ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet92e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478533.1| Oryza sativa (japonica cultivar-group), mRNA 212 7e-52
2dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 7e-52
3gb|AY104024.1| Zea mays PCO092230 mRNA sequence 208 1e-50
4dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
6gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence 84 4e-13
7ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 ... 54 4e-04
8gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein... 54 4e-04
9emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Co... 54 4e-04
10dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown ... 54 4e-04
11gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete s... 48 0.023
12gb|AC135801.24| Medicago truncatula clone mth2-23o16, complete s... 48 0.023
13ref|XM_513425.1| PREDICTED: Pan troglodytes similar to FLJ46354 ... 42 1.4
14gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.4
15emb|Y12482.1|RSGLTBGEN R.sphaeroides gltB gene 42 1.4
16dbj|AK091112.1| Homo sapiens cDNA FLJ33793 fis, clone CD34C20004... 42 1.4
17ref|XM_945383.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.4
18ref|XM_932901.1| PREDICTED: Homo sapiens hypothetical protein LO... 42 1.4
19gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, compl... 42 1.4
20gb|AF149238.1|CLSWS2OP1 Columba livia SWS2 opsin (sws2) gene, ex... 42 1.4
21gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.6
22emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 i... 40 5.6
23gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.6
24emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on ch... 40 5.6
25emb|AL117380.28|HSJ749H19 Human DNA sequence from clone RP4-749H... 40 5.6
26emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.6
27emb|AJ720483.1| Gallus gallus mRNA for hypothetical protein, clo... 40 5.6
28ref|NM_001006163.1| Gallus gallus COP9 constitutive photomorphog... 40 5.6
29dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.6
30gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.6
31gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, comple... 40 5.6 
>ref|XM_478533.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1413

 Score =  212 bits (107), Expect = 7e-52
 Identities = 200/231 (86%)
 Strand = Plus / Plus

                                                                       
Query: 141 gctggacgcgcccaacctcgacgattacctccccgcggactcgctcccgcaggaaccccc 200
           |||||||  ||| ||||| || || ||||||||  | |||||||| ||||||||   |||
Sbjct: 77  gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136

                                                                       
Query: 201 caggactctcaccctgcgcgatcttctggacatctcgccagtgctcaccgaggcagcggg 260
           ||||| ||||   ||||||||||| |||||||||||||| |||||||| || || |||||
Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196

                                                                       
Query: 261 tgccatcgtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaa 320
            |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256

                                                              
Query: 321 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagata 371
            |||||||| || || |||||||| ||||||||||||||||| ||||||||
Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagata 307
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>dbj|AK067845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124G01, full
           insert sequence
          Length = 1413

 Score =  212 bits (107), Expect = 7e-52
 Identities = 200/231 (86%)
 Strand = Plus / Plus

                                                                       
Query: 141 gctggacgcgcccaacctcgacgattacctccccgcggactcgctcccgcaggaaccccc 200
           |||||||  ||| ||||| || || ||||||||  | |||||||| ||||||||   |||
Sbjct: 77  gctggaccggccgaacctggaggactacctcccatccgactcgctgccgcaggagttccc 136

                                                                       
Query: 201 caggactctcaccctgcgcgatcttctggacatctcgccagtgctcaccgaggcagcggg 260
           ||||| ||||   ||||||||||| |||||||||||||| |||||||| || || |||||
Sbjct: 137 caggaatctccatctgcgcgatctgctggacatctcgccggtgctcactgaagcggcggg 196

                                                                       
Query: 261 tgccatcgtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaa 320
            |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 197 cgccatcgtcgatgattcattcacacgttgctttaagtcaaattctccagagccatggaa 256

                                                              
Query: 321 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagata 371
            |||||||| || || |||||||| ||||||||||||||||| ||||||||
Sbjct: 257 ttggaacatttatttattcccattgtggtgcttgggagtagtgataagata 307
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>gb|AY104024.1| Zea mays PCO092230 mRNA sequence
          Length = 1569

 Score =  208 bits (105), Expect = 1e-50
 Identities = 234/277 (84%)
 Strand = Plus / Plus

                                                                       
Query: 141 gctggacgcgcccaacctcgacgattacctccccgcggactcgctcccgcaggaaccccc 200
           |||||||  ||| ||||| || || ||||||||  | |||||||||||||||||  | ||
Sbjct: 125 gctggaccggccaaacctggaggactacctcccgcccgactcgctcccgcaggaggcgcc 184

