Clone Information

BLAST Search Result

Clone Name	baet92g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h...	33	0.24
2	MYOB_DICDI (P34092) Myosin IB heavy chain	33	0.31
3	TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DN...	32	0.68
4	CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (C...	32	0.68
5	VP6_AHSV6 (Q64913) VP6 protein (Minor inner core protein VP6)	32	0.89
6	CAPS1_HUMAN (Q9ULU8) Calcium-dependent secretion activator 1 (Ca...	31	1.2
7	CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (C...	31	1.2
8	RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h...	31	1.2
9	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	31	1.2
10	VP6_AHSV3 (Q64909) VP6 protein (Minor inner core protein VP6)	31	1.5
11	GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein	30	2.0
12	NHR85_CAEEL (Q9XUK7) Nuclear hormone receptor family member nhr-85	30	2.6
13	BETA3_MESAU (O09029) Protein BETA3	30	3.4
14	NOLA1_XENTR (Q5RJV1) H/ACA ribonucleoprotein complex subunit 1-l...	30	3.4
15	RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1	29	4.4
16	GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu...	29	4.4
17	FXR1_DROME (Q9NFU0) Fragile X mental retardation syndrome-relate...	29	4.4
18	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	29	4.4
19	HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like	29	4.4
20	NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (...	29	5.8
21	SHOX2_HUMAN (O60902) Short stature homeobox protein 2 (Paired-re...	29	5.8
22	NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex su...	29	5.8
23	PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS5...	29	5.8
24	NOLA1_DROME (Q7KVQ0) H/ACA ribonucleoprotein complex subunit 1-l...	29	5.8
25	KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C...	29	5.8
26	YS89_CAEEL (Q09624) Hypothetical protein ZK945.9	29	5.8
27	PURL_GLUOX (Q5FNL0) Phosphoribosylformylglycinamidine synthase I...	29	5.8
28	GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2	29	5.8
29	COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemph...	28	7.6
30	VG38_BPAR1 (Q9G0B4) Receptor recognizing protein (Protein Gp38)	28	7.6
31	FBN2_MOUSE (Q61555) Fibrillin-2 precursor	28	7.6
32	Y1243_ZYMMO (P30794) Hypothetical protein ZMO1243	28	7.6
33	ABL_DROME (P00522) Tyrosine-protein kinase Abl (EC 2.7.10.2) (Ab...	28	7.6
34	PPME1_EMENI (Q5BGN7) Protein phosphatase methylesterase 1 (EC 3....	28	7.6
35	IF2_LEIXX (Q6AG49) Translation initiation factor IF-2	28	7.6
36	ASF1_HELAN (P22357) Anther-specific protein SF18 precursor (Frag...	28	9.9
37	PPME1_ASPFU (Q4WKB2) Protein phosphatase methylesterase 1 (EC 3....	28	9.9
38	ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (...	28	9.9
39	CECR6_HUMAN (Q9BXQ6) Cat eye syndrome critical region protein 6	28	9.9
40	ZHANG_MOUSE (Q91ZR3) Host cell factor-binding transcription fact...	28	9.9
41	NOLA1_CAEEL (Q9TYK1) Putative H/ACA ribonucleoprotein complex su...	28	9.9
42	TC753_ARATH (Q9STE8) Protein TOC75-3, chloroplast precursor (75 ...	28	9.9
43	SMAD7_RAT (O88406) Mothers against decapentaplegic homolog 7 (SM...	28	9.9
44	ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn...	28	9.9
45	ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (...	28	9.9
46	POLG_SUMVS (P25242) Genome polyprotein [Contains: Nuclear inclus...	28	9.9
47	Y930_LEIXX (Q6AFM6) UPF0182 protein Lxx09300	28	9.9
48	SRF_DROME (Q24535) Serum response factor homolog (dSRF) (Protein...	28	9.9
49	PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacema...	28	9.9
50	M3K1_HUMAN (Q13233) Mitogen-activated protein kinase kinase kina...	28	9.9
51	ACN2_ACAGO (Q8I6R7) Acanthoscurrin-2 precursor (Fragment)	28	9.9

