174 ||||||||||| | |||||||| ||||||||| ||| | ||||| |||||||| ||| Sbjct: 22935852 cgccgtgcgcggcgtgcaagctgctgcggcggaagtgcacgcaggg-gtgcgtgttcgcg 22935910 Query: 175 ccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcc 234 || |||||||||||||| | || | |||||||| ||||||| ||| |||||||| Sbjct: 22935911 ccctacttcccgccggaccagccggccaagttcgccaacgtgcacaaggtgttcggcgcg 22935970 Query: 235 agcaacgtga 244 |||||||||| Sbjct: 22935971 agcaacgtga 22935980 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 atcttcccttctcttctcttctct 55 |||||| ||||||||||||||||| Sbjct: 26157590 atcttctcttctcttctcttctct 26157613 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 276 gcgggctgatgccgtgagcagcctggtgtacgaggc 311 |||||| || || ||||||||| ||||||||||||| Sbjct: 9888750 gcgggcggacgcggtgagcagcatggtgtacgaggc 9888715
>gb|AC139174.3| Oryza sativa chromosome 3 BAC OSJNBb0065L20 genomic sequence, complete sequence Length = 167427 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Minus Query: 286 gccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgc 345 |||||||||||||||||||||||||| | |||||| || ||||||| ||||||| ||| Sbjct: 143390 gccgtgagcagcctggtgtacgaggcgaacgcgcgggtgagggacccgatctacggctgc 143331 Query: 346 gccggcgccatctcctatctccagcagcaggt 377 | |||||||||||| | || ||||||||||| Sbjct: 143330 gtcggcgccatctcgtcgctgcagcagcaggt 143299 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Minus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 |||| |||||| | |||||||| |||||||||||||| || || |||||||| |||| Sbjct: 144961 cgccatgcgcggcgtgcaagctgctgcggcggcggtgcgcggcggggtgcgtgttcgcgc 144902 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | ||||||||||||| || || ||| |||||||| ||| ||| |||||||||||||| Sbjct: 144901 cctacttcccgccgggcgagccgcacaagttcgccaacgtccacaaggtcttcggcgcca 144842 Query: 236 gcaacgtgagcaag 249 |||| || |||||| Sbjct: 144841 gcaatgtcagcaag 144828
>gb|DQ327703.1| Sorghum bicolor ramosa 2 gene, partial cds Length = 804 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 163 tgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgg 222 |||||||| ||||| ||||||||||||||||| || || |||||||| ||||||| | Sbjct: 130 tgcgtgttcgcgccctacttcccgccggaggagccgcagaagttcgccaacgtgcacaag 189 Query: 223 gtcttcggcgccagcaacgtgagcaagatgct 254 || ||||||||||||||||||| |||| |||| Sbjct: 190 gtgttcggcgccagcaacgtgaccaagctgct 221 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 294 ggaccccgtctacggctgcgtcggcgccatctcc 327
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 286 gccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgc 345 |||||||||||||||||||||||||| | |||||| || ||||||| ||||||| ||| Sbjct: 25650270 gccgtgagcagcctggtgtacgaggcgaacgcgcgggtgagggacccgatctacggctgc 25650329 Query: 346 gccggcgccatctcctatctccagcagcaggt 377 | |||||||||||| | || ||||||||||| Sbjct: 25650330 gtcggcgccatctcgtcgctgcagcagcaggt 25650361 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 |||| |||||| | |||||||| |||||||||||||| || || |||||||| |||| Sbjct: 25648699 cgccatgcgcggcgtgcaagctgctgcggcggcggtgcgcggcggggtgcgtgttcgcgc 25648758 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | ||||||||||||| || || ||| |||||||| ||| ||| |||||||||||||| Sbjct: 25648759 cctacttcccgccgggcgagccgcacaagttcgccaacgtccacaaggtcttcggcgcca 25648818 Query: 236 gcaacgtgagcaag 249 |||| || |||||| Sbjct: 25648819 gcaatgtcagcaag 25648832 Score = 44.1 bits (22), Expect = 0.37 Identities = 105/130 (80%), Gaps = 2/130 (1%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgc-cagggactgcgtgtttgcg 174 ||||||||||| | |||||||| ||||||||| ||| | ||||| |||||||| ||| Sbjct: 22928880 cgccgtgcgcggcgtgcaagctgctgcggcggaagtgcacgcaggg-gtgcgtgttcgcg 22928938 Query: 175 ccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcc 234 || |||||||||||||| | || | |||||||| ||||||| ||| |||||||| Sbjct: 22928939 ccctacttcccgccggaccagccggccaagttcgccaacgtgcacaaggtgttcggcgcg 22928998 Query: 235 agcaacgtga 244 |||||||||| Sbjct: 22928999 agcaacgtga 22929008 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 atcttcccttctcttctcttctct 55 |||||| ||||||||||||||||| Sbjct: 26248899 atcttctcttctcttctcttctct 26248922 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 276 gcgggctgatgccgtgagcagcctggtgtacgaggc 311 |||||| || || ||||||||| ||||||||||||| Sbjct: 9886871 gcgggcggacgcggtgagcagcatggtgtacgaggc 9886836
>dbj|AK071550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105E02, full insert sequence Length = 654 Score = 79.8 bits (40), Expect = 7e-12 Identities = 79/92 (85%) Strand = Plus / Plus Query: 286 gccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgc 345 |||||||||||||||||||||||||| | |||||| || ||||||| ||||||| ||| Sbjct: 16 gccgtgagcagcctggtgtacgaggcgaacgcgcgggtgagggacccgatctacggctgc 75 Query: 346 gccggcgccatctcctatctccagcagcaggt 377 | |||||||||||| | || ||||||||||| Sbjct: 76 gtcggcgccatctcgtcgctgcagcagcaggt 107
>gb|AY795560.1| Triticum aestivum AS2 mRNA, complete cds Length = 1237 Score = 75.8 bits (38), Expect = 1e-10 Identities = 89/106 (83%) Strand = Plus / Plus Query: 160 gactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcac 219 ||||||||||| ||||| |||||||||||||| |||| || ||||| ||||||| Sbjct: 348 gactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtgcacgtgcac 407 Query: 220 cgggtcttcggcgccagcaacgtgagcaagatgctgcaggagctcc 265 || |||||||||||||||||||||| |||| ||||| | ||||||| Sbjct: 408 cgcgtcttcggcgccagcaacgtgaccaagctgctgaacgagctcc 453
>ref|NM_190212.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 810 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 160 gactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcac 219 ||||||||||| ||||| |||||||||||||| |||| || ||||| | ||||||| Sbjct: 154 gactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcac 213 Query: 220 cgggtcttcggcgccagcaacgtgagcaagatgctg 255 || ||||||||||| |||||||||| |||| ||||| Sbjct: 214 cgcgtcttcggcgcgagcaacgtgaccaagctgctg 249
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 160 gactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcac 219 ||||||||||| ||||| |||||||||||||| |||| || ||||| | ||||||| Sbjct: 38670610 gactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcac 38670669 Query: 220 cgggtcttcggcgccagcaacgtgagcaagatgctg 255 || ||||||||||| |||||||||| |||| ||||| Sbjct: 38670670 cgcgtcttcggcgcgagcaacgtgaccaagctgctg 38670705 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/129 (82%), Gaps = 4/129 (3%) Strand = Plus / Minus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtg--tgccagggactgcgtgtttgc 173 ||||||||||| | |||||| ||||||||||| ||| |||| || ||||||||| || Sbjct: 3551099 cgccgtgcgcggcgtgcaagttcctgcggcggaagtgcctgccggg--ctgcgtgttcgc 3551042 Query: 174 gccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgc 233 |||||||||||||||||||| || || |||||||| ||| ||| ||| |||||||| Sbjct: 3551041 tccttacttcccgccggaggagccgcagaagttcgccaacgtccacaaggtgttcggcgc 3550982 Query: 234 cagcaacgt 242 ||| ||||| Sbjct: 3550981 cagtaacgt 3550973 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 204 gttcgccaccgtgcaccgggtcttcggcgccagcaacgtg 243 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 32586927 gttcgccgccgtgcacagggtgttcggcgccagcaacgtg 32586888 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 3550888 ggaccccgtctacggctgcgtcggcgccatctcc 3550855 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 |||||| ||||| | || |||||| ||||||| |||| ||| |||||||||||||||| Sbjct: 35251508 tacttctcgccgcacgagccccacaagttcgccgccgtccacaaggtcttcggcgccagc 35251567 Query: 238 aacgt 242 ||||| Sbjct: 35251568 aacgt 35251572 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 291 gagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccgg 350 ||||||||||||||||||||| | |||| |||| |||||||| ||||| ||| || Sbjct: 35251712 gagcagcctggtgtacgaggcgaatctgcggctgcgcgaccccgtgtacggctgcatggg 35251771 Query: 351 cgccatctc 359 ||||||||| Sbjct: 35251772 cgccatctc 35251780 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcccttctcttctcttctct 55 |||||||||||||||||||| Sbjct: 41935013 tcccttctcttctcttctct 41934994 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 364 ctccagcagcaggtctcccagctc 387 |||||| ||||||||||||||||| Sbjct: 5430115 ctccagaagcaggtctcccagctc 5430092 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 tcccttctcttctcttctct 55 |||||||||||||||||||| Sbjct: 4506723 tcccttctcttctcttctct 4506742 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 32 atcttcccttctcttctcttctct 55 |||||| ||||||||||||||||| Sbjct: 223454 atcttctcttctcttctcttctct 223431
>dbj|AB200237.1| Oryza sativa (japonica cultivar-group) CRLL3 mRNA for LOB domain protein, complete cds Length = 810 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 160 gactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcac 219 ||||||||||| ||||| |||||||||||||| |||| || ||||| | ||||||| Sbjct: 154 gactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcac 213 Query: 220 cgggtcttcggcgccagcaacgtgagcaagatgctg 255 || ||||||||||| |||||||||| |||| ||||| Sbjct: 214 cgcgtcttcggcgcgagcaacgtgaccaagctgctg 249
>dbj|AP003431.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1099D03 Length = 191022 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 160 gactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcac 219 ||||||||||| ||||| |||||||||||||| |||| || ||||| | ||||||| Sbjct: 128583 gactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcac 128642 Query: 220 cgggtcttcggcgccagcaacgtgagcaagatgctg 255 || ||||||||||| |||||||||| |||| ||||| Sbjct: 128643 cgcgtcttcggcgcgagcaacgtgaccaagctgctg 128678
