ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet92g11 |
|---|---|
| Clone Library Name | barley_pub |
>PSAF_HORVU (P13192) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 235 Score = 151 bits (382), Expect = 6e-37 Identities = 79/103 (76%), Positives = 80/103 (77%) Frame = +2 Query: 122 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXX 301 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTF Sbjct: 17 KPRLSRPPARLSVSCSASSGDNNNSTATPSLSASIKTFSAALALSSVLLSSAATSPPPAA 76 Query: 302 XDIAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 DIAGLTPCKESKAFAKREKQSVKKLNSSL+KYAPDSAPALAI Sbjct: 77 ADIAGLTPCKESKAFAKREKQSVKKLNSSLKKYAPDSAPALAI 119
>PSAF_FLATR (P46486) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 232 Score = 76.3 bits (186), Expect = 3e-14 Identities = 45/93 (48%), Positives = 52/93 (55%), Gaps = 1/93 (1%) Frame = +2 Query: 155 SVSCSASSGDN-NNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 331 S+ CS S+ + NN+ SL A DI+GLTPCK Sbjct: 33 SIVCSGSTDEKINNADGKSSLKA-----LSAALALSSILVSSTVPALPASADISGLTPCK 87 Query: 332 ESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 ESK FAKREKQS+KKL SSL+ YAPDSAPALAI Sbjct: 88 ESKQFAKREKQSLKKLESSLKLYAPDSAPALAI 120
>PSAF_SPIOL (P12355) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) Length = 231 Score = 69.7 bits (169), Expect = 3e-12 Identities = 34/42 (80%), Positives = 38/42 (90%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 DIAGLTPCKESK FAKREKQ++KKL +SL+ YA DSAPALAI Sbjct: 78 DIAGLTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAI 119
>PSAF_CHLRE (P12356) Photosystem I reaction center subunit III, chloroplast| precursor (Light-harvesting complex I 17 kDa protein) (PSI-F) (P21 protein) Length = 227 Score = 57.0 bits (136), Expect = 2e-08 Identities = 34/93 (36%), Positives = 46/93 (49%) Frame = +2 Query: 152 LSVSCSASSGDNNNSTATPSLSASIKTFXXXXXXXXXXXXXXXXXXXXXXXDIAGLTPCK 331 L V+C A + + T +L+AS DIAGLTPC Sbjct: 24 LRVACQAQKNETASKVGT-ALAAS-----------ALAAAVSLSAPSAAMADIAGLTPCS 71 Query: 332 ESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 ESKA+AK EK+ +K L L++Y DSAPA+A+ Sbjct: 72 ESKAYAKLEKKELKTLEKRLKQYEADSAPAVAL 104
>PSAF_GUITH (O78457) Photosystem I reaction center subunit III (PSI-F)| Length = 183 Score = 52.0 bits (123), Expect = 6e-07 Identities = 24/42 (57%), Positives = 29/42 (69%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 D+AGL PCK SK F +R SVKKL S L KY P++ P LA+ Sbjct: 23 DVAGLVPCKNSKEFQRRLDSSVKKLESRLSKYEPNTPPYLAL 64
>PSAF_ODOSI (P49483) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 48.9 bits (115), Expect = 5e-06 Identities = 25/42 (59%), Positives = 27/42 (64%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 DI GLT C ES AF KR K SVKKL + KY S PALA+ Sbjct: 25 DIGGLTKCSESPAFEKRLKASVKKLEQRMGKYEAGSPPALAL 66
>PSAF_PORPU (P51193) Photosystem I reaction center subunit III (PSI-F)| Length = 185 Score = 48.5 bits (114), Expect = 7e-06 Identities = 23/42 (54%), Positives = 30/42 (71%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 ++AGL PCK+S AF KR SVKKL + L KY ++ PALA+ Sbjct: 25 EVAGLIPCKDSAAFNKRMVNSVKKLQARLAKYDANTPPALAL 66
>PSAF_CYAPA (P48115) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 186 Score = 48.1 bits (113), Expect = 9e-06 Identities = 21/42 (50%), Positives = 30/42 (71%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSAPALAI 430 D+AGL PC +S AF +R K + ++L + L+KY P SAPA A+ Sbjct: 26 DVAGLIPCSQSDAFERRLKNTTQRLENRLKKYEPGSAPAEAL 67
>PSAF_CUCSA (P42048) Photosystem I reaction center subunit III (Photosystem I| 18.5 kDa protein) (PSI-F) (PS I subunit 7) (Fragment) Length = 26 Score = 42.4 bits (98), Expect = 5e-04 Identities = 19/25 (76%), Positives = 20/25 (80%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSVKKL 379 DI+GLTPCKESK F KREKQ K L Sbjct: 1 DISGLTPCKESKQFXKREKQQXKXL 25
>PSAF_PEA (P20119) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 38.9 bits (89), Expect = 0.005 Identities = 17/19 (89%), Positives = 18/19 (94%) Frame = +2 Query: 308 IAGLTPCKESKAFAKREKQ 364 I+GLTPCKESK FAKREKQ Sbjct: 2 ISGLTPCKESKQFAKREKQ 20