>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +1

Query: 37  HTI----CPVPSHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGV 204
           HTI    C V   L    M T+ A      G +N + R  + GGGDG  G   G GG   
Sbjct: 181 HTINLHNCEVKKALSKQEMQTASAQRGRGGGGSNFMGRGGNYGGGDGGGGGNFGRGGGFG 240

Query: 205 CREGADGG 228
            R G  GG
Sbjct: 241 NRGGYGGG 248

to top

>MYOB_DICDI (P34092) Myosin IB heavy chain|
          Length = 1111

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 112  QGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADG 225
            QG+   +P+P  +GG  G RG  +G G  G    GA G
Sbjct: 1003 QGAGRQLPQPTQQGGAPGGRGAPMGRGAPGGGPAGAGG 1040

to top

>TOP3A_DROME (Q9NG98) DNA topoisomerase 3-alpha (EC 5.99.1.2) (DNA topoisomerase|
           III alpha)
          Length = 1250

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGG G  G   G GGSG    G  GG LG
Sbjct: 805 GGGSGGWGSGTGGGGSGGWGSGTGGGGLG 833

to top

>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated|
           factor 3)
          Length = 751

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 49  PVPSHLQLSPM*TSDA-SPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADG 225
           P PSH   +P   + A +PP   G +N  PRP       G  G   G+GGS        G
Sbjct: 359 PAPSHNSGTPAPYAQAVAPPNASGPSNAQPRPPSAQPSGGSGG---GSGGSSSNSNSGTG 415

Query: 226 GRLG 237
           G  G
Sbjct: 416 GGAG 419

to top

>VP6_AHSV6 (Q64913) VP6 protein (Minor inner core protein VP6)|
          Length = 369

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCR-EGADGGRLG 237
           GGGDG  G   G GG GV R +   GGR G
Sbjct: 93  GGGDGSAGARTGIGGGGVGRVDSRSGGRGG 122

to top

>CAPS1_HUMAN (Q9ULU8) Calcium-dependent secretion activator 1 (Calcium-dependent|
           activator protein for secretion 1) (CAPS-1)
          Length = 1353

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 24/61 (39%), Positives = 27/61 (44%)
 Frame = +1

Query: 55  PSHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGGRL 234
           PS  +LSP  TS+ S     GS  L       GGG    G  VGAGG G     + GG  
Sbjct: 28  PSGARLSPSRTSEGSA----GSAGL-------GGGGAGAGAGVGAGGGGGSGASSGGGAG 76

Query: 235 G 237
           G
Sbjct: 77  G 77

to top

>CNOT3_HUMAN (O75175) CCR4-NOT transcription complex subunit 3 (CCR4-associated|
           factor 3)
          Length = 753

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 49  PVPSHLQLSPM*TSDA-SPPLIQGSNNLVPRP--VDRGGGDGQRGEAVGAGGSGVCREGA 219
           P PSH   +P   + A +PP   G +   PRP  V   GG G  G + G G S      A
Sbjct: 359 PAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGG--GGSGGGGSSSSSNSSA 416

Query: 220 DGG 228
            GG
Sbjct: 417 GGG 419

to top

>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGG G+ G   G GG G    G DGG  G
Sbjct: 245 GGGGGRGGGGYGGGGDGYNGFGGDGGNYG 273



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
 Frame = +1

Query: 37  HTI----CPVPSHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGV 204
           HTI    C V   L    M T+ A      G +N + R  + GGGDG  G     GG G 
Sbjct: 181 HTINGHNCEVKKALSKQEMQTASAQRGRGGGGSNFMGRGGNYGGGDG--GNFGRGGGGGF 238

Query: 205 CREGADGG 228
              G  GG
Sbjct: 239 GNRGGYGG 246

to top

>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 100 PPLIQGSNNLVPRPVDRGGGD-----GQRGEAVGAGGSGVCREGADGGR 231
           PP   GS  L   P +RGG       G++GE  GAG  GV   G DG R
Sbjct: 714 PPGASGSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGV--PGKDGPR 760

to top

>VP6_AHSV3 (Q64909) VP6 protein (Minor inner core protein VP6)|
          Length = 369