>dbj|AK119575.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-B04, full insert sequence Length = 1515 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 160 gactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcac 219 ||||||||||| ||||| |||||||||||||| |||| || ||||| | ||||||| Sbjct: 622 gactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcac 681 Query: 220 cgggtcttcggcgccagcaacgtgagcaagatgctg 255 || ||||||||||| |||||||||| |||| ||||| Sbjct: 682 cgcgtcttcggcgcgagcaacgtgaccaagctgctg 717
>dbj|AK071407.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089G14, full insert sequence Length = 1464 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Plus Query: 160 gactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgcac 219 ||||||||||| ||||| |||||||||||||| |||| || ||||| | ||||||| Sbjct: 454 gactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtccacgtgcac 513 Query: 220 cgggtcttcggcgccagcaacgtgagcaagatgctg 255 || ||||||||||| |||||||||| |||| ||||| Sbjct: 514 cgcgtcttcggcgcgagcaacgtgaccaagctgctg 549
>gb|AC134933.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0579A05, complete sequence Length = 107407 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 159 ggactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgca 218 |||||||||||| ||||| |||||||||||||| |||| || ||||| |||||| Sbjct: 7696 ggactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtgcacgtgca 7637 Query: 219 ccgggtcttcggcgccagcaacgtgagcaagatgctgcaggagctcc 265 |||||| |||||||| |||||||||| |||| ||||| | ||||||| Sbjct: 7636 ccgggtgttcggcgcgagcaacgtgaccaagctgctgaacgagctcc 7590 Score = 46.1 bits (23), Expect = 0.094 Identities = 53/63 (84%) Strand = Plus / Minus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccagcagcaggtctcccagctc 387 |||||||||||||| |||| ||||| ||||||| |||||||| ||| || ||||||| Sbjct: 7527 gaccccgtctacggctgcgtcggcgtcatctccgtcctccagcaccagctccgccagctc 7468 Query: 388 cag 390 ||| Sbjct: 7467 cag 7465
>gb|AC137617.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0084P24, complete sequence Length = 148784 Score = 69.9 bits (35), Expect = 6e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 159 ggactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgca 218 |||||||||||| ||||| |||||||||||||| |||| || ||||| |||||| Sbjct: 112378 ggactgcgtgttcgcgccctacttcccgccggacaacccgcagaagttcgtgcacgtgca 112319 Query: 219 ccgggtcttcggcgccagcaacgtgagcaagatgctgcaggagctcc 265 |||||| |||||||| |||||||||| |||| ||||| | ||||||| Sbjct: 112318 ccgggtgttcggcgcgagcaacgtgaccaagctgctgaacgagctcc 112272 Score = 46.1 bits (23), Expect = 0.094 Identities = 53/63 (84%) Strand = Plus / Minus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccagcagcaggtctcccagctc 387 |||||||||||||| |||| ||||| ||||||| |||||||| ||| || ||||||| Sbjct: 112209 gaccccgtctacggctgcgtcggcgtcatctccgtcctccagcaccagctccgccagctc 112150 Query: 388 cag 390 ||| Sbjct: 112149 cag 112147
>dbj|AP003983.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1038_A06 Length = 147836 Score = 69.9 bits (35), Expect = 6e-09 Identities = 101/123 (82%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcgc 175 ||||||||||||| |||||||| |||||||||||||| ||| ||| ||| | ||||||| Sbjct: 146329 cgccgtgcgcgtcgtgcaagctgctgcggcggcggtgcaccaaggattgcatctttgcgc 146388 Query: 176 cttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcca 235 | | ||||||| | || || |||||| |||| ||| || ||| |||||||||||||| Sbjct: 146389 ccttcttcccggccgacgaaccccacaagttcaccatagtccacaaggtcttcggcgcca 146448 Query: 236 gca 238 ||| Sbjct: 146449 gca 146451
>ref|XM_475524.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 438 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Plus Query: 273 gcagcgggctgatgccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccc 332 ||||||||| || || ||||||||| ||||||||||||| | |||||||| |||||||| Sbjct: 54 gcagcgggcggacgcggtgagcagcatggtgtacgaggcgaacgcgcggatccgggaccc 113 Query: 333 cgtctacggatgcgccggcgccatct 358 || ||||| ||||| || ||||||| Sbjct: 114 ggtgtacggctgcgcgggggccatct 139
>gb|AC079021.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0008A07, complete sequence Length = 135809 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 273 gcagcgggctgatgccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccc 332 ||||||||| || || ||||||||| ||||||||||||| | |||||||| |||||||| Sbjct: 1437 gcagcgggcggacgcggtgagcagcatggtgtacgaggcgaacgcgcggatccgggaccc 1378 Query: 333 cgtctacggatgcgccggcgccatct 358 || ||||| ||||| || ||||||| Sbjct: 1377 ggtgtacggctgcgcgggggccatct 1352 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 204 gttcgccaccgtgcaccgggtcttcggcgccagcaac 240 |||| |||||| |||||| |||||||||||||||||| Sbjct: 1595 gttcaccaccgcgcaccgcgtcttcggcgccagcaac 1559
>emb|AL731639.3|OSJN00288 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence Length = 112404 Score = 67.9 bits (34), Expect = 3e-08 Identities = 106/130 (81%) Strand = Plus / Plus Query: 289 gtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgcc 348 ||||||||||||||||||||||| | | |||||||||||||| ||||||| |||| | Sbjct: 93394 gtgagcagcctggtgtacgaggcgaacgaccggatgcgggacccagtctacgactgcgtc 93453 Query: 349 ggcgccatctcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgca 408 | |||||||||| || ||| | ||||| || ||||| ||| ||||||| ||| ||| | Sbjct: 93454 agggccatctccttcctgcagaaccaggtgtcacagctgcagatgcagctcgccatcgga 93513 Query: 409 caggccgaga 418 |||| ||||| Sbjct: 93514 cagggcgaga 93523
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 3e-08 Identities = 106/130 (81%) Strand = Plus / Plus Query: 289 gtgagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgcc 348 ||||||||||||||||||||||| | | |||||||||||||| ||||||| |||| | Sbjct: 20123489 gtgagcagcctggtgtacgaggcgaacgaccggatgcgggacccagtctacgactgcgtc 20123548 Query: 349 ggcgccatctcctatctccagcagcaggtctcccagctccaggtgcagctggccgtcgca 408 | |||||||||| || ||| | ||||| || ||||| ||| ||||||| ||| ||| | Sbjct: 20123549 agggccatctccttcctgcagaaccaggtgtcacagctgcagatgcagctcgccatcgga 20123608 Query: 409 caggccgaga 418 |||| ||||| Sbjct: 20123609 cagggcgaga 20123618
>gb|AC093089.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1729_E02, complete sequence Length = 90509 Score = 67.9 bits (34), Expect = 3e-08 Identities = 73/86 (84%) Strand = Plus / Minus Query: 273 gcagcgggctgatgccgtgagcagcctggtgtacgaggccacagcgcggatgcgggaccc 332 ||||||||| || || ||||||||| ||||||||||||| | |||||||| |||||||| Sbjct: 56910 gcagcgggcggacgcggtgagcagcatggtgtacgaggcgaacgcgcggatccgggaccc 56851 Query: 333 cgtctacggatgcgccggcgccatct 358 || ||||| ||||| || ||||||| Sbjct: 56850 ggtgtacggctgcgcgggggccatct 56825 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 204 gttcgccaccgtgcaccgggtcttcggcgccagcaac 240 |||| |||||| |||||| |||||||||||||||||| Sbjct: 57068 gttcaccaccgcgcaccgcgtcttcggcgccagcaac 57032
>ref|XM_462810.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1324 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/129 (82%), Gaps = 4/129 (3%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtg--tgccagggactgcgtgtttgc 173 ||||||||||| | |||||| ||||||||||| ||| |||| || ||||||||| || Sbjct: 381 cgccgtgcgcggcgtgcaagttcctgcggcggaagtgcctgccggg--ctgcgtgttcgc 438 Query: 174 gccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgc 233 |||||||||||||||||||| || || |||||||| ||| ||| ||| |||||||| Sbjct: 439 tccttacttcccgccggaggagccgcagaagttcgccaacgtccacaaggtgttcggcgc 498 Query: 234 cagcaacgt 242 ||| ||||| Sbjct: 499 cagtaacgt 507 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 592 ggaccccgtctacggctgcgtcggcgccatctcc 625
>dbj|AB200238.1| Oryza sativa (japonica cultivar-group) CRLL4 mRNA for LOB domain protein, complete cds Length = 756 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/129 (82%), Gaps = 4/129 (3%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtg--tgccagggactgcgtgtttgc 173 ||||||||||| | |||||| ||||||||||| ||| |||| || ||||||||| || Sbjct: 86 cgccgtgcgcggcgtgcaagttcctgcggcggaagtgcctgccggg--ctgcgtgttcgc 143 Query: 174 gccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgc 233 |||||||||||||||||||| || || |||||||| ||| ||| ||| |||||||| Sbjct: 144 tccttacttcccgccggaggagccgcagaagttcgccaacgtccacaaggtgttcggcgc 203 Query: 234 cagcaacgt 242 ||| ||||| Sbjct: 204 cagtaacgt 212 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 297 ggaccccgtctacggctgcgtcggcgccatctcc 330
>dbj|AP003339.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1276_B06 Length = 175174 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/129 (82%), Gaps = 4/129 (3%) Strand = Plus / Minus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtg--tgccagggactgcgtgtttgc 173 ||||||||||| | |||||| ||||||||||| ||| |||| || ||||||||| || Sbjct: 119167 cgccgtgcgcggcgtgcaagttcctgcggcggaagtgcctgccggg--ctgcgtgttcgc 119110 Query: 174 gccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgc 233 |||||||||||||||||||| || || |||||||| ||| ||| ||| |||||||| Sbjct: 119109 tccttacttcccgccggaggagccgcagaagttcgccaacgtccacaaggtgttcggcgc 119050 Query: 234 cagcaacgt 242 ||| ||||| Sbjct: 119049 cagtaacgt 119041 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 118956 ggaccccgtctacggctgcgtcggcgccatctcc 118923
