>ref|XM_463605.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1227

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                       
Query: 127 cggctacggccagagcaagcccgtgatgaactaccacacccagaactccgactccgtgac 186
           |||||||||| | ||||||||   | |||||||||||| ||||| ||||||   ||| ||
Sbjct: 54  cggctacggctacagcaagccgcaggtgaactaccacagccagagctccgagagcgtcac 113

                             
Query: 187 caccgtcgtgacggagat 204
           ||||||||||||| ||||
Sbjct: 114 caccgtcgtgacgaagat 131

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                            
Query: 127      cggctacggccagagcaagcccgtgatgaactaccacacccagaactccgactccgtgac 186
                |||||||||| | ||||||||   | |||||||||||| ||||| ||||||   ||| ||
Sbjct: 39665392 cggctacggctacagcaagccgcaggtgaactaccacagccagagctccgagagcgtcac 39665333

                                  
Query: 187      caccgtcgtgacggagat 204
                ||||||||||||| ||||
Sbjct: 39665332 caccgtcgtgacgaagat 39665315

>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0456E05
          Length = 173699

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                          
Query: 127    cggctacggccagagcaagcccgtgatgaactaccacacccagaactccgactccgtgac 186
              |||||||||| | ||||||||   | |||||||||||| ||||| ||||||   ||| ||
Sbjct: 146348 cggctacggctacagcaagccgcaggtgaactaccacagccagagctccgagagcgtcac 146289

                                
Query: 187    caccgtcgtgacggagat 204
              ||||||||||||| ||||
Sbjct: 146288 caccgtcgtgacgaagat 146271

>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0470A12
          Length = 185095

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                         
Query: 127   cggctacggccagagcaagcccgtgatgaactaccacacccagaactccgactccgtgac 186
             |||||||||| | ||||||||   | |||||||||||| ||||| ||||||   ||| ||
Sbjct: 16291 cggctacggctacagcaagccgcaggtgaactaccacagccagagctccgagagcgtcac 16232

                               
Query: 187   caccgtcgtgacggagat 204
             ||||||||||||| ||||
Sbjct: 16231 caccgtcgtgacgaagat 16214

>dbj|AK099048.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149K21, full
           insert sequence
          Length = 1510

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                       
Query: 127 cggctacggccagagcaagcccgtgatgaactaccacacccagaactccgactccgtgac 186
           |||||||||| | ||||||||   | |||||||||||| ||||| ||||||   ||| ||
Sbjct: 116 cggctacggctacagcaagccgcaggtgaactaccacagccagagctccgagagcgtcac 175

                             
Query: 187 caccgtcgtgacggagat 204
           ||||||||||||| ||||
Sbjct: 176 caccgtcgtgacgaagat 193

>dbj|AK072044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108J05, full
           insert sequence
          Length = 1496

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 65/78 (83%)
 Strand = Plus / Plus

                                                                       
Query: 127 cggctacggccagagcaagcccgtgatgaactaccacacccagaactccgactccgtgac 186
           |||||||||| | ||||||||   | |||||||||||| ||||| ||||||   ||| ||
Sbjct: 122 cggctacggctacagcaagccgcaggtgaactaccacagccagagctccgagagcgtcac 181

                             
Query: 187 caccgtcgtgacggagat 204
           ||||||||||||| ||||
Sbjct: 182 caccgtcgtgacgaagat 199

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 411     aggcgtcgtcgtactcgtaccagc 434
               ||||||||||||||||||||||||
Sbjct: 1353703 aggcgtcgtcgtactcgtaccagc 1353726



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 116     gggttcggcggcggctacggccag 139
               ||||||||||||||||||| ||||
Sbjct: 5874243 gggttcggcggcggctacgaccag 5874266

>gb|AC160211.1| Genomic seqeunce for Zea mays BAC clone ZMMBBb0448F23, complete
             sequence
          Length = 132549

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 74/91 (81%)
 Strand = Plus / Plus

                                                                         
Query: 140   agcaagcccgtgatgaactaccacacccagaactccgactccgtgaccaccgtcgtgacg 199
             |||||||||  ||||| ||||||   ||||| | |||| ||||||||||||||||| |||
Sbjct: 99235 agcaagccccagatgagctaccatcgccagagcaccgagtccgtgaccaccgtcgtcacg 99294

                                            
Query: 200   gagatcagccacatgagcctcaacgagaagc 230
             || || | || ||||| | ||||||| ||||
Sbjct: 99295 gaaattaaccgcatgaccatcaacgacaagc 99325

>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 283    cagcgaggacgccgaggtgcagaag 307
              |||||||||||||||||||| ||||
Sbjct: 155226 cagcgaggacgccgaggtgcggaag 155202

>gb|AE005023.1| Halobacterium sp. NRC-1 section 54 of 170 of the complete genome
          Length = 11020

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 257  cagacggcctccctcacggag 277
            |||||||||||||||||||||
Sbjct: 2353 cagacggcctccctcacggag 2373

>gb|AY505473.1| Chlamydomonas reinhardtii circadian RNA-binding protein CHLAMY 1
            subunit C1 mRNA, partial cds
          Length = 2046

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 387  acggcggcggctatggcggg 406
            ||||||||||||||||||||
Sbjct: 1087 acggcggcggctatggcggg 1106

>ref|XM_365677.1| Magnaporthe grisea 70-15 hypothetical protein (MG02379.4) partial
           mRNA
          Length = 726

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 389 ggcggcggctatggcgggca 408
           ||||||||||||||||||||
Sbjct: 694 ggcggcggctatggcgggca 713

>ref|XM_425885.1| PREDICTED: Gallus gallus similar to nuclear orphan receptor
           ROR-beta (LOC428325), mRNA
          Length = 966

