ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet92e09 |
|---|---|
| Clone Library Name | barley_pub |
>KR103_HUMAN (P60369) Keratin-associated protein 10-3 (Keratin-associated| protein 10.3) (High sulfur keratin-associated protein 10.3) (Keratin-associated protein 18-3) (Keratin-associated protein 18.3) Length = 221 Score = 32.7 bits (73), Expect = 0.42 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 348 PPTSLPHACCP*PCF---CTSASSLHSSVREAVCCTAPLYADCFS 223 PP P C P PC CT S + S +A C +P + C S Sbjct: 29 PPCCAPSCCAPAPCLTLVCTPVSCVSSPCCQAACEPSPCQSGCTS 73
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 32.3 bits (72), Expect = 0.55 Identities = 37/126 (29%), Positives = 44/126 (34%), Gaps = 20/126 (15%) Frame = +2 Query: 125 GGYGQSKPVMNY----------HTQNSDSVTTVV----------TEISHMSLNEKQSAYN 244 GGYGQS Y TQNS S + + S S +QS+Y Sbjct: 39 GGYGQSTDTSGYGQSSYSGSYGQTQNSYSTQSAPQGYGSAGGYGSSQSSQSSYGQQSSYP 98 Query: 245 GAVQQTASLTELCSEDAEVQKHGYGQQACGSDVGGFDALVRDNAAQKHGGGYGGQKASSY 424 G QQ A + S + Q GYG Q GGGYG Q S Y Sbjct: 99 GYGQQPAPSSTSGSYGSSSQSSGYG--------------------QPQGGGYGQQ--SGY 136 Query: 425 SYQHES 442 Q +S Sbjct: 137 GGQQQS 142
>CAH11_HUMAN (O75493) Carbonic anhydrase-related protein 2 precursor (CARP-2)| (CA-RP II) (CA-XI) (Carbonic anhydrase-related protein 11) (CARP XI) (CA-RP XI) Length = 328 Score = 32.0 bits (71), Expect = 0.71 Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 6/98 (6%) Frame = +1 Query: 1 TPPQSNQASQAVVARAIVARSFKA------SKQASSHVHRQACSGVRRRLRPEQARDELP 162 TPP S + ++ RA+ S + S+ S + Q+ SG R L+P L Sbjct: 243 TPPCSETVTWILIDRALNITSLQMHSLRLLSQNPPSQIF-QSLSGNSRPLQP------LA 295 Query: 163 HPELRLRDHRRDGDQPHEPQREAVGVQRRRAADGLPHG 276 H LR RD P P+R G R DG+PHG Sbjct: 296 HRALR---GNRD---PRHPERRCRGPNYRLHVDGVPHG 327
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Frame = +2 Query: 311 GYGQQ---ACGSDVGGFDALVRDNA--AQKHGGGYGGQKASSYSYQHESG 445 GYG + GS+ GG R +Q+ GGGYGG + SSY SG Sbjct: 201 GYGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSG 250
>CAPP2_SORBI (P29194) Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEPCase| 2) (PEPC 2) (CP28) Length = 960 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 120 NPRARLTMDMAACLLACFEAPGYYCSCYYGLACLVALWRC 1 NPR + CLLA A YCS L +++WRC Sbjct: 286 NPRVTPEVTRDVCLLARMMASNLYCSQIEDLMFELSMWRC 325
>REX_CLOPE (Q8XI22) Redox-sensing transcriptional repressor rex| Length = 212 Score = 30.8 bits (68), Expect = 1.6 Identities = 24/95 (25%), Positives = 39/95 (41%) Frame = +2 Query: 143 KPVMNYHTQNSDSVTTVVTEISHMSLNEKQSAYNGAVQQTASLTELCSEDAEVQKHGYGQ 322 K + YH + + V IS L+EK ++Q + C D Q +GY Sbjct: 13 KRLPKYHRYLQELMENDVDRISSKELSEKIGFTASQIRQDLN----CFGDFGQQGYGYNV 68 Query: 323 QACGSDVGGFDALVRDNAAQKHGGGYGGQKASSYS 427 + +++G L RD G G GQ ++Y+ Sbjct: 69 KELYNNIGSILGLTRDYNTVIIGAGNIGQAIANYN 103
>R1AB_CVHSA (P59641) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7073 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 117 PRARLTMDMAACLLACFEAPGYYCSCYYGLACLV 16 P +T + C++ + GY C CY+GL CL+ Sbjct: 3744 PLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLL 3777
>CLN3_MACFA (Q60HH0) Protein CLN3 (Battenin)| Length = 438 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +1 Query: 109 CSGVRRRLRPEQARDELPHPELRLRDHR 192 C+G RRRL + + +P P L L DH+ Sbjct: 4 CAGSRRRLSDSEGEETVPEPRLPLLDHQ 31