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 16/30 (53%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCR-EGADGGRLG 237
           GGGDG  G   G GG GV R +   GGR G
Sbjct: 93  GGGDGGAGARTGIGGGGVGRVDSRSGGRGG 122

to top

>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein|
          Length = 157

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGG 228
           GGG G R E  G GG G  REG  GG
Sbjct: 104 GGGYGGRREGGGGGGYGGRREGGGGG 129



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGG 228
           GGG G  G   G GG G  REG DGG
Sbjct: 125 GGGGGYGG---GGGGYGGRREGGDGG 147

to top

>NHR85_CAEEL (Q9XUK7) Nuclear hormone receptor family member nhr-85|
          Length = 514

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 16  TASASACHTICPVPSHLQLSPM*TSDASPPLIQGSNNLVPRP 141
           T+ +  CH    + ++LQ  P+ TS +SPP    S+ L P P
Sbjct: 5   TSGSLPCHLPLSLLTNLQTPPIDTSFSSPPATSSSSLLSPSP 46

to top

>BETA3_MESAU (O09029) Protein BETA3|
          Length = 367

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +1

Query: 55  PSHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGGRL 234
           P+    SP+   + + P  +G+  L+P P   GGG G  G   G GG GV   G   G  
Sbjct: 56  PASSSSSPLGCFEPADP--EGAGLLLPPP---GGGGGAGGGGGGGGGGGVSVPGLLVGSA 110

Query: 235 G 237
           G
Sbjct: 111 G 111

to top

>NOLA1_XENTR (Q5RJV1) H/ACA ribonucleoprotein complex subunit 1-like protein|
          Length = 218

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/33 (51%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 133 PRPVDRGGG-DGQRGEAVGAGGSGVCREGADGG 228
           PR   RGGG  G RG   G GG G  R G  GG
Sbjct: 161 PRGGGRGGGRGGGRGRGGGRGGGGGFRGGRGGG 193

to top

>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1|
          Length = 1906

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 180  CFSTLTISSSSVYRPRHEVVAPLNERRTGVAGSHG 76
            CF T   +S    +P    +AP    R G AG+HG
Sbjct: 1423 CFKTEAFTSPEALQPGGTALAPKKRSRKGRAGAHG 1457

to top

>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 109 IQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGG 228
           + G N  V +   RGGG G  G   G GG G      DGG
Sbjct: 74  LDGRNITVNQAQSRGGGGGGGGYGGGRGGGGYGGGRRDGG 113

to top

>FXR1_DROME (Q9NFU0) Fragile X mental retardation syndrome-related protein 1|
           (dFMR1) (dfxr)
          Length = 684

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +1

Query: 148 RGGGDGQRGEAVGAGGSG 201
           RGGG GQRG   G GG G
Sbjct: 418 RGGGGGQRGRVRGRGGGG 435

to top

>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = +1

Query: 100 PPLIQGSNNLVPRPVDRGGGD-----GQRGEAVGAGGSGVCREGADGGR 231
           PP   G   L   P +RGG       G++GE  GAG  GV   G DG R
Sbjct: 714 PPGTSGPPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGV--PGKDGPR 760

to top

>HNRLL_MOUSE (Q921F4) Heterogeneous nuclear ribonucleoprotein L-like|
          Length = 591

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGGDG+ GE    G  G   EG  GG  G
Sbjct: 71  GGGDGEEGEGGEEGDEGDGDEGGSGGDEG 99



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 145 DRGGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           D GGGDG  G+  G+GG G   EG +GG  G
Sbjct: 56  DSGGGDGGDGDG-GSGGGGDGEEG-EGGEEG 84

to top

>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1) (snoRNP protein GAR1)
          Length = 217

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 6/42 (14%)
 Frame = +1

Query: 130 VPRPVD-----RGGGDGQRGEAVGAGGSGVCREGA-DGGRLG 237
           +PRP       RGGG G RG   G GG G  R G   GGR G
Sbjct: 158 LPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199

to top

>SHOX2_HUMAN (O60902) Short stature homeobox protein 2 (Paired-related homeobox|
           protein SHOT) (Homeobox protein Og12X)
          Length = 331