>dbj|AK105527.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G05, full insert sequence Length = 1324 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/129 (82%), Gaps = 4/129 (3%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtg--tgccagggactgcgtgtttgc 173 ||||||||||| | |||||| ||||||||||| ||| |||| || ||||||||| || Sbjct: 381 cgccgtgcgcggcgtgcaagttcctgcggcggaagtgcctgccggg--ctgcgtgttcgc 438 Query: 174 gccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgc 233 |||||||||||||||||||| || || |||||||| ||| ||| ||| |||||||| Sbjct: 439 tccttacttcccgccggaggagccgcagaagttcgccaacgtccacaaggtgttcggcgc 498 Query: 234 cagcaacgt 242 ||| ||||| Sbjct: 499 cagtaacgt 507 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 592 ggaccccgtctacggctgcgtcggcgccatctcc 625
>dbj|AP002912.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028E10 Length = 140791 Score = 61.9 bits (31), Expect = 2e-06 Identities = 106/129 (82%), Gaps = 4/129 (3%) Strand = Plus / Minus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtg--tgccagggactgcgtgtttgc 173 ||||||||||| | |||||| ||||||||||| ||| |||| || ||||||||| || Sbjct: 137859 cgccgtgcgcggcgtgcaagttcctgcggcggaagtgcctgccggg--ctgcgtgttcgc 137802 Query: 174 gccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgc 233 |||||||||||||||||||| || || |||||||| ||| ||| ||| |||||||| Sbjct: 137801 tccttacttcccgccggaggagccgcagaagttcgccaacgtccacaaggtgttcggcgc 137742 Query: 234 cagcaacgt 242 ||| ||||| Sbjct: 137741 cagtaacgt 137733 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 327 ggaccccgtctacggatgcgccggcgccatctcc 360 ||||||||||||||| |||| ||||||||||||| Sbjct: 137648 ggaccccgtctacggctgcgtcggcgccatctcc 137615
>gb|AY940681.1| Zea mays ASYMMETRIC LEAVES2 mRNA, complete cds Length = 1442 Score = 61.9 bits (31), Expect = 2e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 159 ggactgcgtgtttgcgccttacttcccgccggaggacccccaccggttcgccaccgtgca 218 |||||||||||| ||||| |||||||| ||||| |||| || ||||| |||||| Sbjct: 288 ggactgcgtgttcgcgccctacttcccaccggacaacccgcagaagttcgtgcacgtgca 347 Query: 219 ccgggtcttcggcgccagcaacgtgagcaagatgctgcaggagctcc 265 ||| ||||||||||| |||||||||| |||| ||||| | ||||||| Sbjct: 348 ccgcgtcttcggcgcgagcaacgtgaccaagctgctgaacgagctcc 394 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 328 gaccccgtctacggatgcgccggcgccatctcc 360 |||||||||||||| |||| ||||| ||||||| Sbjct: 457 gaccccgtctacggctgcgtcggcgtcatctcc 489
>ref|XM_475658.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 624 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Plus Query: 115 acgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcg 174 |||||||||||| | |||||||| || ||||||||||| || ||| ||| || || Sbjct: 76 acgccgtgcgcggcgtgcaagctgctccggcggcggtgcgcgcaggagtgccccttctcg 135 Query: 175 ccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcc 234 || |||||| ||||| ||| || ||| ||||||| |||||||| ||||||||||||| Sbjct: 136 ccgtacttctcgccgctggagccgcacaagttcgcctccgtgcacaaggtcttcggcgcc 195 Query: 235 agcaacgt 242 |||||||| Sbjct: 196 agcaacgt 203 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cagcctggtgtacgaggcca 313 |||||||||||||||||||| Sbjct: 255 cagcctggtgtacgaggcca 274
>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0027N19, complete sequence Length = 141368 Score = 56.0 bits (28), Expect = 1e-04 Identities = 103/128 (80%) Strand = Plus / Minus Query: 115 acgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgccagggactgcgtgtttgcg 174 |||||||||||| | |||||||| || ||||||||||| || ||| ||| || || Sbjct: 105940 acgccgtgcgcggcgtgcaagctgctccggcggcggtgcgcgcaggagtgccccttctcg 105881 Query: 175 ccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcc 234 || |||||| ||||| ||| || ||| ||||||| |||||||| ||||||||||||| Sbjct: 105880 ccgtacttctcgccgctggagccgcacaagttcgcctccgtgcacaaggtcttcggcgcc 105821 Query: 235 agcaacgt 242 |||||||| Sbjct: 105820 agcaacgt 105813 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 cagcctggtgtacgaggcca 313 |||||||||||||||||||| Sbjct: 104678 cagcctggtgtacgaggcca 104659
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 204 gttcgccaccgtgcaccgggtcttcggcgccagcaacgtg 243 ||||||| |||||||| |||| |||||||||||||||||| Sbjct: 49722 gttcgccgccgtgcacagggtgttcggcgccagcaacgtg 49683
>gb|AC152495.1| Zea mays BAC clone Z486N13, complete sequence Length = 169348 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 326 gggaccccgtctacggatgcgccggcgccatctcctatctccagcagcaggtctcccagc 385 ||||||| ||||| || |||| |||||||||||| |||||||| ||| ||||||||| Sbjct: 3566 gggaccctgtctatggctgcgtgggcgccatctccgtgctccagcaacagatctcccagc 3625 Query: 386 tccaggtgcag 396 ||||| ||||| Sbjct: 3626 tccagatgcag 3636
>ref|NM_189019.1| Oryza sativa (japonica cultivar-group), mRNA Length = 366 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 213 cgtgcaccgggtcttcggcgccagcaacgt 242 ||||||| |||||||||||||||||||||| Sbjct: 312 cgtgcacagggtcttcggcgccagcaacgt 341
>ref|NM_190397.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 789 Score = 52.0 bits (26), Expect = 0.002 Identities = 143/182 (78%) Strand = Plus / Plus Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 |||||| ||||| | || |||||| ||||||| |||| ||| |||||||||||||||| Sbjct: 268 tacttctcgccgcacgagccccacaagttcgccgccgtccacaaggtcttcggcgccagc 327 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||| | |||| || | |||| || | || || || | ||||||| Sbjct: 328 aacgtctccaagatgctcctggaggtcggcgaggcggagagagccgacgcggcgagcagc 387 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 |||||||||||||| | |||| |||| |||||||| ||||| ||| ||||||||| Sbjct: 388 ctggtgtacgaggcgaatctgcggctgcgcgaccccgtgtacggctgcatgggcgccatc 447 Query: 358 tc 359 || Sbjct: 448 tc 449
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 213 cgtgcaccgggtcttcggcgccagcaacgt 242 ||||||| |||||||||||||||||||||| Sbjct: 25644171 cgtgcacagggtcttcggcgccagcaacgt 25644200 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 3320304 tcttcccttctcttctcttctct 3320282
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 213 cgtgcaccgggtcttcggcgccagcaacgt 242 ||||||| |||||||||||||||||||||| Sbjct: 130862 cgtgcacagggtcttcggcgccagcaacgt 130891
>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0700D12 Length = 145177 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 213 cgtgcaccgggtcttcggcgccagcaacgt 242 ||||||| |||||||||||||||||||||| Sbjct: 21919 cgtgcacagggtcttcggcgccagcaacgt 21948
>dbj|AK121919.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106D14, full insert sequence Length = 1129 Score = 52.0 bits (26), Expect = 0.002 Identities = 143/182 (78%) Strand = Plus / Plus Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 |||||| ||||| | || |||||| ||||||| |||| ||| |||||||||||||||| Sbjct: 407 tacttctcgccgcacgagccccacaagttcgccgccgtccacaaggtcttcggcgccagc 466 Query: 238 aacgtgagcaagatgctgcaggagctccctgcggcgcagcgggctgatgccgtgagcagc 297 ||||| ||||||||| | |||| || | |||| || | || || || | ||||||| Sbjct: 467 aacgtctccaagatgctcctggaggtcggcgaggcggagagagccgacgcggcgagcagc 526 Query: 298 ctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccggcgccatc 357 |||||||||||||| | |||| |||| |||||||| ||||| ||| ||||||||| Sbjct: 527 ctggtgtacgaggcgaatctgcggctgcgcgaccccgtgtacggctgcatgggcgccatc 586 Query: 358 tc 359 || Sbjct: 587 tc 588
>dbj|AK112071.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-120-E04, full insert sequence Length = 626 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Plus Query: 213 cgtgcaccgggtcttcggcgccagcaacgt 242 ||||||| |||||||||||||||||||||| Sbjct: 398 cgtgcacagggtcttcggcgccagcaacgt 427
>dbj|AP003230.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0031D02 Length = 183692 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 |||||| ||||| | || |||||| ||||||| |||| ||| |||||||||||||||| Sbjct: 130592 tacttctcgccgcacgagccccacaagttcgccgccgtccacaaggtcttcggcgccagc 130651 Query: 238 aacgt 242 ||||| Sbjct: 130652 aacgt 130656 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 291 gagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccgg 350 ||||||||||||||||||||| | |||| |||| |||||||| ||||| ||| || Sbjct: 130796 gagcagcctggtgtacgaggcgaatctgcggctgcgcgaccccgtgtacggctgcatggg 130855 Query: 351 cgccatctc 359 ||||||||| Sbjct: 130856 cgccatctc 130864
>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E11 Length = 146083 Score = 50.1 bits (25), Expect = 0.006 Identities = 55/65 (84%) Strand = Plus / Plus Query: 178 tacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgccagc 237 |||||| ||||| | || |||||| ||||||| |||| ||| |||||||||||||||| Sbjct: 15369 tacttctcgccgcacgagccccacaagttcgccgccgtccacaaggtcttcggcgccagc 15428 Query: 238 aacgt 242 ||||| Sbjct: 15429 aacgt 15433 Score = 42.1 bits (21), Expect = 1.5 Identities = 57/69 (82%) Strand = Plus / Plus Query: 291 gagcagcctggtgtacgaggccacagcgcggatgcgggaccccgtctacggatgcgccgg 350 ||||||||||||||||||||| | |||| |||| |||||||| ||||| ||| || Sbjct: 15573 gagcagcctggtgtacgaggcgaatctgcggctgcgcgaccccgtgtacggctgcatggg 15632 Query: 351 cgccatctc 359 ||||||||| Sbjct: 15633 cgccatctc 15641
>gb|AC171181.3| Pan troglodytes BAC clone CH251-214F24 from chromosome unknown, complete sequence Length = 165414 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 atcttcccttctcttctcttctct 55 |||||||||||||||||||||||| Sbjct: 65012 atcttcccttctcttctcttctct 64989
>emb|AL353648.27| Human DNA sequence from clone RP11-550P23 on chromosome 13 Contains the HMGB1 gene for high mobility group box 1 (HMG1 HMG3), a novel gene, a novel pseudogene, a microfibrillar-associated protein 1 (MFAP1) pseudogene, a protein tyrosine phosphatase, non-receptor type 2 (PTPN2) pseudogene and a CpG island, complete sequence Length = 133867 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 atcttcccttctcttctcttctct 55 |||||||||||||||||||||||| Sbjct: 42218 atcttcccttctcttctcttctct 42195
