>STAB2_HUMAN (Q8WWQ8) Stabilin-2 precursor (FEEL-2 protein) (Fasciclin EGF-like|
           laminin-type EGF-like and link domain-containing
           scavenger receptor 1) (FAS1 EGF-like and X-link
           domain-containing adhesion molecule 2) (Hyaluronan
           receptor for endocytosis) [
          Length = 2551

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = +3

Query: 213 NSNSVLVALLDSHYTXXXXXXXXXXXXQSL-EDAVGRGNVTIFAPQNEALERDLDPEFRA 389
           N+   ++ +L   Y+             +L ED VG G  TIF P NEAL    D     
Sbjct: 515 NNEQTIMTMLQPRYSKFRSLLEETNLGHALDEDGVG-GPYTIFVPNNEALNNMKDGTL-D 572

Query: 390 FLLEPRNLCSLQRLLLFH 443
           +LL P     L  L+ +H
Sbjct: 573 YLLSPEGSRKLLELVRYH 590

>PACC_YARLI (P78978) pH-response transcription factor pacC/RIM101|
          Length = 585

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
 Frame = +3

Query: 18  FFPENAPPPQTQQQPHLIQSQLEPAAMGAPLYGXXXXXXXXXXXXXP--DQQPTLPSSSA 191
           +  ++ PP Q QQQ    Q Q +     AP                P     P  PS  +
Sbjct: 6   YLAQSQPPQQQQQQQQQPQQQSQQLPTTAPSAAPQVNNTTANKPLYPASPNSPISPSDYS 65

Query: 192 ANISTGVNSNSVLVALLDSHY 254
           AN++ G +S  +L++ + +H+
Sbjct: 66  ANMNVGGDSVDMLLSSVSAHH 86

>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)|
          Length = 2570

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +3

Query: 327  VTIFAPQNEALERDLDPEFRAFLLEPRNLCSLQR 428
            VT   P +EA  R L PE RAF L+PR L +L R
Sbjct: 1021 VTALVP-SEAAVRQLSPEDRAFWLQPRTLPNLVR 1053



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 315 GRGNVTIFAPQNEALERDLDPEFRAFLLEPRNLCSLQRLLLFH 443
           G G  T+FAP NEA++   D   R   L    L  LQ L+ +H
Sbjct: 537 GPGPFTVFAPSNEAVDSLRDG--RLIYLFTAGLSKLQELVRYH 577

>THIE_XANAC (Q8PH45) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP|
           pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate
           synthase)
          Length = 212

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 392 EGAELRVEVPLEGLVLGREDGDVAAA 315
           + A+L  +V  +G+ LG +DGDVAAA
Sbjct: 71  DDAQLAAQVGAQGVHLGEDDGDVAAA 96

>THIE_CHRVO (Q7P1R3) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP|
           pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate
           synthase)
          Length = 207

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 392 EGAELRVEVPLEGLVLGREDGDVAAA 315
           +  EL   +  +G+ LGR+DGD+AAA
Sbjct: 70  DDVELAERIGADGVHLGRDDGDIAAA 95

>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)|
          Length = 2571

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3

Query: 315 GRGNVTIFAPQNEALERDLDPEFRAFLLEPRNLCSLQRLLLFH 443
           G G  T+FAP NEA++   D   R   L    L  LQ L+ +H
Sbjct: 538 GPGPFTVFAPSNEAVDSLRDG--RLIYLFTAGLSKLQELVRYH 578

>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 88  PPPWARRFTAPSSSAWHSPRRRCRTSSPHCP 180
           PPP  RR+++ S S    PRRR  +  P  P
Sbjct: 716 PPPRRRRYSSDSRSPSPPPRRRQYSDEPRSP 746

>POSTN_MOUSE (Q62009) Periostin precursor (PN) (Osteoblast-specific factor 2)|
           (OSF-2)
          Length = 838

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 303 EDAVGRGNVTIFAPQNEALERDLDPEFR 386
           E+  G+G+ T FAP NEA E +LD + R
Sbjct: 126 EEIEGKGSYTYFAPSNEAWE-NLDSDIR 152


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,213,911
Number of Sequences: 219361
Number of extensions: 422943
Number of successful extensions: 2179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2172
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)