>CAPP2_MAIZE (P51059) Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEPCase| 2) (PEPC 2) Length = 967 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 120 NPRARLTMDMAACLLACFEAPGYYCSCYYGLACLVALWRC 1 NPR + CLLA A YCS L +++WRC Sbjct: 293 NPRVTPEVTRDVCLLARMMASNLYCSQIEDLMFELSMWRC 332
>R1AB_BSCR3 (Q3I5J6) Replicase polyprotein 1ab (pp1ab) (ORF1AB) [Includes:| Replicase polyprotein 1a (pp1a) (ORF1A)] [Contains: Leader protein; p65 homolog; NSP1 (EC 3.4.22.-) (Papain-like proteinase) (PL-PRO); 3C-like proteinase (EC 3.4.22.-) (3CL-PRO) (3 Length = 7071 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/34 (35%), Positives = 19/34 (55%) Frame = -3 Query: 117 PRARLTMDMAACLLACFEAPGYYCSCYYGLACLV 16 P +T + C++ + GY C CY+GL CL+ Sbjct: 3742 PLLFITGNTLQCIMLVYCFLGYCCCCYFGLFCLL 3775
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated| protein 10.4) (High sulfur keratin-associated protein 10.4) (Keratin-associated protein 18-4) (Keratin-associated protein 18.4) Length = 401 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 3/45 (6%) Frame = -3 Query: 348 PPTSLPHACCP*PCF---CTSASSLHSSVREAVCCTAPLYADCFS 223 PP P C P PC CT S + S C +P + C S Sbjct: 39 PPCCAPSCCAPAPCLSLVCTPVSRVSSPCCPVTCEPSPCQSGCTS 83
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 29.6 bits (65), Expect = 3.5 Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 4/112 (3%) Frame = +2 Query: 119 FGGGYGQSKPVMNYHTQNSD----SVTTVVTEISHMSLNEKQSAYNGAVQQTASLTELCS 286 +G YGQ++ Y TQ++ S + S S +QS+Y G QQ A + S Sbjct: 55 YGSSYGQTQNT-GYGTQSAPQGYGSTGGYGSSQSSQSSYGQQSSYPGYGQQPAPSSTSGS 113 Query: 287 EDAEVQKHGYGQQACGSDVGGFDALVRDNAAQKHGGGYGGQKASSYSYQHES 442 Q YGQ G GYGGQ+ SY Q S Sbjct: 114 YGGSSQSSSYGQPQSG--------------GYGQQSGYGGQQ-QSYGQQQSS 150
>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B| subunit (Voltage-gated calcium channel alpha subunit Cav2.2) (DOE-4) Length = 2326 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Frame = +1 Query: 58 RSFKASKQASSHVHRQACSGVRRRLRPEQARDELPHPELRL-RDHRRDGDQPHEPQREAV 234 R K K S H G RR + + D+ P E R R HR +Q H Sbjct: 893 RDEKGRKGERSRSHE----GGRRHHHAQSSLDDAPEREHRRHRSHRHGTEQQHREANGTK 948 Query: 235 GVQRRRAADGLPHG 276 G + RA DG G Sbjct: 949 GERHSRAKDGSRSG 962
>CAH11_MOUSE (O70354) Carbonic anhydrase-related protein 2 precursor (CARP-2)| (CA-RP II) (CA-XI) (Carbonic anhydrase-related protein 11) (CARP XI) (CA-RP XI) Length = 328 Score = 29.6 bits (65), Expect = 3.5 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Frame = +1 Query: 1 TPPQSNQASQAVVARAIVARSFKA------SKQASSHVHRQACSGVRRRLRPEQARDELP 162 TPP S + ++ RA+ S + S+ S + Q+ SG R L+P L Sbjct: 243 TPPCSETVTWILIDRALNITSLQMHSLRLLSQNPPSQIF-QSLSGNGRPLQP------LA 295 Query: 163 HPELRLRDHRRDGDQPHEPQREAVGVQRRRAADGLPHG 276 H LR RD P P+R G R DG PHG Sbjct: 296 HRALR---GNRD---PRHPERRCRGPNYRLHVDGGPHG 327
>MAGI1_MOUSE (Q6RHR9) Membrane-associated guanylate kinase, WW and PDZ| domain-containing protein 1 (BAI1-associated protein 1) (BAP-1) (Membrane-associated guanylate kinase inverted 1) (MAGI-1) Length = 1471 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%) Frame = +1 Query: 67 KASKQASSHVHRQACSGVRRRLRPEQARDELP------HPELRLRDHRRDGDQPHEPQRE 228 + ++ A + + R+ RR + PE+ R+ P P R R R DQ P+R Sbjct: 1337 EGTRSADNTLERREKHEKRREISPERKRERSPTRRKDSSPSRRRRSLERLLDQRRSPERR 1396 Query: 229 AVGVQRRRA 255 G RRA Sbjct: 1397 RGGSPERRA 1405