>gb|AC116546.1| Homo sapiens 3 BAC RP11-312H1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160421 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 32 atcttcccttctcttctcttctct 55 |||||||||||||||||||||||| Sbjct: 56300 atcttcccttctcttctcttctct 56277
>gb|AY795561.1| Triticum aestivum LOB1 mRNA, complete cds Length = 1020 Score = 48.1 bits (24), Expect = 0.024 Identities = 87/108 (80%) Strand = Plus / Plus Query: 204 gttcgccaccgtgcaccgggtcttcggcgccagcaacgtgagcaagatgctgcaggagct 263 ||||||| |||| ||| ||||||||||||||||||||| ||||||||| | |||| | Sbjct: 307 gttcgccgccgtccacaaggtcttcggcgccagcaacgtctccaagatgctcctggaggt 366 Query: 264 ccctgcggcgcagcgggctgatgccgtgagcagcctggtgtacgaggc 311 || | | || || | || || || | ||||||||||||||||||||| Sbjct: 367 gcccgagccggagagagccgacgcggcgagcagcctggtgtacgaggc 414
>gb|AC107776.12| Mus musculus chromosome 17, clone RP23-92G2, complete sequence Length = 147077 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||||||||| ||||||||||||||||| Sbjct: 46221 ctctatcttctcttctcttctcttctct 46248
>gb|AC154343.1| Mus musculus BAC clone RP23-235M17 from 17, complete sequence Length = 172493 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||||||||| ||||||||||||||||| Sbjct: 146422 ctctatcttctcttctcttctcttctct 146449
>gb|AC115877.13| Mus musculus chromosome 15, clone RP24-358H21, complete sequence Length = 169136 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 21333 tcttcccttctcttctcttctct 21355
>gb|AC167812.4| Mus musculus BAC clone RP24-299F5 from chromosome 18, complete sequence Length = 193523 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 167136 tcttcccttctcttctcttctct 167158
>ref|XM_480184.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1223 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 934 tcttcccttctcttctcttctct 956
>gb|AF009663.1|HSTCRB75A Homo sapiens T cell receptor beta locus, TCRBV8S5P to TCRBV21S2A2 region Length = 136975 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 122553 tcttcccttctcttctcttctct 122531
>gb|AF009661.1|HSTCRBA120 Homo sapiens T cell receptor beta locus, TCRBV6S4A1 to TCRBV8S1 region Length = 36059 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 17600 tcttcccttctcttctcttctct 17578
>gb|AC163015.4| Mus musculus chromosome 3, clone RP23-149I5, complete sequence Length = 200423 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 60995 tcttcccttctcttctcttctct 61017 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 atcttcccttctcttctcttctct 55 |||||| ||||||||||||||||| Sbjct: 61248 atcttctcttctcttctcttctct 61271 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 32 atcttcccttctcttctcttctct 55 |||||| ||||||||||||||||| Sbjct: 61086 atcttctcttctcttctcttctct 61109
>gb|AY184055.1| Drosophila melanogaster clone TTCTC48 centromeric satellite sequence Length = 219 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 162 tcttcccttctcttctcttctct 184 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 186 ctctctcttctcttctcttctcttctct 213
>gb|AY184054.1| Drosophila melanogaster clone TTCTC47 centromeric satellite sequence Length = 236 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 172 tcttcccttctcttctcttctct 194
>gb|AY184031.1| Drosophila melanogaster clone TTCTC24 centromeric satellite sequence Length = 79 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 36 tcttcccttctcttctcttctct 58
>gb|AY183922.1| Drosophila melanogaster centromeric satellite sequence containing transposon You Length = 7568 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 7518 tcttcccttctcttctcttctct 7540 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 7483 tcttcccttctcttctcttctct 7505
>gb|AC131919.13| Mus musculus chromosome 15, clone RP24-239J20, complete sequence Length = 177896 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 29382 tcttcccttctcttctcttctct 29360
>gb|AC119969.15| Mus musculus chromosome 7, clone RP24-474K16, complete sequence Length = 145231 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 83770 tcttcccttctcttctcttctct 83792
>gb|AC132832.13| Mus musculus chromosome 9, clone RP23-48D19, complete sequence Length = 230772 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 189526 tcttcccttctcttctcttctct 189548
>gb|AC122283.3| Mus musculus BAC clone RP23-242G6 from chromosome 10, complete sequence Length = 184346 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 170895 tcttcccttctcttctcttctct 170917
>ref|NG_001333.1| Homo sapiens T cell receptor beta locus (TRB@) on chromosome 7 Length = 684973 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 377881 tcttcccttctcttctcttctct 377859
>gb|AC158364.4| Mus musculus BAC clone RP23-187J8 from chromosome 8, complete sequence Length = 208153 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 55550 tcttcccttctcttctcttctct 55528
>gb|AC140980.3| Mus musculus BAC clone RP24-255K12 from chromosome 18, complete sequence Length = 186798 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 171009 tcttcccttctcttctcttctct 170987
>gb|DQ483978.1| Gymnogyps californianus clone 144G microsatellite sequence Length = 664 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 213 tcttcccttctcttctcttctct 191
>gb|AC124345.4| Mus musculus BAC clone RP24-459N19 from chromosome 15, complete sequence Length = 184532 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 127909 tcttcccttctcttctcttctct 127931
>gb|AC118248.11| Mus musculus chromosome 8, clone RP23-379H17, complete sequence Length = 182510 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 49880 tcttcccttctcttctcttctct 49902
>gb|AC121893.3| Mus musculus BAC clone RP24-157C12 from chromosome 16, complete sequence Length = 137384 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 48500 tcttcccttctcttctcttctct 48478
>gb|AC125329.4| Mus musculus BAC clone RP23-198F7 from 10, complete sequence Length = 211931 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 95179 tcttcccttctcttctcttctct 95157
>gb|AC125207.5| Mus musculus BAC clone RP23-220C16 from 8, complete sequence Length = 189936 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 156930 tcttcccttctcttctcttctct 156908
>gb|AC122287.4| Mus musculus BAC clone RP23-253A15 from 1, complete sequence Length = 226926 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 79517 tcttcccttctcttctcttctct 79539
>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence Length = 237590 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Plus Query: 21 tccattgctctatcttcccttctcttctcttctct 55 |||||| |||| ||||| ||||||||||||||||| Sbjct: 232959 tccatttctctctcttctcttctcttctcttctct 232993
>emb|AL450163.12| Human DNA sequence from clone RP11-384L19 on chromosome 1 Contains part of the gene for C-terminal PDZ domain ligand of neuronal nitric oxide synthase (CAPON), complete sequence Length = 208408 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 158062 tcttcccttctcttctcttctct 158084
>emb|AL391844.12| Human DNA sequence from clone RP11-342A17 on chromosome 1 Contains the 3' end of the gene for a novel protein and the 5' end of a ribosomal protein L21 (RPL21) pseudogene, complete sequence Length = 97845 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 91184 tcttcccttctcttctcttctct 91162
>emb|AL360220.12| Human DNA sequence from clone RP11-173B15 on chromosome 6 Contains part of the KHDRBS2 gene for KH domain containing RNA binding signal transduction associated protein 2, complete sequence Length = 108044 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 88140 tcttcccttctcttctcttctct 88162
>emb|AL022344.3|HSY214H10 Human DNA sequence from clone XX-Y214H10 on chromosome 10 Contains a vomeronasal receptor (V1R) pseudogene, a cubilin (intrinsic factor-cobalamin receptor) (CUBN) pseudogene, gene KIAA0187, two novel genes, the gene for a novel protein similar to Ras suppressor protein 1 (RSU1) and four CpG islands, complete sequence Length = 197864 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 116898 tcttcccttctcttctcttctct 116876
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence Length = 205629 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 97889 tcttcccttctcttctcttctct 97911 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 tatcttcccttctcttctcttctct 55 ||||||| ||||||||||||||||| Sbjct: 72174 tatcttctcttctcttctcttctct 72198
>gb|AC164650.3| Mus musculus BAC clone RP23-47A4 from chromosome 1, complete sequence Length = 200598 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 120315 tcttcccttctcttctcttctct 120337
>emb|AL645764.15| Mouse DNA sequence from clone RP23-290B5 on chromosome 11 Contains the 5' end of the gene for a novel protein (9330163N21Rik), a ribosomal protein S2 (Rps2) pseudogene, the gene for a novel protein (E130018012Rik), the gene for a novel protein (6820428D13Rik), the Mrpl27 gene for mitochondrial ribosomal protein L27, the Xylt2 gene for xylosyltransferase II, a novel gene (5330426M11Rik), the gene for a novel protein (C230057C09Rik), the gene for a novel protein similar to Cdc34 and two pseudogenes similar to hypothetical protein Tr:Q8C517, complete sequence Length = 203262 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 132344 tcttcccttctcttctcttctct 132366
>emb|AL669840.5| Mouse DNA sequence from clone RP23-43J1 on chromosome 11, complete sequence Length = 103555 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 70030 tcttcccttctcttctcttctct 70052
