ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet92h10 |
|---|---|
| Clone Library Name | barley_pub |
>ALDH2_BACSU (P39616) Probable aldehyde dehydrogenase ywdH (EC 1.2.1.3)| Length = 457 Score = 47.8 bits (112), Expect = 1e-05 Identities = 23/80 (28%), Positives = 37/80 (46%) Frame = +1 Query: 145 RATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAYRDEVGVLTKSA 324 +A F G TRP E + AL+ DL K EAY E+G++ + Sbjct: 13 KAYFAAGHTRPLESRLNILRKLKQAVRTHEADLIAALYQDLHKSEQEAYSTEIGIVLEEI 72 Query: 325 NAALREMGKWAAPEKVWAPL 384 + ++ + KW+ P++V PL Sbjct: 73 SFVMKRLRKWSKPKRVKTPL 92
>AL3A1_HUMAN (P30838) Aldehyde dehydrogenase, dimeric NADP-preferring (EC| 1.2.1.5) (ALDH class 3) (ALDHIII) Length = 453 Score = 44.7 bits (104), Expect = 9e-05 Identities = 25/76 (32%), Positives = 37/76 (48%) Frame = +1 Query: 145 RATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAYRDEVGVLTKSA 324 RA F GRTRP ++E+E AL ADL K+ AY +EV + + Sbjct: 12 RAAFSSGRTRPLQFRIQQLEALQRLIQEQEQELVGALAADLHKNEWNAYYEEVVYVLEEI 71 Query: 325 NAALREMGKWAAPEKV 372 ++++ +WAA E V Sbjct: 72 EYMIQKLPEWAADEPV 87
>AL3B1_MOUSE (Q80VQ0) Aldehyde dehydrogenase 3B1 (EC 1.2.1.5) (Aldehyde| dehydrogenase 7) Length = 468 Score = 43.1 bits (100), Expect = 3e-04 Identities = 28/100 (28%), Positives = 42/100 (42%) Frame = +1 Query: 112 LPALQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAY 291 + + + +L +LR F+ GRTR D +++ AL DL K EA Sbjct: 1 MDSFEDKLQQLREAFKEGRTRSAEFRAAQLQGLSHFLRDNKQQLQEALAQDLHKSAFEAE 60 Query: 292 RDEVGVLTKSANAALREMGKWAAPEKVWAPLAAFPASAHV 411 E+ + + ALR + W EKV LA SA + Sbjct: 61 VSEIAISQAEVDLALRNLRSWMKDEKVSKNLATQLDSAFI 100
>AL3B1_RAT (Q5XI42) Aldehyde dehydrogenase 3B1 (EC 1.2.1.5)| Length = 468 Score = 42.4 bits (98), Expect = 4e-04 Identities = 27/100 (27%), Positives = 41/100 (41%) Frame = +1 Query: 112 LPALQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAY 291 + + + +L +LR F GRTR D +++ AL DL K E+ Sbjct: 1 MDSFEDKLQQLREAFNAGRTRSAEFRAAQLQGLSHFLRDNKQQLQEALAQDLHKSAFESE 60 Query: 292 RDEVGVLTKSANAALREMGKWAAPEKVWAPLAAFPASAHV 411 E+ + + ALR + W EKV LA SA + Sbjct: 61 VSEIAISQAEVDLALRNLRSWMKDEKVSKNLATQLDSAFI 100
>AL3A2_RAT (P30839) Fatty aldehyde dehydrogenase (EC 1.2.1.3) (Aldehyde| dehydrogenase, microsomal) (Aldehyde dehydrogenase family 3 member A2) (Aldehyde dehydrogenase 10) Length = 484 Score = 37.7 bits (86), Expect = 0.011 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +1 Query: 121 LQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAYRDE 300 ++R++ LR TF GR+RP ++E++ A+ ADL K AY E Sbjct: 1 MERQVQRLRQTFRSGRSRPLRFRLQQLEALRRMVQEREKDILAAIAADLSKSELNAYSHE 60 Query: 301 V 303 V Sbjct: 61 V 61