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGG G  G   G GG GV   GA GG  G
Sbjct: 61  GGGGGGGGGGGGGGGGGVGGGGAGGGAGG 89



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGR 231
           GGG G  G  VG GG+G    GA GGR
Sbjct: 68  GGGGGGGGGGVGGGGAG---GGAGGGR 91

to top

>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like|
           protein 1
          Length = 202

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/45 (37%), Positives = 20/45 (44%)
 Frame = +1

Query: 103 PLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           P ++G      R    GGG G+ G   G  G G  R G  GGR G
Sbjct: 3   PPMRGGGGFRGRGGRDGGGGGRFGGGGGRFGGGGGRFGGGGGRFG 47

to top

>PG54_MYCTU (O53553) Hypothetical PE-PGRS family protein PE_PGRS54 precursor|
          Length = 1901

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +1

Query: 115 GSNNLVPRPVDRGGGDGQRGEAVGAGGS-GVCREGADGGRLG 237
           G++N  P  +   GG G  G A GAGG+ G    G  GG +G
Sbjct: 629 GADN--PTGIGGAGGTGGTGGAAGAGGAGGAIGTGGTGGAVG 668

to top

>NOLA1_DROME (Q7KVQ0) H/ACA ribonucleoprotein complex subunit 1-like protein|
           (GCR 101 snRNP)
          Length = 237

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGG G RG   G GG G    G  GGR G
Sbjct: 9   GGGGGGRGFGGGGGGGGRGFGGGGGGRGG 37

to top

>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4|
           (Voltage-gated potassium channel subunit Kv3.4)
          Length = 628

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 136 RPVDRGGGDGQRGEAVGAGGSGVC 207
           RP   GGG G  G + G GG G C
Sbjct: 73  RPESDGGGAGSSGSSGGGGGGGGC 96

to top

>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9|
          Length = 3178

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 136  RPVDRGGGDGQRGEAVGAGGSGVCREGADGG 228
            R    G G GQ     GAGGSG    G+  G
Sbjct: 1136 RSTTSGSGSGQSSTGSGAGGSGTTASGSGSG 1166

to top

>PURL_GLUOX (Q5FNL0) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 734

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 115 GSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGGRL 234
           G+  +V   V+R  GD  R + +GAG    C + ADGG L
Sbjct: 598 GAPPVVDLAVERRNGDFVRSQ-IGAGAVAACHDIADGGLL 636

to top

>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 109 IQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGG 228
           + G N  V +   RGGG G  G   G GG G    G  GG
Sbjct: 74  LDGRNITVNQAQSRGGGGGGGGYGGGGGGYGGREGGGYGG 113

to top

>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1470

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = +1

Query: 145 DRGGGDGQRGEAVGAGGSGVCREGADGG 228
           DRGGG G RG+  GAGG G    GA GG
Sbjct: 429 DRGGGGG-RGKGGGAGGGG-GGGGASGG 454

to top

>VG38_BPAR1 (Q9G0B4) Receptor recognizing protein (Protein Gp38)|
          Length = 259

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 154 GGDGQRGEAVGAGGSGVCREGADGGRL 234
           GG+G    A+GA   GVC +   GGRL
Sbjct: 115 GGNGWAACAIGASDGGVCIQNDIGGRL 141

to top

>FBN2_MOUSE (Q61555) Fibrillin-2 precursor|
          Length = 2907

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +1

Query: 115 GSNNLVPRPVDRGGGDGQRGEAVGAGGSG 201
           G    +P P D G   G  G  VGAGG G
Sbjct: 447 GGTGFLPIPGDNGFSPGVGGAGVGAGGQG 475

to top

>Y1243_ZYMMO (P30794) Hypothetical protein ZMO1243|
          Length = 265

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGG G  G   G GGSG+   G  GG  G
Sbjct: 150 GGGFGGGGVGWGGGGSGISIGGGGGGGRG 178

to top

>ABL_DROME (P00522) Tyrosine-protein kinase Abl (EC 2.7.10.2) (Abelson|
           protein) (D-ash)
          Length = 1620

