ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet92c03 |
|---|---|
| Clone Library Name | barley_pub |
>LEC1_MEDTR (Q01806) Lectin 1 precursor| Length = 277 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/81 (34%), Positives = 40/81 (49%) Frame = +2 Query: 194 NLVLDGAATITAIGLVELTNATTHQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFVCGIVS 373 NL+ G A T+ G ++LT A + G A + AP+ + S TG V +F F I + Sbjct: 47 NLIFQGNAITTSTGKLQLTKAVKNSIGRALYSAPIHIWDSK--TGDVANFETLFTFAITA 104 Query: 374 SYTDFSTHGLALVIAPGVRKP 436 Y+ GLA IAP +P Sbjct: 105 PYSSNVADGLAFFIAPVDTQP 125
>LEA1_PHAVU (P02873) Alpha-amylase inhibitor 1 precursor (Alpha-AI-1)| (Alpha-AI1) (Lectin) [Contains: Alpha-amylase inhibitor 1 chain 1; Alpha-amylase inhibitor 1 chain 2] Length = 246 Score = 47.4 bits (111), Expect = 2e-05 Identities = 28/85 (32%), Positives = 44/85 (51%) Frame = +2 Query: 167 FVYTGFTGSNLVLDGAATITAIGLVELTNATTHQKGHAFHPAPLRLRGSPDGTGTVRSFS 346 F+ F +NL+L G AT+++ G ++L+ + AF+ AP+++R S TG V SF Sbjct: 29 FIIDAFNKTNLILQGDATVSSNGNLQLSYNSYDSMSRAFYSAPIQIRDST--TGNVASFD 86 Query: 347 VAFVCGIVSSYTDFSTHGLALVIAP 421 F I + S GL V+ P Sbjct: 87 TNFTMNIRTHRQANSAVGLDFVLVP 111
>LEC2_MEDTR (Q01807) Truncated lectin 2 precursor| Length = 280 Score = 43.5 bits (101), Expect = 2e-04 Identities = 28/81 (34%), Positives = 39/81 (48%) Frame = +2 Query: 194 NLVLDGAATITAIGLVELTNATTHQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFVCGIVS 373 NL+ G A + G +EL+ A + G A + AP+ + S TG+V +F F I + Sbjct: 43 NLIFQGDAKTASTGKLELSKAVKNSIGRALYSAPIHIWDSK--TGSVANFQTTFTFTITA 100 Query: 374 SYTDFSTHGLALVIAPGVRKP 436 T GLA IAP KP Sbjct: 101 PNTYNVADGLAFFIAPIDTKP 121
>LEA2_PHAVU (Q41114) Alpha-amylase inhibitor 2 precursor (Alpha-AI-2)| (Alpha-AI2) (Lectin) [Contains: Alpha-amylase inhibitor 2 chain 1; Alpha-amylase inhibitor 2 chain 2] Length = 240 Score = 43.1 bits (100), Expect = 3e-04 Identities = 28/85 (32%), Positives = 42/85 (49%) Frame = +2 Query: 167 FVYTGFTGSNLVLDGAATITAIGLVELTNATTHQKGHAFHPAPLRLRGSPDGTGTVRSFS 346 F + F +NL+L G AT+++ G ++L T AF+ AP+++R S TG V SF Sbjct: 27 FNFYSFNETNLILQGDATVSSKGYLQL--HTVDSMCSAFYSAPIQIRDST--TGNVASFD 82 Query: 347 VAFVCGIVSSYTDFSTHGLALVIAP 421 F I + S GL + P Sbjct: 83 TNFTMNITTQREANSVIGLDFALVP 107
>ARC2_PHAVU (P19330) Arcelin-2 precursor| Length = 265 Score = 42.7 bits (99), Expect = 4e-04 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Frame = +2 Query: 182 FTGSNLVLDGAATITAIGLVELTNATTHQK---GHAFHPAPLRLRGSPDGTGTVRSFSVA 352 F +NL+L G AT+++ G + LTN +++ G AF+ AP+++ + SFS Sbjct: 32 FNKTNLILQGDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRT--IDNLASFSTN 89 Query: 353 FVCGIVSSYTDFSTHGLALVIAPGVRKP 436 F I + + S +GLA + P +P Sbjct: 90 FTFRINAKNNENSAYGLAFALVPVGSRP 117