>AL3A2_MACFA (Q60HH8) Fatty aldehyde dehydrogenase (EC 1.2.1.3) (Aldehyde| dehydrogenase, microsomal) (Aldehyde dehydrogenase family 3 member A2) (Aldehyde dehydrogenase 10) Length = 485 Score = 37.0 bits (84), Expect = 0.018 Identities = 22/97 (22%), Positives = 39/97 (40%) Frame = +1 Query: 121 LQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAYRDE 300 ++R + +R F GR+RP ++E++ A+ ADL K AY E Sbjct: 1 MEREVQRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILAAIAADLCKSELNAYSQE 60 Query: 301 VGVLTKSANAALREMGKWAAPEKVWAPLAAFPASAHV 411 V + + L + +W + V L A++ Sbjct: 61 VITVLGEIDFMLENLPEWVTAKPVKKNLLTMMDEAYI 97
>AL3B1_HUMAN (P43353) Aldehyde dehydrogenase 3B1 (EC 1.2.1.5) (Aldehyde| dehydrogenase 7) Length = 468 Score = 37.0 bits (84), Expect = 0.018 Identities = 27/93 (29%), Positives = 35/93 (37%) Frame = +1 Query: 133 LGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAYRDEVGVL 312 L LR F GRTRP + ++ AL DL K E+ EV + Sbjct: 8 LRRLREAFHAGRTRPAEFRAAQLQGLGRFLQENKQLLHDALAQDLHKSAFESEVSEVAIS 67 Query: 313 TKSANAALREMGKWAAPEKVWAPLAAFPASAHV 411 ALR + W E+V LA SA + Sbjct: 68 QGEVTLALRNLRAWMKDERVPKNLATQLDSAFI 100
>AL3A1_RAT (P11883) Aldehyde dehydrogenase, dimeric NADP-preferring (EC| 1.2.1.5) (ALDH class 3) (Tumor-associated aldehyde dehydrogenase) (HTC-ALDH) Length = 452 Score = 33.9 bits (76), Expect = 0.15 Identities = 19/76 (25%), Positives = 32/76 (42%) Frame = +1 Query: 145 RATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAYRDEVGVLTKSA 324 R F G+TR + + AL +DLGK+ +Y +EV + + Sbjct: 11 REAFNSGKTRSLQFRIQQLEALQRMINENLKSISGALASDLGKNEWTSYYEEVAHVLEEL 70 Query: 325 NAALREMGKWAAPEKV 372 + ++E+ WA E V Sbjct: 71 DTTIKELPDWAEDEPV 86
>AL3A2_HUMAN (P51648) Fatty aldehyde dehydrogenase (EC 1.2.1.3) (Aldehyde| dehydrogenase, microsomal) (Aldehyde dehydrogenase family 3 member A2) (Aldehyde dehydrogenase 10) Length = 485 Score = 31.6 bits (70), Expect = 0.76 Identities = 18/84 (21%), Positives = 33/84 (39%) Frame = +1 Query: 121 LQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHRAEAYRDE 300 ++ + +R F GR+RP ++E++ A+ ADL K Y E Sbjct: 1 MELEVRRVRQAFLSGRSRPLRFRLQQLEALRRMVQEREKDILTAIAADLCKSEFNVYSQE 60 Query: 301 VGVLTKSANAALREMGKWAAPEKV 372 V + + L + +W + V Sbjct: 61 VITVLGEIDFMLENLPEWVTAKPV 84
>RS13_XANOR (Q5GWV6) 30S ribosomal protein S13| Length = 118 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = +1 Query: 100 AAVELPALQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHR 279 A V LPA + L++ + GRTR D E L A++GK+ Sbjct: 5 AGVNLPAQKHVWVGLQSIYGIGRTRSKKLCESAGVTSTTKIRDLSEPEIERLRAEVGKYV 64 Query: 280 AEA-YRDEVGVLTK 318 E R E+G+ K Sbjct: 65 VEGDLRREIGIAIK 78