>PSAF_MAIZE (P13193) Photosystem I reaction center subunit III| (Light-harvesting complex I 17 kDa protein) (PSI-F) (Fragment) Length = 20 Score = 33.1 bits (74), Expect = 0.29 Identities = 16/18 (88%), Positives = 16/18 (88%) Frame = +2 Query: 308 IAGLTPCKESKAFAKREK 361 IAGLTP KESKAFAK EK Sbjct: 2 IAGLTPPKESKAFAKXEK 19
>PSAF_SYNEN (P0A402) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 31.6 bits (70), Expect = 0.85 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSV 370 D+AGL PCK+S AF KR +V Sbjct: 24 DVAGLVPCKDSPAFQKRAAAAV 45
>PSAF_SYNEL (P0A401) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 164 Score = 31.6 bits (70), Expect = 0.85 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSV 370 D+AGL PCK+S AF KR +V Sbjct: 24 DVAGLVPCKDSPAFQKRAAAAV 45
>PSAF_CYACA (Q9TLW6) Photosystem I reaction center subunit III (PSI-F)| Length = 187 Score = 29.3 bits (64), Expect = 4.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 317 LTPCKESKAFAKREKQSVKKLNSSLQKYAPDS 412 LTPC+ S F R ++KKL + L Y +S Sbjct: 31 LTPCENSAQFQARLNNNIKKLENKLTYYKQNS 62
>MXI1_RAT (O09015) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +2 Query: 125 PRL--SRPPARLSVSCSASSGDNNNSTATPS 211 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>MXI1_MOUSE (P50540) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 29.3 bits (64), Expect = 4.2 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +2 Query: 125 PRL--SRPPARLSVSCSASSGDNNNSTATPS 211 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGSSNTSTANRS 70
>MXI1_HUMAN (P50539) MAX-interacting protein 1 (MXI1 protein)| Length = 228 Score = 28.9 bits (63), Expect = 5.5 Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 2/31 (6%) Frame = +2 Query: 125 PRL--SRPPARLSVSCSASSGDNNNSTATPS 211 PRL S+PP RLS + SSG +N STA S Sbjct: 40 PRLQHSKPPRRLSRAQKHSSGTSNTSTANRS 70
>PSAF_SYNP6 (P31083) Photosystem I reaction center subunit III precursor| (PSI-F) Length = 159 Score = 28.9 bits (63), Expect = 5.5 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKR-EKQSVKKLNSSLQKYA 403 D+AGLTPC ES F +R E + + + + Y+ Sbjct: 24 DVAGLTPCSESPRFIQRAEAAATPQAKARFENYS 57
>AMPH_ECOLI (P0AD70) Penicillin-binding protein ampH| Length = 385 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +2 Query: 308 IAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSA 415 IA LT S+ K Q KLN L KYAP A Sbjct: 85 IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120
>AMPH_ECO57 (P0AD71) Penicillin-binding protein ampH| Length = 385 Score = 28.9 bits (63), Expect = 5.5 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = +2 Query: 308 IAGLTPCKESKAFAKREKQSVKKLNSSLQKYAPDSA 415 IA LT S+ K Q KLN L KYAP A Sbjct: 85 IASLTKLMTSEMLVKLLDQGTVKLNDPLSKYAPPGA 120
>I11RA_PONPY (Q5RF19) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 128 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 232 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142
>I11RA_HUMAN (Q14626) Interleukin-11 receptor alpha chain precursor| (IL-11R-alpha) (IL-11RA) Length = 422 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 128 RLSRPPARLSVSCSASSGDNNNSTATPSLSASIKT 232 +L PPAR VSC A+ +N + T +PS + + T Sbjct: 108 QLGYPPARPVVSCQAADYENFSCTWSPSQISGLPT 142
>PSAF_SYNVU (P23078) Photosystem I reaction center subunit III (PSI-F)| (Fragment) Length = 27 Score = 28.1 bits (61), Expect = 9.4 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = +2 Query: 305 DIAGLTPCKESKAFAKREKQSV 370 D+AGL P K+S AF KR +V Sbjct: 1 DVAGLVPAKDSPAFQKRAAAAV 22 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.313 0.132 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,063,906 Number of Sequences: 219361 Number of extensions: 231126 Number of successful extensions: 932 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 925 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 932 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