                                                                       
Query: 201 caggactctcaccctgcgcgatcttctggacatctcgccagtgctcaccgaggcagcggg 260
           | ||| ||||   ||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 185 ccggaatctccatctgcgcgatctgctggacatctcgccggtgctcaccgaggcagcggg 244

                                                                       
Query: 261 tgccatcgtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaa 320
           |||||| |||||||| || |||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 245 tgccattgtcgatgactccttcacacggtgctttaagtcaaattctccagagccatggaa 304

                                                                       
Query: 321 ctggaacatctacttgttcccattatggtgcttgggagtagtcataagatatggactgct 380
            |||||||| ||  ||||||| ||||||||||| || ||||| |||||||||||| | ||
Sbjct: 305 ttggaacatatatctgttccccttatggtgctttggtgtagtaataagatatggaatact 364

                                                
Query: 381 gtttccgctaaggttcttaacacttgtactaggatgg 417
            || || || |||| |||||| |||| | ||||||||
Sbjct: 365 cttcccactgaggtccttaacgcttgcaataggatgg 401
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  131 bits (66), Expect = 2e-27
 Identities = 90/98 (91%)
 Strand = Plus / Minus

                                                                            
Query: 274      gattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaacatctac 333
                |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || 
Sbjct: 20757689 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 20757630

                                                      
Query: 334      ttgttcccattatggtgcttgggagtagtcataagata 371
                || |||||||| ||||||||||||||||| ||||||||
Sbjct: 20757629 ttattcccattgtggtgcttgggagtagtgataagata 20757592



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                           
Query: 216      gcgcgatcttctggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 274
                ||||||||| |||||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 20758616 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 20758558
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>dbj|AP004674.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0681F05
          Length = 144741

 Score =  131 bits (66), Expect = 2e-27
 Identities = 90/98 (91%)
 Strand = Plus / Minus

                                                                          
Query: 274    gattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaacatctac 333
              |||||||||||||||||||| |||||||||||||| ||||||||||| |||||||| || 
Sbjct: 110439 gattcattcacacgttgctttaagtcaaattctccagagccatggaattggaacatttat 110380

                                                    
Query: 334    ttgttcccattatggtgcttgggagtagtcataagata 371
              || |||||||| ||||||||||||||||| ||||||||
Sbjct: 110379 ttattcccattgtggtgcttgggagtagtgataagata 110342



 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                         
Query: 216    gcgcgatcttctggacatctcgccagtgctcaccgaggcagcgggtgccatcgtcgatg 274
              ||||||||| |||||||||||||| |||||||| || || ||||| |||||||||||||
Sbjct: 111366 gcgcgatctgctggacatctcgccggtgctcactgaagcggcgggcgccatcgtcgatg 111308
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>gb|BT013293.1| Lycopersicon esculentum clone 134908R, mRNA sequence
          Length = 1444

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 75/86 (87%)
 Strand = Plus / Plus

                                                                       
Query: 274 gattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaacatctac 333
           ||||| ||||| || ||||||||||||||| | || || || ||||||||||||||||| 
Sbjct: 265 gattctttcacccgatgcttcaagtcaaatccaccagaaccttggaactggaacatctat 324

                                     
Query: 334 ttgttcccattatggtgcttgggagt 359
           ||||| || |||||||||||||||||
Sbjct: 325 ttgtttcctttatggtgcttgggagt 350
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>ref|NM_125455.2| Arabidopsis thaliana acyltransferase AT5G60620 mRNA, complete cds
          Length = 1323

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 108/135 (80%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaccctgcgcgatcttctggacatctcgccagtgctcaccgaggcagcgggtgccatc 267
           |||| |||||| ||| | || |||||||| |||  |||||| || || || |||||||| 
Sbjct: 165 ctcagcctgcgtgatttgctagacatctctccaacgctcactgaagctgctggtgccatt 224

                                                                       
Query: 268 gtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaac 327
           || ||||| || |||||| | || ||||| |||||| |||| || || ||||||||||| 
Sbjct: 225 gttgatgactcgttcacaagatgtttcaaatcaaatcctccagaaccttggaactggaat 284

                          
Query: 328 atctacttgttccca 342
           || ||||| ||||||
Sbjct: 285 atttacttattccca 299
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>gb|BT006033.1| Arabidopsis thaliana clone U51225 unknown protein (At5g60620) mRNA,
           complete cds
          Length = 1162