>PHAM_PHAVU (P15231) Leucoagglutinating phytohemagglutinin precursor (PHA-L)| Length = 273 Score = 42.4 bits (98), Expect = 5e-04 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Frame = +2 Query: 167 FVYTGFTGSNLVLDGAATITAIGLVELTNA------TTHQKGHAFHPAPLRLRGSPDGTG 328 F + F +NL+L G A++++ G + LTN T G AF+ AP+++ TG Sbjct: 27 FSFDRFNETNLILQGDASVSSSGQLRLTNVNSNGEPTVGSLGRAFYSAPIQIWDYT--TG 84 Query: 329 TVRSFSVAFVCGIVSSYTDFSTHGLALVIAPGVRKP 436 V SF F I+ GLA + P +P Sbjct: 85 NVASFDTNFTFNILVPNNAGPADGLAFALVPVGSQP 120
>ARC1_PHAVU (P19329) Arcelin-1 precursor| Length = 265 Score = 42.4 bits (98), Expect = 5e-04 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Frame = +2 Query: 182 FTGSNLVLDGAATITAIGLVELTNATTHQK---GHAFHPAPLRLRGSPDGTGTVRSFSVA 352 F +NL+L G AT+++ G + LTN +++ G AF+ AP+++ + SFS Sbjct: 32 FNKTNLILQGDATVSSEGHLLLTNVKGNEEDSMGRAFYSAPIQINDRT--IDNLASFSTN 89 Query: 353 FVCGIVSSYTDFSTHGLALVIAPGVRKP 436 F I + + S +GLA + P +P Sbjct: 90 FTFRINAKNIENSAYGLAFALVPVGSRP 117
>ARC4_PHAVU (Q43629) Arcelin-4 precursor| Length = 266 Score = 42.0 bits (97), Expect = 6e-04 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 7/97 (7%) Frame = +2 Query: 167 FVYTGFTGSNLVLDGAATITAIGLVELTNA------TTHQKGHAFHPAPLRLRGSPDGTG 328 F +T F + L+L G A++++ G + LT T G AF+ AP+++R S TG Sbjct: 27 FNFTSFDTNKLILQGDASVSSKGQLLLTKVRGNGDPTVDSMGRAFYYAPIQIRDST--TG 84 Query: 329 TVRSFSVAFVCGI-VSSYTDFSTHGLALVIAPGVRKP 436 + SF F I S + S GLA + P +P Sbjct: 85 KLASFDTNFTFSIRPYSNNENSAFGLAFALVPVDSEP 121
>PHAL_PHAVU (P05087) Leucoagglutinating phytohemagglutinin precursor (PHA-L)| Length = 272 Score = 40.8 bits (94), Expect = 0.001 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 6/96 (6%) Frame = +2 Query: 167 FVYTGFTGSNLVLDGAATITAIGLVELTNATTHQK------GHAFHPAPLRLRGSPDGTG 328 F + F +NL+L A++++ G + LTN + + G AF+ AP+++ + TG Sbjct: 26 FNFQRFNETNLILQRDASVSSSGQLRLTNLNGNGEPRVGSLGRAFYSAPIQIWDNT--TG 83 Query: 329 TVRSFSVAFVCGIVSSYTDFSTHGLALVIAPGVRKP 436 TV SF+ +F I GLA + P +P Sbjct: 84 TVASFATSFTFNIQVPNNAGPADGLAFALVPVGSQP 119
>PHAE_PHAVU (P05088) Erythroagglutinating phytohemagglutinin precursor (PHA-E)| Length = 275 Score = 38.5 bits (88), Expect = 0.007 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Frame = +2 Query: 167 FVYTGFTGSNLVLDGAATITAIGLVELTNA------TTHQKGHAFHPAPLRLRGSPDGTG 328 F + F +NL+L AT+++ G + LTN T G AF+ AP+++ + TG Sbjct: 27 FSFQRFNETNLILQRDATVSSKGQLRLTNVNDNGEPTLSSLGRAFYSAPIQIWDNT--TG 84 Query: 329 TVRSFSVAFVCGIVSSYTDFSTHGLALVIAPGVRKP 436 V + +F I GLA V+ P +P Sbjct: 85 AVAASPTSFTFNIDVPNNSGPADGLAFVLLPVGSQP 120