>gb|AC159188.2| Mus musculus BAC clone RP24-247J24 from chromosome 13, complete sequence Length = 197018 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 102907 tcttcccttctcttctcttctct 102885 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttc 52 |||||||||||||||||||| Sbjct: 102922 tcttcccttctcttctcttc 102903
>gb|AC044913.7| Homo sapiens chromosome 15, clone RP11-446P9, complete sequence Length = 161549 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 134388 tcttcccttctcttctcttctct 134410
>gb|DP000055.1| Pan troglodytes chromosome Y chry_random_1 genomic scaffold Length = 276070 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 225500 tcttcccttctcttctcttctct 225478
>gb|AC055820.7| Homo sapiens chromosome 18, clone RP11-636O21, complete sequence Length = 198543 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 174243 tcttcccttctcttctcttctct 174265
>gb|AC016205.7| Homo sapiens, clone RP11-25C13, complete sequence Length = 167292 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 77977 tcttcccttctcttctcttctct 77955
>gb|AC159267.2| Mus musculus BAC clone RP23-460B2 from chromosome 14, complete sequence Length = 204629 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 131198 tcttcccttctcttctcttctct 131220
>gb|AC148697.1| Macaca mulatta Major Histocompatibility Complex BAC MMU248N17, complete sequence Length = 167487 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 30217 tcttcccttctcttctcttctct 30195
>gb|AC148693.1| Macaca mulatta Major Histocompatibility Complex BAC MMU240D05, complete sequence Length = 161692 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 135566 tcttcccttctcttctcttctct 135544
>gb|AC152977.1| Mus musculus 10 BAC RP23-251I19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192515 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 186219 tcttcccttctcttctcttctct 186197
>gb|AC159473.7| Mus musculus 10 BAC RP23-215E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190387 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 55676 tcttcccttctcttctcttctct 55654
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 19210304 tcttcccttctcttctcttctct 19210282 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 35 ttcccttctcttctcttctct 55 ||||||||||||||||||||| Sbjct: 20870674 ttcccttctcttctcttctct 20870694 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 35 ttcccttctcttctcttctct 55 ||||||||||||||||||||| Sbjct: 19470751 ttcccttctcttctcttctct 19470731 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 tatcttcccttctcttctcttctct 55 ||||||| ||||||||||||||||| Sbjct: 244016 tatcttctcttctcttctcttctct 244040 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 10733759 ctctctcttctcttctcttctcttctct 10733786
>gb|AC154838.2| Mus musculus BAC clone RP23-64F2 from chromosome 14, complete sequence Length = 224431 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 135196 tcttcccttctcttctcttctct 135218
>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence Length = 203106 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 9646 tcttcccttctcttctcttctct 9624
>gb|AC108059.6| Homo sapiens BAC clone RP11-398G9 from 2, complete sequence Length = 124950 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 30941 tcttcccttctcttctcttctct 30963
>gb|AC139665.7| Homo sapiens 3 BAC RP11-171J7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 68343 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 37590 tcttcccttctcttctcttctct 37612
>dbj|AP004745.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001B01 Length = 147585 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 48068 tcttcccttctcttctcttctct 48046
>dbj|AP005470.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0043B22 Length = 158857 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 113789 tcttcccttctcttctcttctct 113767
>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0438H08 Length = 148626 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 97871 tcttcccttctcttctcttctct 97849
>dbj|AK108144.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E12, full insert sequence Length = 1223 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 934 tcttcccttctcttctcttctct 956
>gb|AC155244.2| Mus musculus BAC clone RP24-318B2 from 13, complete sequence Length = 198847 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 110 tcttcccttctcttctcttctct 132 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttc 52 |||||||||||||||||||| Sbjct: 95 tcttcccttctcttctcttc 114
>gb|AC163728.4| Pan troglodytes BAC clone CH251-589C1 from chromosome y, complete sequence Length = 206451 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 155882 tcttcccttctcttctcttctct 155860
>gb|AC163716.3| Pan troglodytes BAC clone CH251-828J24 from chromosome y, complete sequence Length = 165274 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 10719 tcttcccttctcttctcttctct 10741
>gb|AC121315.14| Mus musculus chromosome 3, clone RP24-488I7, complete sequence Length = 153807 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Plus Query: 21 tccattgctctatcttcccttctcttctcttctct 55 |||||| |||| ||||| ||||||||||||||||| Sbjct: 24103 tccatttctctctcttctcttctcttctcttctct 24137
>gb|AC118727.7| Mus musculus chromosome 9, clone RP24-166N8, complete sequence Length = 169165 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 21956 tcttcccttctcttctcttctct 21978
>emb|CT030705.12| Mouse DNA sequence from clone RP23-118N11 on chromosome 13, complete sequence Length = 125516 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 121519 tcttcccttctcttctcttctct 121541 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttc 52 |||||||||||||||||||| Sbjct: 121504 tcttcccttctcttctcttc 121523
>gb|AC159644.3| Mus musculus BAC clone RP23-358A18 from chromosome 12, complete sequence Length = 196310 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 53385 tcttcccttctcttctcttctct 53363
>emb|BX005191.10| Mouse DNA sequence from clone RP23-433C8 on chromosome X, complete sequence Length = 134264 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 5011 tcttcccttctcttctcttctct 4989
>gb|CP000168.1| Drosophila melanogaster genomic scaffold 211000022278924 Length = 48586 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 47806 tcttcccttctcttctcttctct 47828
>gb|AC124759.4| Mus musculus BAC clone RP23-132N7 from 1, complete sequence Length = 200104 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 75320 tcttcccttctcttctcttctct 75342
>gb|AC132383.5| Mus musculus BAC clone RP23-434M19 from 10, complete sequence Length = 212242 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 11375 tcttcccttctcttctcttctct 11397
>emb|AL691416.9| Mouse DNA sequence from clone RP23-110I8 on chromosome 2, complete sequence Length = 208363 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 65268 tcttcccttctcttctcttctct 65246 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 65297 cttcccttctcttctcttctct 65276
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 1340063 tcttcccttctcttctcttctct 1340041
>gb|U66060.1| Human germline T-cell receptor beta chain TCRBV13S1, TCRBV6S8A2T, TCRBV5S6A3N2T, TCRBV13S6A2T, TCRBV6S9P, TCRBV5S3A2T, TCRBV13S8P, TCRBV6S3A1N1T, TCRBV5S2, TCRBV6S6A2T, TCRBV5S7P, TCRBV13S4, TCRBV6S2A1N1T, TCRBV5S4A2T, TCRBV6S4A1, TCRBV23S1A2T, TCRBV12S1A1N2, TCRBV21S2A2, TCRBV8S1, TCRBV8S2A1T, TCRBV8S3, TCRBV16S1A1N1, TCRBV24S1A3T, TCRBV25S1A2PT, TCRBV26S1P, TCRBV18S1, TCRBV17S1A1T, TCRBV2S1, TCRBV10S1P genes from bases 257519 to 472940 (section 2 of 3) Length = 215422 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 120363 tcttcccttctcttctcttctct 120341
>gb|AC160979.2| Mus musculus BAC clone RP23-437B11 from chromosome 15, complete sequence Length = 216014 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 159909 tcttcccttctcttctcttctct 159887
>emb|AL928706.6| Mouse DNA sequence from clone RP23-54E16 on chromosome 2, complete sequence Length = 205358 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 43239 tcttcccttctcttctcttctct 43261
>emb|AL807792.6| Zebrafish DNA sequence from clone CH211-247L22, complete sequence Length = 160553 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 64943 tcttcccttctcttctcttctct 64921
>emb|AJ421479.1| Mus musculus X-inactivation center region; segment 2/3 Length = 252150 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Plus Query: 25 ttgctctatcttcccttctcttctcttctct 55 |||||| |||||| ||||||||||||||||| Sbjct: 235591 ttgctccatcttctcttctcttctcttctct 235621
>emb|AL805953.5| Mouse DNA sequence from clone RP23-189N21 on chromosome 2, complete sequence Length = 173345 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 51665 tcttcccttctcttctcttctct 51687
>emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chromosome X, complete sequence Length = 188627 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 58559 tcttcccttctcttctcttctct 58537
>emb|AL669964.18| Mouse DNA sequence from clone RP23-11P22 on chromosome X, complete sequence Length = 229724 Score = 46.1 bits (23), Expect = 0.094 Identities = 29/31 (93%) Strand = Plus / Minus Query: 25 ttgctctatcttcccttctcttctcttctct 55 |||||| |||||| ||||||||||||||||| Sbjct: 46657 ttgctccatcttctcttctcttctcttctct 46627
>emb|AL671988.15| Mouse DNA sequence from clone RP23-165J1 on chromosome X, complete sequence Length = 164068 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 150239 tcttcccttctcttctcttctct 150217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 tcccttctcttctcttctct 55 |||||||||||||||||||| Sbjct: 150055 tcccttctcttctcttctct 150036