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 108/135 (80%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaccctgcgcgatcttctggacatctcgccagtgctcaccgaggcagcgggtgccatc 267
           |||| |||||| ||| | || |||||||| |||  |||||| || || || |||||||| 
Sbjct: 115 ctcagcctgcgtgatttgctagacatctctccaacgctcactgaagctgctggtgccatt 174

                                                                       
Query: 268 gtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaac 327
           || ||||| || |||||| | || ||||| |||||| |||| || || ||||||||||| 
Sbjct: 175 gttgatgactcgttcacaagatgtttcaaatcaaatcctccagaaccttggaactggaat 234

                          
Query: 328 atctacttgttccca 342
           || ||||| ||||||
Sbjct: 235 atttacttattccca 249
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>emb|BX830392.1|CNS09ZYY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB77ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 108/135 (80%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaccctgcgcgatcttctggacatctcgccagtgctcaccgaggcagcgggtgccatc 267
           |||| |||||| ||| | || |||||||| |||  |||||| || || || |||||||| 
Sbjct: 155 ctcagcctgcgtgatttgctagacatctctccaacgctcactgaagctgctggtgccatt 214

                                                                       
Query: 268 gtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaac 327
           || ||||| || |||||| | || ||||| |||||| |||| || || ||||||||||| 
Sbjct: 215 gttgatgactcgttcacaagatgtttcaaatcaaatcctccagaaccttggaactggaat 274

                          
Query: 328 atctacttgttccca 342
           || ||||| ||||||
Sbjct: 275 atttacttattccca 289
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>dbj|AK118869.1| Arabidopsis thaliana At5g60620 mRNA for unknown protein, complete
           cds, clone: RAFL21-19-N13
          Length = 1324

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 108/135 (80%)
 Strand = Plus / Plus

                                                                       
Query: 208 ctcaccctgcgcgatcttctggacatctcgccagtgctcaccgaggcagcgggtgccatc 267
           |||| |||||| ||| | || |||||||| |||  |||||| || || || |||||||| 
Sbjct: 165 ctcagcctgcgtgatttgctagacatctctccaacgctcactgaagctgctggtgccatt 224

                                                                       
Query: 268 gtcgatgattcattcacacgttgcttcaagtcaaattctccggagccatggaactggaac 327
           || ||||| || |||||| | || ||||| |||||| |||| || || ||||||||||| 
Sbjct: 225 gttgatgactcgttcacaagatgtttcaaatcaaatcctccagaaccttggaactggaat 284

                          
Query: 328 atctacttgttccca 342
           || ||||| ||||||
Sbjct: 285 atttacttattccca 299
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>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence
          Length = 129948

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                        
Query: 292  ttcaagtcaaattctccggagccatggaactggaacatctacttgttcccattatggtgc 351
            |||||||||||| |||| || |||||||| |||||||| || ||||| || || ||||| 
Sbjct: 1187 ttcaagtcaaatcctccagaaccatggaattggaacatttatttgtttcctttgtggtgt 1246

                    
Query: 352  ttgggagt 359
            || |||||
Sbjct: 1247 ttcggagt 1254
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>gb|AC135801.24| Medicago truncatula clone mth2-23o16, complete sequence
          Length = 115452

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                          
Query: 292    ttcaagtcaaattctccggagccatggaactggaacatctacttgttcccattatggtgc 351
              |||||||||||| |||| || |||||||| |||||||| || ||||| || || ||||| 
Sbjct: 113456 ttcaagtcaaatcctccagaaccatggaattggaacatttatttgtttcctttgtggtgt 113515

                      
Query: 352    ttgggagt 359
              || |||||
Sbjct: 113516 ttcggagt 113523
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>ref|XM_513425.1| PREDICTED: Pan troglodytes similar to FLJ46354 protein (LOC456875),
           mRNA
          Length = 4908

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 644 cctccccgcggactcgctccc 664
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 79      cggcgtcatcgacgtcgccatcgtc 103
               ||||||||||| |||||||||||||
Sbjct: 2566904 cggcgtcatcgtcgtcgccatcgtc 2566928
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>emb|Y12482.1|RSGLTBGEN R.sphaeroides gltB gene
          Length = 5510