>LECS_VATMA (P81371) Seed lectin (VML) [Contains: Seed lectin alpha chain; Seed| lectin gamma chain; Seed lectin beta chain] Length = 240 Score = 36.2 bits (82), Expect = 0.035 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%) Frame = +2 Query: 167 FVYTGFTGS--NLVLDGAATITAIGLVELTNA-----TTHQKGHAFHPAPLRLRGSPDGT 325 F +T F + +++L G A +T+ G ++LT H G A + AP+ + D T Sbjct: 6 FSFTKFNPNPKDIILQGDALVTSKGKLQLTKVKDGKPVDHSLGRALYAAPIHIWD--DST 63 Query: 326 GTVRSFSVAFVCGIVSSYTDFSTHGLALVIAPGVRKP 436 V SF+ +F + + + G+A +AP +P Sbjct: 64 DRVASFATSFSFVVEAPDESKTADGIAFFLAPPDTQP 100
>LECR_CLALU (Q39527) Lectin-related protein precursor (CLLRP) (LRPCL)| (Fragment) Length = 290 Score = 35.0 bits (79), Expect = 0.079 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Frame = +2 Query: 167 FVYTGFTGSN--LVLDGAATITAIGLVELTNATT-----HQKGHAFHPAPLRLRGSPDGT 325 F +T F + L+L G A +++ G ++LT H G A + P+ + S T Sbjct: 42 FTFTKFVSNQDELLLQGDALVSSKGELQLTRVENGQPIPHSVGRALYSDPVHIWDS--ST 99 Query: 326 GTVRSFSVAFVCGIVSSYTDFSTHGLALVIAP 421 G+V SF +F + + + + G+A +AP Sbjct: 100 GSVASFVTSFTFVVEAPNENKTADGIAFFLAP 131
>LCB1_ROBPS (Q41159) Bark agglutinin I, polypeptide A precursor (RPbAI)| (LECRPA1) Length = 285 Score = 33.5 bits (75), Expect = 0.23 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Frame = +2 Query: 197 LVLDGAATITAIGLVELTNATT-----HQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFVC 361 L+ A +T+ G+++LTN G A + AP ++ S TG V SF +F Sbjct: 49 LIFQRDALVTSTGVLQLTNVVNGVPSGKSLGRALYAAPFQIWDST--TGNVASFVTSFSF 106 Query: 362 GIVSSYTDFSTHGLALVIAPGVRKP 436 I + + GLA +AP +P Sbjct: 107 IIQAPNPTTTADGLAFFLAPVDTQP 131
>LEC_SOYBN (P05046) Lectin precursor (Agglutinin) (SBA)| Length = 285 Score = 33.1 bits (74), Expect = 0.30 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%) Frame = +2 Query: 194 NLVLDGAATITAIGLVELTNATTH------QKGHAFHPAPLRLRGSPDGTGTVRSFSVAF 355 N++L G A +T+ G ++L + G A + P+ + TG+V SF+ +F Sbjct: 49 NMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKE--TGSVASFAASF 106 Query: 356 VCGIVSSYTDFSTHGLALVIAPGVRKP 436 + T GLA +AP KP Sbjct: 107 NFTFYAPDTKRLADGLAFFLAPIDTKP 133
>LCS2_ROBPS (Q41161) Seed agglutinin II precursor (RPSAII) (LECRPAS2)| Length = 285 Score = 33.1 bits (74), Expect = 0.30 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Frame = +2 Query: 197 LVLDGAATITAIGLVELTNATT-----HQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFVC 361 L+ A +T+ G+++LTN G A + AP ++ S TG V SF +F Sbjct: 49 LIFQRDALVTSTGVLQLTNVVNGVPSRKSLGRALYAAPFQIWDST--TGNVASFVTSFSF 106 Query: 362 GIVSSYTDFSTHGLALVIAPGVRKP 436 I + + GLA +AP +P Sbjct: 107 IIQAPNPATTADGLAFFLAPVDTQP 131