>RGA_DROME (Q94547) Regulator of gene activity (Protein regena)| Length = 585 Score = 29.3 bits (64), Expect = 4.6 Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 10/95 (10%) Frame = +2 Query: 164 TQNSDSVTTVVTEISHMS----------LNEKQSAYNGAVQQTASLTELCSEDAEVQKHG 313 TQNSD T V ++ L+ + N V ++ S V +G Sbjct: 226 TQNSDGTTNAVGSVAGTGGSGGASTENHLDGTEKPMNSIVVSGSASGSSGSNVGVVGGNG 285 Query: 314 YGQQACGSDVGGFDALVRDNAAQKHGGGYGGQKAS 418 G A GS +GG A GGG GG AS Sbjct: 286 LG--AVGSGIGGLAVGGGGGAGSSGGGGVGGNAAS 318
>CLN3_HUMAN (Q13286) Protein CLN3 (Battenin) (Batten disease protein)| Length = 438 Score = 29.3 bits (64), Expect = 4.6 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +1 Query: 109 CSGVRRRLRPEQARDELPHPELRLRDHR 192 C+G RRR + + +P P L L DH+ Sbjct: 4 CAGSRRRFSDSEGEETVPEPRLPLLDHQ 31
>SUT1_STYHA (P53391) High affinity sulphate transporter 1| Length = 667 Score = 28.9 bits (63), Expect = 6.0 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +2 Query: 368 DNAAQKHGGGYGGQKASSYSYQHESG 445 ++++ +HGGG GG +S Y H+ G Sbjct: 20 NSSSHRHGGGGGGDDTTSLPYMHKVG 45
>GRP2_PHAVU (P10496) Glycine-rich cell wall structural protein 1.8 precursor| (GRP 1.8) Length = 465 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = +2 Query: 293 AEVQKHG--YGQQACGSDVGGFDALVRDNAAQKHGGGYGG 406 A V +HG YG G D GG+ +HGGGYGG Sbjct: 332 AAVGEHGGGYGGGQGGGDGGGY------GTGGEHGGGYGG 365
>CAH11_SHEEP (Q95203) Carbonic anhydrase-related protein 2 precursor (CARP 2)| (CA-RP II) (CA-XI) Length = 328 Score = 28.9 bits (63), Expect = 6.0 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 6/98 (6%) Frame = +1 Query: 1 TPPQSNQASQAVVARAIVARSFKA------SKQASSHVHRQACSGVRRRLRPEQARDELP 162 TPP S + ++ RA+ S + S+ S + Q+ SG R L+P L Sbjct: 243 TPPCSETVTWILIDRALNITSLQMHSLRLLSQNPPSQIF-QSLSGNGRPLQP------LA 295 Query: 163 HPELRLRDHRRDGDQPHEPQREAVGVQRRRAADGLPHG 276 H LR RD P P+R G R D +PHG Sbjct: 296 HRALR---GNRD---PRHPERRCRGPNYRLHVDDVPHG 327
>CAPP_TOBAC (P27154) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 964 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = -3 Query: 120 NPRARLTMDMAACLLACFEAPGYYCSCYYGLACLVALWRC 1 NPR L + CLLA A Y S L +++WRC Sbjct: 291 NPRVTLEVTRDVCLLARMMAANLYYSQIEELMFELSMWRC 330
>KR106_HUMAN (P60371) Keratin-associated protein 10-6 (Keratin-associated| protein 10.6) (High sulfur keratin-associated protein 10.6) (Keratin-associated protein 18-6) (Keratin-associated protein 18.6) Length = 365 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%) Frame = -3 Query: 342 TSLP--HACCP*PCFCTSASSLHSSVREAVCCTAPLYADCFSLRLM 211 TS P HACC C S S S + CCTA S+ L+ Sbjct: 262 TSSPCQHACCVPVCSGASTSCCQQSSCQPACCTASCCRSSSSVSLL 307
>SCNNA_BOVIN (P55270) Amiloride-sensitive sodium channel alpha-subunit| (Epithelial Na+ channel alpha subunit) (Alpha ENaC) (Nonvoltage-gated sodium channel 1 alpha subunit) (SCNEA) (Alpha NaCH) Length = 650 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -3 Query: 357 ASNPPTSLPHACCP*PCFCTSASSLHSSVREAVCCTAPLYA 235 AS P SLP + CP P F S+S ++ A+ P YA Sbjct: 587 ASTPAASLPSSFCPHPAF-FSSSPPDPAISPALSAPPPAYA 626 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,372,144 Number of Sequences: 219361 Number of extensions: 775886 Number of successful extensions: 3364 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 3053 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3347 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