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 58  SHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGG 228
           S + LS    +  SP  I  S+ +   P+  GGG   RG  + +  SGV      GG
Sbjct: 23  SCIGLSSSPVASVSPHCISSSSGVSSAPL--GGGSTLRGSRIKSSSSGVASGSGSGG 77

to top

>PPME1_EMENI (Q5BGN7) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 407

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 2   TQSRTLHLHLHATPSVPSLAIYSSLPCEPATP 97
           T+SRT+     A  SVPSL  +  +P +P+ P
Sbjct: 246 TRSRTIRNRTSARVSVPSLLYHEDVPKDPSKP 277

to top

>IF2_LEIXX (Q6AG49) Translation initiation factor IF-2|
          Length = 916

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/35 (48%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +1

Query: 136 RPVDRGGGDG---QRGEAVGAGGSGVCREGADGGR 231
           RP   GGG G   QR    GAGG    R G  GGR
Sbjct: 232 RPGSAGGGAGGGLQRPGGAGAGGFSGPRTGGGGGR 266

to top

>ASF1_HELAN (P22357) Anther-specific protein SF18 precursor (Fragment)|
          Length = 161

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 14/57 (24%)
 Frame = +1

Query: 100 PPLIQGSNNLVPRPVDRG--------------GGDGQRGEAVGAGGSGVCREGADGG 228
           PP   G+    P P  +G              GGDG  G A  AGG      G DGG
Sbjct: 74  PPGAPGTPGTPPAPPGKGEGDAPHPPPTPSPPGGDGGSGPAPPAGGGSPPPAGGDGG 130

to top

>PPME1_ASPFU (Q4WKB2) Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PME-1)|
          Length = 420

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 2   TQSRTLHLHLHATPSVPSLAIYSSLPCEPATP 97
           T+SRT+     A  SVPSL      P +PA P
Sbjct: 258 TRSRTIRNRASARVSVPSLLYKEETPSDPAKP 289

to top

>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = +1

Query: 37  HTI----CPVPSHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGV 204
           HTI    C V   L    M ++ +      GS N + R  + GGG G  G     GG G 
Sbjct: 189 HTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248

Query: 205 CREGADGGR 231
              G  G R
Sbjct: 249 YGGGGGGSR 257

to top

>CECR6_HUMAN (Q9BXQ6) Cat eye syndrome critical region protein 6|
          Length = 578

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +1

Query: 25  ASACHTICPVPSHLQLSPM*TSDASPPLIQGS-NNLVPRPVDRGGGDGQRGEAVGAGGSG 201
           +SA  +  P P+  +L P+     S    +GS ++       RGGG G+RG   G GGS 
Sbjct: 12  SSASGSFPPPPAAARLQPLFLRGGSFRGRRGSGDSSTSTSTSRGGGGGRRG---GGGGSP 68

Query: 202 VCREGAD 222
               GA+
Sbjct: 69  SSSTGAE 75

to top

>ZHANG_MOUSE (Q91ZR3) Host cell factor-binding transcription factor Zhangfei|
           (HCF-binding transcription factor Zhangfei) (Tyrosine
           kinase-associated leucine zipper protein LAZip)
          Length = 273

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 145 DRGGGDGQRGEAVGAGGSG 201
           DRGGG+ +R ++ GAGG G
Sbjct: 99  DRGGGEKRRRKSPGAGGGG 117

to top

>NOLA1_CAEEL (Q9TYK1) Putative H/ACA ribonucleoprotein complex subunit 1-like|
           protein
          Length = 244

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 145 DRGGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           DRGG  G RG   G  G G  +   DGG  G
Sbjct: 204 DRGGFRGGRGGDFGGRGRGDFKRSYDGGSFG 234

to top

>TC753_ARATH (Q9STE8) Protein TOC75-3, chloroplast precursor (75 kDa translocon|
           at the outer-envelope-membrane of chloroplasts 3)
           (AtTOC75-III)
          Length = 818