>emb|AL606498.17| Mouse DNA sequence from clone RP23-197C15 on chromosome 11, complete sequence Length = 222330 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 137484 tcttcccttctcttctcttctct 137462
>emb|AL731707.12| Mouse DNA sequence from clone RP23-100C5 on chromosome 2, complete sequence Length = 205581 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 193426 tcttcccttctcttctcttctct 193404
>gb|U03115.1|HSTCRBV Human V beta T-cell receptor (TCRBV) gene locus Length = 77743 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctct 55 ||||||||||||||||||||||| Sbjct: 13530 tcttcccttctcttctcttctct 13508
>ref|NM_128568.1| Arabidopsis thaliana ASL5 AT2G30130 (ASL5) mRNA, complete cds Length = 732 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 222 ggtcttcggcgccagcaacgtgagcaagatgctgcaggagct 263 |||||| || ||||||||||| ||||| ||| |||||||||| Sbjct: 236 ggtctttggtgccagcaacgtcagcaaaatgttgcaggagct 277
>ref|NM_180922.1| Arabidopsis thaliana LOB (LATERAL ORGAN BOUNDARIES) AT5G63090 (LOB) transcript variant AT5G63090.2 mRNA, complete cds Length = 1085 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccag 369 ||||||||||| || |||| ||| |||||||| ||||||||| Sbjct: 614 gaccccgtctatggctgcgtcggagccatctcttatctccag 655
>ref|NM_180923.1| Arabidopsis thaliana LOB (LATERAL ORGAN BOUNDARIES) AT5G63090 (LOB) transcript variant AT5G63090.3 mRNA, complete cds Length = 1156 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccag 369 ||||||||||| || |||| ||| |||||||| ||||||||| Sbjct: 685 gaccccgtctatggctgcgtcggagccatctcttatctccag 726
>ref|NM_180921.1| Arabidopsis thaliana LOB (LATERAL ORGAN BOUNDARIES) AT5G63090 (LOB) transcript variant AT5G63090.1 mRNA, complete cds Length = 1026 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccag 369 ||||||||||| || |||| ||| |||||||| ||||||||| Sbjct: 555 gaccccgtctatggctgcgtcggagccatctcttatctccag 596
>ref|NM_125703.3| Arabidopsis thaliana LOB (LATERAL ORGAN BOUNDARIES) AT5G63090 (LOB) transcript variant AT5G63090.4 mRNA, complete cds Length = 1030 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccag 369 ||||||||||| || |||| ||| |||||||| ||||||||| Sbjct: 559 gaccccgtctatggctgcgtcggagccatctcttatctccag 600
>gb|AC152949.1| Mus musculus 10 BAC RP23-184H3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206898 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 200594 cttcccttctcttctcttctct 200615
>gb|AC154789.2| Mus musculus BAC clone RP24-479C22 from chromosome 17, complete sequence Length = 163182 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 152951 cttcccttctcttctcttctct 152972 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 152836 cttcccttctcttctcttctct 152857 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 152561 ctctctcttctcttctcttctcttctct 152588
>gb|AC130671.7| Mus musculus chromosome 15, clone RP24-90K19, complete sequence Length = 205646 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 6307 cttcccttctcttctcttctct 6286
>gb|AC154842.2| Mus musculus BAC clone RP23-55C11 from chromosome 17, complete sequence Length = 252431 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 35583 cttcccttctcttctcttctct 35604 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 35513 cttcccttctcttctcttctct 35534 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 35297 ctctctcttctcttctcttctcttctct 35324
>gb|AC166822.3| Mus musculus BAC clone RP24-117F20 from chromosome 14, complete sequence Length = 186860 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 14752 cttcccttctcttctcttctct 14731
>gb|AC161202.15| Mus musculus chromosome 8, clone RP23-479K12, complete sequence Length = 175459 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 162538 cttcccttctcttctcttctct 162559
>ref|XM_463174.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 44.1 bits (22), Expect = 0.37 Identities = 105/130 (80%), Gaps = 2/130 (1%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgc-cagggactgcgtgtttgcg 174 ||||||||||| | |||||||| ||||||||| ||| | ||||| |||||||| ||| Sbjct: 17 cgccgtgcgcggcgtgcaagctgctgcggcggaagtgcacgcaggg-gtgcgtgttcgcg 75 Query: 175 ccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcc 234 || |||||||||||||| | || | |||||||| ||||||| ||| |||||||| Sbjct: 76 ccctacttcccgccggaccagccggccaagttcgccaacgtgcacaaggtgttcggcgcg 135 Query: 235 agcaacgtga 244 |||||||||| Sbjct: 136 agcaacgtga 145
>gb|AC164587.5| Mus musculus chromosome 5, clone RP24-222H12, complete sequence Length = 176841 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 105573 cttcccttctcttctcttctct 105552
>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence Length = 200891 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 69762 cttcccttctcttctcttctct 69741
>gb|AC121309.10| Mus musculus chromosome 3, clone RP24-303N8, complete sequence Length = 179337 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 173552 cttcccttctcttctcttctct 173573
>gb|AC158792.2| Mus musculus chromosome 3, clone RP23-300L15, complete sequence Length = 205546 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 124389 cttcccttctcttctcttctct 124368
>gb|AC102938.20| Mus musculus chromosome 1, clone RP24-187H3, complete sequence Length = 197114 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 150550 cttcccttctcttctcttctct 150529
>gb|AY184029.1| Drosophila melanogaster clone TTCTC22 centromeric satellite sequence Length = 51 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 14 cttcccttctcttctcttctct 35
>gb|AC005742.1| Mus musculus chromosome 11, BAC clone CT7-111I18 (LBNL M01), complete sequence Length = 159500 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 33495 cttcccttctcttctcttctct 33516
>gb|AC165358.3| Mus musculus BAC clone RP23-122F14 from chromosome 1, complete sequence Length = 223166 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 206996 cttcccttctcttctcttctct 206975
>gb|AC134898.4| Mus musculus BAC clone RP23-478H2 from chromosome 14, complete sequence Length = 213348 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 186551 cttcccttctcttctcttctct 186572
>gb|AC135672.4| Mus musculus BAC clone RP23-449K22 from chromosome 9, complete sequence Length = 162356 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 133964 cttcccttctcttctcttctct 133985
>gb|AC124337.15| Mus musculus chromosome 6, clone RP24-199P17, complete sequence Length = 171534 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 ctatcttcccttctcttctcttctct 55 ||||||||| |||||||||||||||| Sbjct: 26911 ctatcttcctttctcttctcttctct 26936
>gb|AC147231.2| Mus musculus BAC clone RP23-250I21 from chromosome 9, complete sequence Length = 215395 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 8312 cttcccttctcttctcttctct 8291 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttct 53 ||||||||||||||||||||| Sbjct: 196619 tcttcccttctcttctcttct 196599
>gb|AC140460.3| Mus musculus BAC clone RP24-151D4 from chromosome 9, complete sequence Length = 196545 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 24310 cttcccttctcttctcttctct 24331 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 24151 ctctctcttctcttctcttctcttctct 24178
>gb|AC161356.6| Mus musculus chromosome 1, clone wi1-2612I11, complete sequence Length = 38492 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 18865 cttcccttctcttctcttctct 18886
>gb|AC111015.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1131_E09, complete sequence Length = 94399 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 31 tatcttcccttctcttctcttctcta 56 ||||||| |||||||||||||||||| Sbjct: 31937 tatcttctcttctcttctcttctcta 31912
>gb|AC164532.4| Mus musculus chromosome 7, clone RP24-64B10, complete sequence Length = 206573 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 41674 cttcccttctcttctcttctct 41695
>gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302 allele and MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II antigen (HLA-DRB1) gene, partial cds Length = 105171 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 37391 cttcccttctcttctcttctct 37412
>gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302 allele and MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II antigen (HLA-DRB1) gene, partial cds Length = 109441 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 42685 cttcccttctcttctcttctct 42706
>gb|AY663398.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01960 MHC class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030201 allele and MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*030101 allele, complete cds Length = 73220 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 22714 cttcccttctcttctcttctct 22735
>gb|AY663393.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14661 MHC class II antigen (HLA-DQB1) gene and MHC class II antigen (HLA-DQA1) gene, HLA-DQA1-DQA1*0303 allele, complete cds; and MHC class II antigen (HLA-DRB1) gene, partial cds Length = 78546 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 16619 cttcccttctcttctcttctct 16640
>gb|AC159030.2| Pan troglodytes BAC clone CH251-399F13 from chromosome unknown, complete sequence Length = 176914 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctc 54 |||||||||||||||||||||| Sbjct: 67149 tcttcccttctcttctcttctc 67170