>LECB_SOPJA (P93538) Bark lectin precursor (LECSJABG) (Fragment)| Length = 270 Score = 32.3 bits (72), Expect = 0.51 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%) Frame = +2 Query: 194 NLVLDGAATITAIGLVELTNATT-----HQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFV 358 +L+L G A +++ G ++LT + G A + AP+ + + TG V SF+ +F Sbjct: 32 DLLLQGDALVSSEGELQLTTVENGVPVWNSTGRALYYAPVHIWDN--STGRVASFATSFS 89 Query: 359 CGIVSSYTDFSTHGLALVIAP 421 + + S G+A +AP Sbjct: 90 FVVKAPVASKSADGIAFFLAP 110
>LECS_SOPJA (P93535) Seed lectin precursor (LECSJASG)| Length = 292 Score = 32.0 bits (71), Expect = 0.67 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%) Frame = +2 Query: 194 NLVLDGAATITAIGLVELTNATT-----HQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFV 358 +L+L G A +++ G ++LT + G A + AP+ + TG V SF+ +F Sbjct: 54 DLLLQGDALVSSKGELQLTTVENGVPIWNSTGRALYYAPVHIWDK--STGRVASFATSFS 111 Query: 359 CGIVSSYTDFSTHGLALVIAP 421 + + S G+A +AP Sbjct: 112 FVVKAPVASKSADGIAFFLAP 132
>LCS1_ROBPS (Q41162) Seed agglutinin I precursor (RPSAI) (LECRPAS1)| Length = 285 Score = 32.0 bits (71), Expect = 0.67 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%) Frame = +2 Query: 197 LVLDGAATITAIGLVELTNATT-----HQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFVC 361 L+ A +T+ G+++LTN G A + AP ++ + TG V SF +F Sbjct: 49 LIFQRDALVTSTGVLQLTNVVNGVPPRRSIGRALYAAPFQIWDNT--TGNVASFVTSFSF 106 Query: 362 GIVSSYTDFSTHGLALVIAPGVRKP 436 I + + GLA +AP +P Sbjct: 107 IIQAPNPATTADGLAFFLAPVDTQP 131
>LEC2_CYTSC (P29257) 2-acetamido-2-deoxy-D-galactose-binding seed lectin 2| (2-acetamido-2-deoxy-D-galactose-binding seed lectin II) (CSII) Length = 248 Score = 31.6 bits (70), Expect = 0.87 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Frame = +2 Query: 194 NLVLDGAATITAIGLVELTNA-----TTHQKGHAFHPAPLRLRGSPDGTGTVRSFSVAFV 358 NL+L A IT G ++LT + G A + P+ + G + +FV Sbjct: 17 NLILQRDALITPTGKLQLTTVENGKPAAYSLGRALYSTPIHIWDKSTGDEASFATFFSFV 76 Query: 359 CGIVSSYTDFSTHGLALVIAPGVRKP 436 + + +T GLA +AP +P Sbjct: 77 ISDAPNPSTAATDGLAFFLAPADTQP 102
>HIS6_COREF (Q8FNZ9) Imidazole glycerol phosphate synthase subunit hisF (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF) (ImGP synthase subunit hisF) (IGPS subunit hisF) Length = 258 Score = 30.8 bits (68), Expect = 1.5 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -1 Query: 226 RDGGRAVEDEVRAGEAGVDELLAVGVGSGDDGR 128 RD G VE R GE G DEL + V + DGR Sbjct: 28 RDAGDPVELAKRYGEEGADELTFLDVSASKDGR 60
>RPOB_THIDA (Q3SLQ6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1359 Score = 29.6 bits (65), Expect = 3.3 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%) Frame = -1 Query: 295 GGRVERVALLVGGGVCQLHQADRRD---GGRAV----EDEVRAGEAGVD 170 G +ER A + G V H+ R D GR V ++E RAGE GVD Sbjct: 706 GTGIERTAAVDSGTVVIAHRGGRVDYVDAGRIVIRVHDEEARAGEVGVD 754