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGGDG  G   G GG G   +G DGG  G
Sbjct: 105 GGGDGNFGGFGGGGGGG---DGNDGGFWG 130

to top

>SMAD7_RAT (O88406) Mothers against decapentaplegic homolog 7 (SMAD 7)|
           (Mothers against DPP homolog 7) (Smad7)
          Length = 426

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGR 231
           GG D + G   G GG G+  EGA  GR
Sbjct: 20  GGEDEEEGVGGGGGGGGLRGEGATDGR 46

to top

>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = +1

Query: 37  HTI----CPVPSHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGV 204
           HTI    C V   L    M ++ +      GS N + R  + GGG G  G     GG G 
Sbjct: 189 HTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248

Query: 205 CREGADGGR 231
              G  G R
Sbjct: 249 YGGGGGGSR 257

to top

>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
 Frame = +1

Query: 37  HTI----CPVPSHLQLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGV 204
           HTI    C V   L    M ++ +      GS N + R  + GGG G  G     GG G 
Sbjct: 189 HTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGG 248

Query: 205 CREGADGGR 231
              G  G R
Sbjct: 249 YGGGGGGSR 257

to top

>POLG_SUMVS (P25242) Genome polyprotein [Contains: Nuclear inclusion protein B|
           (NI-B) (NIB) (RNA-directed RNA polymerase) (EC
           2.7.7.48); Coat protein (CP)] (Fragment)
          Length = 365

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 94  ASPPLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSG 201
           A PP  QGS       + +GG  G  G   GAGG+G
Sbjct: 91  AQPPTTQGSQ------LPQGGATGGGGAQTGAGGTG 120

to top

>Y930_LEIXX (Q6AFM6) UPF0182 protein Lxx09300|
          Length = 987

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = +1

Query: 115  GSNNLVPRPVDRGGGD-GQRGEAVGAGGSGVCREGADGGRLG 237
            G NN+   P   GGG  G  G + G G SG     A G   G
Sbjct: 888  GDNNVPATPGGSGGGSSGDAGSSAGGGSSGGGGSSAGGSSSG 929

to top

>SRF_DROME (Q24535) Serum response factor homolog (dSRF) (Protein blistered)|
          Length = 449

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 20/40 (50%), Positives = 22/40 (55%)
 Frame = +1

Query: 67  QLSPM*TSDASPPLIQGSNNLVPRPVDRGGGDGQRGEAVG 186
           +L PM TS+A   LIQ   N  P P   GGGD QR  A G
Sbjct: 225 KLQPMITSEAGKQLIQTCLN-SPDPPSVGGGD-QRMSATG 262

to top

>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein|
            Rigui) (mPER) (M-Rigui)
          Length = 1291

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 103  PLIQGSNNLVPRPVDRGGGDGQRGEAVGAGGSGVCREGADGG 228
            PL    + L   P++ GGG+G        GG GV   G DGG
Sbjct: 1217 PLFSELDGLGLEPMEEGGGEG--------GGCGVGGGGGDGG 1250

to top

>M3K1_HUMAN (Q13233) Mitogen-activated protein kinase kinase kinase 1 (EC|
           2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1)
           (MEKK 1) (Fragment)
          Length = 1495

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 133 PRPVDRGGGDGQRGEAVGAGGSGVCREGADGGR 231
           P P   GGG   +  +  A  +G+ RE   GGR
Sbjct: 1   PSPEAGGGGGALKASSARAAAAGLLREAGSGGR 33

to top

>ACN2_ACAGO (Q8I6R7) Acanthoscurrin-2 precursor (Fragment)|
          Length = 131

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +1

Query: 151 GGGDGQRGEAVGAGGSGVCREGADGGRLG 237
           GGG G  G  +G GG G  R G  GG  G
Sbjct: 89  GGGKGLGGGGLGGGGLGGGRGGYGGGGYG 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,644,292
Number of Sequences: 219361
Number of extensions: 812268
Number of successful extensions: 5484
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 3375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5066
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result