>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence Length = 231896 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 72856 cttcccttctcttctcttctct 72835
>gb|AC131717.3| Mus musculus chromosome 12 clone RP23-167A18, complete sequence Length = 190372 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 87824 cttcccttctcttctcttctct 87803 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttc 52 |||||||||||||||||||| Sbjct: 87910 tcttcccttctcttctcttc 87891
>gb|AC140298.3| Mus musculus BAC clone RP24-319I6 from chromosome 18, complete sequence Length = 148703 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 20730 cttcccttctcttctcttctct 20751
>gb|AC123066.4| Mus musculus BAC clone RP23-262I13 from chromosome 19, complete sequence Length = 206333 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 76177 cttcccttctcttctcttctct 76198
>gb|AC145955.3| Gallus gallus chromosome UNK clone CH261-13M13, complete sequence Length = 200102 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctctaag 58 ||||| |||||||||||||||||||| Sbjct: 111186 tcttctcttctcttctcttctctaag 111161
>emb|AL935124.31| Mouse DNA sequence from clone RP23-88C15 on chromosome 2, complete sequence Length = 193805 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 73612 cttcccttctcttctcttctct 73591
>emb|CR382370.13| Zebrafish DNA sequence from clone DKEY-22O12 in linkage group 1, complete sequence Length = 257504 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 30 ctatcttcccttctcttctcttctct 55 |||||||| ||||||||||||||||| Sbjct: 35472 ctatcttctcttctcttctcttctct 35497
>emb|AL670276.13| Mouse DNA sequence from clone RP23-115D21 on chromosome 4, complete sequence Length = 35472 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 15211 cttcccttctcttctcttctct 15190
>gb|AC122442.4| Mus musculus BAC clone RP24-230D14 from chromosome 19, complete sequence Length = 180516 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 174207 cttcccttctcttctcttctct 174186
>gb|AC125120.4| Mus musculus BAC clone RP24-267M16 from chromosome 1, complete sequence Length = 183382 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 172122 cttcccttctcttctcttctct 172143
>gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosome 10, complete sequence Length = 195384 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 14667 cttcccttctcttctcttctct 14646
>gb|AC140424.2| Mus musculus BAC clone RP23-112O8 from chromosome 9, complete sequence Length = 179943 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 49991 cttcccttctcttctcttctct 49970 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 28 ctctatcttcccttctcttctcttctct 55 |||| ||||| ||||||||||||||||| Sbjct: 50150 ctctctcttctcttctcttctcttctct 50123
>gb|AC126798.3| Mus musculus BAC clone RP24-229N7 from chromosome 1, complete sequence Length = 172452 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 42343 cttcccttctcttctcttctct 42364
>gb|AC126256.4| Mus musculus BAC clone RP24-235B15 from chromosome 7, complete sequence Length = 188677 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 tgctctatcttcccttctcttctcttctct 55 |||||| ||||| ||||||||||||||||| Sbjct: 157104 tgctctctcttctcttctcttctcttctct 157133
>gb|AC123026.4| Mus musculus BAC clone RP24-549O22 from chromosome 3, complete sequence Length = 175610 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 26176 cttcccttctcttctcttctct 26197
>gb|AC125456.4| Mus musculus BAC clone RP24-193M20 from chromosome 18, complete sequence Length = 142347 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 86967 cttcccttctcttctcttctct 86988
>gb|AC124568.3| Mus musculus BAC clone RP23-145K4 from 14, complete sequence Length = 222946 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 128638 cttcccttctcttctcttctct 128617
>gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, complete sequence Length = 213229 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 80812 cttcccttctcttctcttctct 80791
>gb|AC123874.4| Mus musculus BAC clone RP23-265M17 from 6, complete sequence Length = 193712 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 30 ctatcttcccttctcttctcttctct 55 ||||||||| |||||||||||||||| Sbjct: 89361 ctatcttcctttctcttctcttctct 89336
>gb|AC124519.2| Mus musculus BAC clone RP23-393I12 from 1, complete sequence Length = 195739 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 167582 cttcccttctcttctcttctct 167603
>gb|AC121953.2| Mus musculus BAC clone RP24-218A20 from 9, complete sequence Length = 139499 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 88268 cttcccttctcttctcttctct 88247
>gb|AC084389.1| Mus musculus BAC clone RP23-247A1 from 1, complete sequence Length = 206497 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 140396 cttcccttctcttctcttctct 140417
>gb|AC102368.6| Mus musculus chromosome 14, clone RP23-220D8, complete sequence Length = 208781 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 88366 cttcccttctcttctcttctct 88345
>gb|AC136972.3| Oryza sativa chromosome 3 BAC OSJNBb0007E22 genomic sequence, complete sequence Length = 184783 Score = 44.1 bits (22), Expect = 0.37 Identities = 105/130 (80%), Gaps = 2/130 (1%) Strand = Plus / Plus Query: 116 cgccgtgcgcgtcatgcaagctcctgcggcggcggtgtgc-cagggactgcgtgtttgcg 174 ||||||||||| | |||||||| ||||||||| ||| | ||||| |||||||| ||| Sbjct: 138382 cgccgtgcgcggcgtgcaagctgctgcggcggaagtgcacgcaggg-gtgcgtgttcgcg 138440 Query: 175 ccttacttcccgccggaggacccccaccggttcgccaccgtgcaccgggtcttcggcgcc 234 || |||||||||||||| | || | |||||||| ||||||| ||| |||||||| Sbjct: 138441 ccctacttcccgccggaccagccggccaagttcgccaacgtgcacaaggtgttcggcgcg 138500 Query: 235 agcaacgtga 244 |||||||||| Sbjct: 138501 agcaacgtga 138510
>gb|AC004926.2| Homo sapiens PAC clone RP5-910H9 from 7, complete sequence Length = 153556 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctc 54 |||||||||||||||||||||| Sbjct: 19853 tcttcccttctcttctcttctc 19874
>gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, complete sequence Length = 232012 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 109836 cttcccttctcttctcttctct 109815
>gb|AC116123.7| Mus musculus chromosome 6, clone RP23-87I4, complete sequence Length = 205411 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 78502 cttcccttctcttctcttctct 78481
>gb|AC110236.8| Mus musculus chromosome 15, clone RP23-104L4, complete sequence Length = 233499 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 132464 cttcccttctcttctcttctct 132443
>gb|AC107232.4| Mus musculus chromosome 15, clone RP23-144B2, complete sequence Length = 204292 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 53984 cttcccttctcttctcttctct 54005
>gb|AC156613.9| Mus musculus chromosome 1, clone RP24-139P17, complete sequence Length = 132714 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 114693 cttcccttctcttctcttctct 114714
>emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on chromosome 22q12, complete sequence Length = 212753 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 37931 cttcccttctcttctcttctct 37952
>emb|Z94161.5|HSN102C10 Human DNA sequence from clone LL22NC03-102C10 on chromosome 22q13 Contains the first exon of the PPARA gene for peroxisome proliferative activated receptor alpha, an EST, GSSs and a putative CpG island, complete sequence Length = 44134 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 28267 cttcccttctcttctcttctct 28288
>emb|BX005030.8| Human DNA sequence from clone RP11-720G6 on chromosome 1 Contains a ribosomal protein S3A (RPS3A) pseudogene, complete sequence Length = 23574 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 21342 cttcccttctcttctcttctct 21321
>emb|BX248406.4| Human DNA sequence from clone DASS-390M22 on chromosome 6, complete sequence Length = 124787 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 30099 cttcccttctcttctcttctct 30078
>emb|AL365187.19| Human DNA sequence from clone RP11-342F23 on chromosome 1 Contains the 5' end of the gene for metalloprotease related protein 1 (MPRP-1) and a CpG island, complete sequence Length = 49963 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 16140 cttcccttctcttctcttctct 16119 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttc 52 |||||||||||||||||||| Sbjct: 16161 tcttcccttctcttctcttc 16142
>emb|AL354726.17| Human DNA sequence from clone RP11-535C21 on chromosome 9 Contains 5' end of HEMGN gene for hemogen, the ANP32B gene for acidic (leucine-rich) nuclear phosphoprotein 32 family, member B and a CpG island, complete sequence Length = 82316 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 32389 cttcccttctcttctcttctct 32368
>gb|AC109666.7| Rattus norvegicus 4 BAC CH230-252C14 (Children's Hospital Oakland Research Institute) complete sequence Length = 214386 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 70386 cttcccttctcttctcttctct 70407
>gb|AC163012.4| Mus musculus chromosome 8, clone RP23-22A17, complete sequence Length = 211779 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 103982 cttcccttctcttctcttctct 104003
>gb|AC153839.10| Mus musculus 6 BAC RP23-93A21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 225351 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctc 54 |||||||||||||||||||||| Sbjct: 9839 tcttcccttctcttctcttctc 9818
>gb|AC153993.23| Mus musculus 6 BAC RP24-568N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188187 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 33 tcttcccttctcttctcttctc 54 |||||||||||||||||||||| Sbjct: 61428 tcttcccttctcttctcttctc 61407