>TF3C1_RAT (Q63505) General transcription factor 3C polypeptide 1 (Transcription| factor IIIC-alpha subunit) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit) Length = 2148 Score = 28.9 bits (63), Expect = 5.7 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%) Frame = -2 Query: 417 AMTSARPWVLKSV*LETMP-QTKATEKDRTVPVPSG 313 AM SA+PW+L SV L+ + TKA+ D +P+G Sbjct: 1801 AMASAQPWLLPSVRLKDVEIDTKASGDDSQSRLPAG 1836
>ARRB_CAEEL (P51485) Probable beta-arrestin| Length = 435 Score = 28.9 bits (63), Expect = 5.7 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -2 Query: 372 ETMPQTKATEKDRTVPVPSGDPRSRRGAGWNAWPFWWVVA 253 ET T+K + P+ R +R G NA+PFW+ VA Sbjct: 87 ETFQVYPQTDKSISRPLSRLQERLKRKLGANAFPFWFEVA 126
>HIS61_PROMM (Q7V8Q8) Imidazole glycerol phosphate synthase subunit hisF1 (EC| 4.1.3.-) (IGP synthase cyclase subunit) (IGP synthase subunit hisF1) (ImGP synthase subunit hisF1) (IGPS subunit hisF1) Length = 256 Score = 28.5 bits (62), Expect = 7.4 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = -1 Query: 226 RDGGRAVEDEVRAGEAGVDELLAVGVGSGDDGR 128 RD G VE R +AG DEL+ + + + +GR Sbjct: 27 RDAGDPVELACRYSQAGADELVFLDIAASHEGR 59
>FES_HUMAN (P07332) Proto-oncogene tyrosine-protein kinase Fes/Fps (EC| 2.7.10.2) (C-Fes) Length = 822 Score = 28.5 bits (62), Expect = 7.4 Identities = 11/29 (37%), Positives = 14/29 (48%) Frame = +1 Query: 25 ASSLHHFSLQSTNGDDAHVLPPDPLPLRW 111 A LHH SLQ + G + P P+ W Sbjct: 45 AGLLHHMSLQDSGGQSRAISPDSPISQSW 73
>HISZ_PSEAE (Q9HUM5) ATP phosphoribosyltransferase regulatory subunit| Length = 394 Score = 28.5 bits (62), Expect = 7.4 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Frame = -1 Query: 262 GGGVCQLHQADRRDGGRAV-----EDEVRAGEAGVDELLAVGVGS 143 G G+ Q Q RRDG R V +D A EAG D LA+ G+ Sbjct: 342 GAGLWQAVQRLRRDGQRVVQALPGQDAASAREAGCDRQLALRDGN 386
>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (Contrin) (MSY2 homolog) Length = 364 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -2 Query: 393 VLKSV*LETMPQTKATEKDRTVPVPSGDPRSRRGAG 286 V +V T+P T A VPVP+G+P+ GAG Sbjct: 9 VATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAG 44
>RPOS_YEREN (P47765) RNA polymerase sigma factor rpoS| Length = 331 Score = 28.1 bits (61), Expect = 9.7 Identities = 15/25 (60%), Positives = 15/25 (60%) Frame = -1 Query: 208 VEDEVRAGEAGVDELLAVGVGSGDD 134 VEDE E DELLA GV SG D Sbjct: 33 VEDEPTESELAEDELLAQGVTSGAD 57 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.126 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,810,463 Number of Sequences: 219361 Number of extensions: 753884 Number of successful extensions: 2209 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2184 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2203 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