>RS13_XANCP (Q9Z3F0) 30S ribosomal protein S13| Length = 118 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = +1 Query: 100 AAVELPALQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHR 279 A V LPA + L++ + GRTR D E L A++GK+ Sbjct: 5 AGVNLPAQKHVWVGLQSIYGIGRTRSKKLCESAGVTSTTKIRDLSEPEIERLRAEVGKYV 64 Query: 280 AEA-YRDEVGVLTK 318 E R E+G+ K Sbjct: 65 VEGDLRREIGIAIK 78
>RS13_XANC8 (Q4URG0) 30S ribosomal protein S13| Length = 118 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = +1 Query: 100 AAVELPALQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHR 279 A V LPA + L++ + GRTR D E L A++GK+ Sbjct: 5 AGVNLPAQKHVWVGLQSIYGIGRTRSKKLCESAGVTSTTKIRDLSEPEIERLRAEVGKYV 64 Query: 280 AEA-YRDEVGVLTK 318 E R E+G+ K Sbjct: 65 VEGDLRREIGIAIK 78
>RS13_XANC5 (Q3BWW2) 30S ribosomal protein S13| Length = 118 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = +1 Query: 100 AAVELPALQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHR 279 A V LPA + L++ + GRTR D E L A++GK+ Sbjct: 5 AGVNLPAQKHVWVGLQSIYGIGRTRSKKLCESAGVTSTTKIRDLSEPEIERLRAEVGKYV 64 Query: 280 AEA-YRDEVGVLTK 318 E R E+G+ K Sbjct: 65 VEGDLRREIGIAIK 78
>RS13_XANAC (Q8NKX3) 30S ribosomal protein S13| Length = 118 Score = 29.6 bits (65), Expect = 2.9 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Frame = +1 Query: 100 AAVELPALQRRLGELRATFEGGRTRPXXXXXXXXXXXXXXXXDKEEEAFRALHADLGKHR 279 A V LPA + L++ + GRTR D E L A++GK+ Sbjct: 5 AGVNLPAQKHVWVGLQSIYGIGRTRSKKLCESAGVTSTTKIRDLSEPEIERLRAEVGKYV 64 Query: 280 AEA-YRDEVGVLTK 318 E R E+G+ K Sbjct: 65 VEGDLRREIGIAIK 78
>KIFC2_HUMAN (Q96AC6) Kinesin-like protein KIFC2| Length = 838 Score = 28.9 bits (63), Expect = 4.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -1 Query: 191 CRHDRGRVLPPSKVARSSPRRRCSAGSSTAAPISST 84 CR R PP+ +AR SPR R +G +A S T Sbjct: 717 CRSPPTRARPPAPLARRSPRGRRISGRQSAPSSSPT 752
>EMSY_MOUSE (Q8BMB0) Protein EMSY| Length = 1264 Score = 28.9 bits (63), Expect = 4.9 Identities = 14/28 (50%), Positives = 24/28 (85%) Frame = -1 Query: 113 SSTAAPISSTLVAIVPMLSASPALLCST 30 SST++PISST VA+ ++S++P+++ ST Sbjct: 304 SSTSSPISST-VAVTTVVSSTPSVVMST 330
>PUR1_CHICK (P28173) Amidophosphoribosyltransferase precursor (EC 2.4.2.14)| (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT) Length = 510 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = -1 Query: 140 SPRRRCSAGSSTAAPISSTLVAIVPMLSASPALL 39 S RRRC + AP+ + LV+ VP SA+PA L Sbjct: 301 SVRRRCGQQLAIEAPVEADLVSTVPE-SATPAAL 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.315 0.128 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,309,252 Number of Sequences: 219361 Number of extensions: 347496 Number of successful extensions: 2019 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2019 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