>emb|AL713915.10| Mouse DNA sequence from clone RP23-437C4 on chromosome 11 Contains part of the Odz2 gene for odd Oz/ten-m homolog 2 (Drosophila), complete sequence Length = 201133 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 157713 cttcccttctcttctcttctct 157734
>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10 Length = 90273 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 5784 cttcccttctcttctcttctct 5763
>emb|AL596095.18| Mouse DNA sequence from clone RP23-188H3 on chromosome 11 Contains the 3' end of the Il4 gene for interleukin 4, the Kif3a gene for kinesin family member 3A, a novel gene, the Sept8 gene for septin 8, a ribosomal protein L9 (RPL9) pseudogene, three novel genes (A830006N08) (1300007L22Rik) and six CpG islands, complete sequence Length = 170943 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 116424 cttcccttctcttctcttctct 116445
>emb|CR753846.4| Human DNA sequence from clone DADB-249P12 on chromosome 6, complete sequence Length = 128049 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 15533 cttcccttctcttctcttctct 15512
>emb|CR933859.5| Human DNA sequence from clone DAMC-134I7 on chromosome 6, complete sequence Length = 83682 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 25541 cttcccttctcttctcttctct 25520
>emb|AL663086.6| Mouse DNA sequence from clone RP23-64N1 on chromosome 11, complete sequence Length = 161810 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 145937 cttcccttctcttctcttctct 145916
>emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chromosome 6, complete sequence Length = 110625 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 44205 cttcccttctcttctcttctct 44184
>gb|AF447897.1| Arabidopsis thaliana LOBa (LOB) mRNA, complete cds; alternatively spliced Length = 1026 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccag 369 ||||||||||| || |||| ||| |||||||| ||||||||| Sbjct: 555 gaccccgtctatggctgcgtcggagccatctcttatctccag 596
>emb|AL929157.21| Mouse DNA sequence from clone RP23-94K14 on chromosome 2, complete sequence Length = 127383 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 16749 cttcccttctcttctcttctct 16770
>gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 map 7, complete sequence Length = 220077 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 71098 cttcccttctcttctcttctct 71077
>gb|AC172371.3| Gallus gallus BAC clone CH261-20I24 from chromosome ul, complete sequence Length = 237701 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 95921 cttcccttctcttctcttctct 95900
>gb|AC157099.5| Mus musculus 6 BAC RP24-467O4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173237 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 116145 cttcccttctcttctcttctct 116166
>gb|AC079222.17| Mus musculus chromosome 1, clone RP22-292L24, complete sequence Length = 159700 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 105782 cttcccttctcttctcttctct 105803
>gb|AC165369.3| Gallus gallus BAC clone CH261-58G18 from chromosome ul, complete sequence Length = 208903 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 169857 cttcccttctcttctcttctct 169878
>gb|AC121318.17| Mus musculus chromosome 1, clone RP24-377P1, complete sequence Length = 179884 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 71990 cttcccttctcttctcttctct 72011
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 336625 cttcccttctcttctcttctct 336604
>gb|AC156279.5| Mus musculus 6 BAC RP24-244D20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152395 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 50475 cttcccttctcttctcttctct 50454
>emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on chromosome 6, complete sequence Length = 109326 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 13460 cttcccttctcttctcttctct 13439
>dbj|AK040490.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430103C09 product:unclassifiable, full insert sequence Length = 3452 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 2218 cttcccttctcttctcttctct 2239
>gb|AC160337.2| Mus musculus BAC clone RP23-193N1 from chromosome 9, complete sequence Length = 204712 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 62172 cttcccttctcttctcttctct 62193
>gb|AC155641.8| Mus musculus 10 BAC RP24-121N1 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 195480 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 159064 cttcccttctcttctcttctct 159043
>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 228073 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 72997 cttcccttctcttctcttctct 73018
>gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome 14, complete sequence Length = 220498 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 13621 cttcccttctcttctcttctct 13642
>gb|AC157823.2| Mus musculus BAC clone RP23-382L21 from chromosome 12, complete sequence Length = 203726 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 151078 cttcccttctcttctcttctct 151057
>gb|AC154187.2| Mus musculus BAC clone RP24-444N2 from chromosome 17, complete sequence Length = 224908 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 116076 cttcccttctcttctcttctct 116055
>gb|AC153613.9| Mus musculus 10 BAC RP23-23C9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 214432 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 tgctctatcttcccttctcttctcttctct 55 |||||| ||||| ||||||||||||||||| Sbjct: 121746 tgctctctcttctcttctcttctcttctct 121775
>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence Length = 183268 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 70674 cttcccttctcttctcttctct 70653
>gb|AF463754.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence Length = 12250 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 6929 cttcccttctcttctcttctct 6908
>gb|AY086960.1| Arabidopsis thaliana clone 29970 mRNA, complete sequence Length = 729 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 222 ggtcttcggcgccagcaacgtgagcaagatgctgcaggagct 263 |||||| || ||||||||||| ||||| ||| |||||||||| Sbjct: 236 ggtctttggtgccagcaacgtcagcaaaatgttgcaggagct 277
>gb|AC079130.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446E21, complete sequence Length = 190587 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 105896 cttcccttctcttctcttctct 105875 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 105705 cttcccttctcttctcttctct 105684
>gb|AC092580.3| Homo sapiens BAC clone RP11-16D24 from 2, complete sequence Length = 120492 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 33 tcttcccttctcttctcttctc 54 |||||||||||||||||||||| Sbjct: 28072 tcttcccttctcttctcttctc 28093
>gb|AC134903.4| Mus musculus BAC clone RP23-329A21 from chromosome 5, complete sequence Length = 198368 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 tgctctatcttcccttctcttctcttctct 55 |||||| ||||| ||||||||||||||||| Sbjct: 158319 tgctctctcttctcttctcttctcttctct 158348
>gb|AC108814.22| Mus musculus chromosome 19, clone RP23-235H21, complete sequence Length = 196556 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 162887 cttcccttctcttctcttctct 162908
>emb|BX004983.8| Zebrafish DNA sequence from clone DKEY-7F3, complete sequence Length = 234489 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 26 tgctctatcttcccttctcttctcttctct 55 |||||| ||||| ||||||||||||||||| Sbjct: 35071 tgctctctcttctcttctcttctcttctct 35100
>dbj|AB164306.1| Arabidopsis thaliana ASL5 mRNA for ASYMMETRIC LEAVES2-like gene 5 protein, partial cds Length = 582 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 222 ggtcttcggcgccagcaacgtgagcaagatgctgcaggagct 263 |||||| || ||||||||||| ||||| ||| |||||||||| Sbjct: 126 ggtctttggtgccagcaacgtcagcaaaatgttgcaggagct 167
>dbj|AB164305.1| Arabidopsis thaliana ASL4 mRNA for ASYMMETRIC LEAVES2-like gene 4 protein, partial cds Length = 561 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Plus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccag 369 ||||||||||| || |||| ||| |||||||| ||||||||| Sbjct: 241 gaccccgtctatggctgcgtcggagccatctcttatctccag 282
>emb|AL824713.9| Mouse DNA sequence from clone RP23-191F15 on chromosome X, complete sequence Length = 163119 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 56638 cttcccttctcttctcttctct 56617
>gb|AC102898.15| Mus musculus chromosome 7, clone RP24-321O23, complete sequence Length = 173253 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 57132 cttcccttctcttctcttctct 57111
>dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12 Length = 81662 Score = 44.1 bits (22), Expect = 0.37 Identities = 37/42 (88%) Strand = Plus / Minus Query: 328 gaccccgtctacggatgcgccggcgccatctcctatctccag 369 ||||||||||| || |||| ||| |||||||| ||||||||| Sbjct: 17678 gaccccgtctatggctgcgtcggagccatctcttatctccag 17637
>gb|AC154024.2| Mus musculus 6 BAC RP24-137K15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 173257 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 34 cttcccttctcttctcttctct 55 |||||||||||||||||||||| Sbjct: 96467 cttcccttctcttctcttctct 96446 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,561,804 Number of Sequences: 3902068 Number of extensions: 3561804 Number of successful extensions: 190672 Number of sequences better than 10.0: 973 Number of HSP's better than 10.0 without gapping: 999 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 173292 Number of HSP's gapped (non-prelim): 15840 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