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 214  ctgcgcgatcttctggacatc 234
            |||||||||||||||||||||
Sbjct: 3266 ctgcgcgatcttctggacatc 3286
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>dbj|AK091112.1| Homo sapiens cDNA FLJ33793 fis, clone CD34C2000443, weakly similar
           to Acyl-CoA hydrolase
          Length = 2875

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 91  cctccccgcggactcgctccc 111
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>ref|XM_945383.1| PREDICTED: Homo sapiens hypothetical protein LOC652284 (LOC652284),
           mRNA
          Length = 375

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 84  cctccccgcggactcgctccc 64
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>ref|XM_932901.1| PREDICTED: Homo sapiens hypothetical protein LOC645442 (LOC645442),
           mRNA
          Length = 375

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 168 cctccccgcggactcgctccc 188
           |||||||||||||||||||||
Sbjct: 84  cctccccgcggactcgctccc 64
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>gb|AC099796.2| Homo sapiens chromosome 1 clone RP5-866L20, complete sequence
          Length = 132033

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   cctccccgcggactcgctccc 188
             |||||||||||||||||||||
Sbjct: 76734 cctccccgcggactcgctccc 76754
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>gb|AF149238.1|CLSWS2OP1 Columba livia SWS2 opsin (sws2) gene, exon 1
          Length = 452

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 ggcgctggacgcgcccaacct 158
           |||||||||||||||||||||
Sbjct: 102 ggcgctggacgcgcccaacct 122
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    atcgtctcgccggcgtcggc 117
             ||||||||||||||||||||
Sbjct: 12201 atcgtctcgccggcgtcggc 12182
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>emb|CR352209.10| Zebrafish DNA sequence from clone DKEY-150O13 in linkage group 24,
             complete sequence
          Length = 143425

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   acatctacttgttcccatta 345
             ||||||||||||||||||||
Sbjct: 57632 acatctacttgttcccatta 57651
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 79      cggcgtcatcgacgtcgcca 98
               ||||||||||||||||||||
Sbjct: 2507573 cggcgtcatcgacgtcgcca 2507554



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      tcatcgacgtcgccatcgtc 103
               ||||||||||||||||||||
Sbjct: 2019602 tcatcgacgtcgccatcgtc 2019583
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>emb|AL357833.16| Human DNA sequence from clone RP11-482E14 on chromosome 10 Contains two
             novel genes and a CpG island, complete sequence
          Length = 178563

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cgctgggagaagatggcgtc 137
             ||||||||||||||||||||
Sbjct: 78200 cgctgggagaagatggcgtc 78181
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>emb|AL117380.28|HSJ749H19 Human DNA sequence from clone RP4-749H19 on chromosome 20q13.11-13.33
             Contains ESTs, STSs, GSSs and a CpG island, complete
             sequence
          Length = 178473

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   ccccccaggactctcaccct 215
             ||||||||||||||||||||
Sbjct: 18604 ccccccaggactctcaccct 18623
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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    cggcgtcatcgacgtcgcca 98
             ||||||||||||||||||||
Sbjct: 13279 cggcgtcatcgacgtcgcca 13260
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>emb|AJ720483.1| Gallus gallus mRNA for hypothetical protein, clone 18l12
          Length = 1613

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 127 aagatggcgtcggcgctgga 146
           ||||||||||||||||||||
Sbjct: 43  aagatggcgtcggcgctgga 62
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>ref|NM_001006163.1| Gallus gallus COP9 constitutive photomorphogenic homolog subunit 3
           (Arabidopsis) (COPS3), mRNA
          Length = 1613

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 127 aagatggcgtcggcgctgga 146
           ||||||||||||||||||||
Sbjct: 43  aagatggcgtcggcgctgga 62
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 126     gaagatggcgtcggcgctgg 145
               ||||||||||||||||||||
Sbjct: 2805714 gaagatggcgtcggcgctgg 2805733
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 75      tccgcggcgtcatcgacgtcgcca 98
               ||||||||||||||||| ||||||
Sbjct: 3898982 tccgcggcgtcatcgacttcgcca 3899005
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>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence
          Length = 210088

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    ggttcttaacacttgtacta 411
              ||||||||||||||||||||
Sbjct: 128612 ggttcttaacacttgtacta 128631


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,377,645
Number of Sequences: 3902068
Number of extensions: 2377645
Number of successful extensions: 43708
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43247
Number of HSP's gapped (non-prelim): 460
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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