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 278 acgccgaggtgcagaagcac 297

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     agccacatgagcctcaacga 225
               ||||||||||||||||||||
Sbjct: 1069611 agccacatgagcctcaacga 1069592

>ref|XM_903197.2| PREDICTED: Mus musculus RAR-related orphan receptor alpha,
           transcript variant 4 (Rora), mRNA
          Length = 11020

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 641 acgccgaggtgcagaagcac 660

>emb|CT009708.6| Mouse DNA sequence from clone RP23-82F10 on chromosome 9, complete
              sequence
          Length = 247670

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 291    acgccgaggtgcagaagcac 310
              ||||||||||||||||||||
Sbjct: 218905 acgccgaggtgcagaagcac 218886

>ref|XM_850239.1| PREDICTED: Canis familiaris similar to Fc fragment of IgG binding
           protein (LOC612513), mRNA
          Length = 957

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 ggagctgtgcagcgaggacg 293
           ||||||||||||||||||||
Sbjct: 222 ggagctgtgcagcgaggacg 241

>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 386     cacggcggcggctatggcgg 405
               ||||||||||||||||||||
Sbjct: 2501508 cacggcggcggctatggcgg 2501489

>emb|Z82994.1|MMZ82994 M.musculus mRNA for nuclear orphan receptor/transcription factor
          Length = 1619

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 470 acgccgaggtgcagaagcac 489

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 372    acgccgcgcagaagcacggcggcg 395
              ||||||||||||||| ||||||||
Sbjct: 595168 acgccgcgcagaagctcggcggcg 595191

>ref|NM_013646.1| Mus musculus RAR-related orphan receptor alpha (Rora), mRNA
          Length = 1657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 475 acgccgaggtgcagaagcac 494

>ref|NM_003890.1| Homo sapiens Fc fragment of IgG binding protein (FCGBP), mRNA
          Length = 16382

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 274  ggagctgtgcagcgaggacg 293
            ||||||||||||||||||||
Sbjct: 1505 ggagctgtgcagcgaggacg 1524

>dbj|AK155827.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F730227N03
           product:RAR-related orphan receptor alpha, full insert
           sequence
          Length = 2278

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 433 acgccgaggtgcagaagcac 452

>dbj|AK149294.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library,
           clone:A930013M22 product:RAR-related orphan receptor
           alpha, full insert sequence
          Length = 2299

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 372 acgccgaggtgcagaagcac 391

>dbj|AK034375.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330184K03 product:RAR-related orphan
            receptor alpha, full insert sequence
          Length = 2971

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 291  acgccgaggtgcagaagcac 310
            ||||||||||||||||||||
Sbjct: 1042 acgccgaggtgcagaagcac 1061

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 245     ggcgccgtgcagcagacggc 264
               ||||||||||||||||||||
Sbjct: 4042221 ggcgccgtgcagcagacggc 4042240

>ref|XM_217192.3| PREDICTED: Rattus norvegicus RAR-related orphan receptor alpha
           (predicted) (Rora_predicted), mRNA
          Length = 2574

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 641 acgccgaggtgcagaagcac 660

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 290     gacgccgaggtgcagaagca 309
               ||||||||||||||||||||
Sbjct: 3152035 gacgccgaggtgcagaagca 3152016

>gb|AC138626.1| Homo sapiens chromosome 19 clone LLNLR-272G5, complete sequence
          Length = 44079

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   ggagctgtgcagcgaggacg 293
             ||||||||||||||||||||
Sbjct: 18427 ggagctgtgcagcgaggacg 18446

>gb|AC007842.1|AC007842 Homo sapiens chromosome 19, BAC 331191 (CIT-B-471f3), complete sequence
          Length = 174009

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   ggagctgtgcagcgaggacg 293
             ||||||||||||||||||||
Sbjct: 42781 ggagctgtgcagcgaggacg 42762

>dbj|D84239.1| Homo sapiens mRNA for IgG Fc binding protein, complete cds
          Length = 16382

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 274  ggagctgtgcagcgaggacg 293
            ||||||||||||||||||||
Sbjct: 1505 ggagctgtgcagcgaggacg 1524

>gb|U53228.1|MMU53228 Mus musculus nuclear hormone receptor ROR-alpha isoform 1 mRNA,
           complete cds
          Length = 1657

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 acgccgaggtgcagaagcac 310
           ||||||||||||||||||||
Sbjct: 475 acgccgaggtgcagaagcac 494

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 245     ggcgccgtgcagcagacggc 264
               ||||||||||||||||||||
Sbjct: 4042208 ggcgccgtgcagcagacggc 4042227

>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132682

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   ggcgccgtgcagcagacggc 264
             ||||||||||||||||||||
Sbjct: 78642 ggcgccgtgcagcagacggc 78661

>gb|AC000399.1|AC000399 Genomic sequence from Mouse 9, complete sequence
          Length = 140554

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   acgccgaggtgcagaagcac 310
             ||||||||||||||||||||
Sbjct: 16865 acgccgaggtgcagaagcac 16884

>dbj|AB031996.1| Ralstonia sp. KN1 genes for regulator protein, phenol hydroxylase
            component, ferredoxin-like protein and catechol
            2,3-dioxygenase, partial and complete cds
          Length = 8654

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 318  ggcagcaggcgtgcggcagc 337
            ||||||||||||||||||||
Sbjct: 6154 ggcagcaggcgtgcggcagc 6135


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,238,583
Number of Sequences: 3902068
Number of extensions: 2238583
Number of successful extensions: 45320
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44686
Number of HSP's gapped (non-prelim): 634
length of query: 446
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 424
effective length of database: 17,147,199,772
effective search space: 7270412703328
effective search space used: 7270412703328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)