ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet92b03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ417496.1| Phyllostachys aureosulcata putative trypanothione-dependent peroxidase pseudogene mRNA, partial sequence Length = 833 Score = 392 bits (198), Expect = e-106 Identities = 369/426 (86%) Strand = Plus / Minus Query: 1 atcaaactattcatagtgtgcttggtacagcaaatcgtgcctacgtaatttcaaacacgg 60 |||||||||||||||| |||||||||||| | |||||| |||| |||||||||||| || Sbjct: 647 atcaaactattcatagcgtgcttggtacacctgatcgtgactacttaatttcaaacaagg 588 Query: 61 ggaagaaggtacccatcgttgatcttgaggggaagtatgttggtatatgctttgtagtga 120 | | |||||||||||| ||| ||||||||||||||||||||| | |||||||| |||| Sbjct: 587 gagacaaggtacccatctctgaccttgaggggaagtatgttggtgtgtgctttgtggtga 528 Query: 121 acggctatcctccagttgaggaatttacctcagtgcttgccaagatatatgcgaaactca 180 ||||||| ||||||||| ||||||||| |||||||||| ||||| |||| ||||||| Sbjct: 527 gcggctatggtccagttgatgaatttaccacagtgcttgctaagatttatggtaaactca 468 Query: 181 aagaagtgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcat 240 ||||||||||| ||||||||||||||||||||||||||||| |||| || |||| || Sbjct: 467 aagaagtggggcagaagtttgaagttgtagctgtatccttggacagcgatgaggcagaat 408 Query: 241 tcaatacgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtc 300 | ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 407 ttaatgagagttttgcaagcatgccttggctcgccattcctcagggtgacaagatgtgtg 348 Query: 301 agaagcttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctg 360 ||||||| || |||||||||||||||| ||||||||||||| || ||||||||||||| Sbjct: 347 agaagctggttcgttactttgagcttagcaatcttcctacacttgtcctgattggtcctg 288 Query: 361 atggtaagacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcat 420 |||| |||||||||| || |||| | |||| ||| |||| || |||||| ||||||||| Sbjct: 287 atgggaagacactgaacaacaatgtcgcggagataattgaagaacatggtatggatgcat 228 Query: 421 gggagg 426 |||||| Sbjct: 227 gggagg 222
>ref|XM_470924.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2069 Score = 238 bits (120), Expect = 1e-59 Identities = 348/424 (82%) Strand = Plus / Plus Query: 1 atcaaactattcatagtgtgcttggtacagcaaatcgtgcctacgtaatttcaaacacgg 60 |||||||| |||| ||||||||||||||| | | || | |||| || |||| |||| || Sbjct: 563 atcaaactgttcaaagtgtgcttggtacacccacccgcgactacttactttcgaacaagg 622 Query: 61 ggaagaaggtacccatcgttgatcttgaggggaagtatgttggtatatgctttgtagtga 120 | | | |||||||||| ||| |||||||| ||||| |||||| | |||||||| |||| Sbjct: 623 gagatagggtacccatctctgaccttgagggcaagtacgttggtttgtgctttgtggtga 682 Query: 121 acggctatcctccagttgaggaatttacctcagtgcttgccaagatatatgcgaaactca 180 | |||||| ||||| | ||||||||||| ||||||| || | |||| |||||||| Sbjct: 683 atggctatggcccagtagtccaatttacctcattgcttgctaaattttatgagaaactca 742 Query: 181 aagaagtgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcat 240 ||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||| | || Sbjct: 743 aagaagtaggggagaaatttgaagttgtagctgtatccttggacagtgatgaggaattat 802 Query: 241 tcaatacgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtc 300 |||| ||||||| || ||||||||||||| ||||| ||||||| ||||||||| || Sbjct: 803 ccaatgagagttttgcaggcatgccttggcttgccatccctcaggaagacaagatgggtg 862 Query: 301 agaagcttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctg 360 ||||||| | |||| ||||||||||| | || |||||||| || ||||||||||||| Sbjct: 863 agaagctggctcgttattttgagcttagaggcctgcctacacttgtcctgattggtcctg 922 Query: 361 atggtaagacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcat 420 |||| |||||||||| || |||| |||| | |||| |||||||||||||| ||||||| Sbjct: 923 atgggaagacactgaacaacaatgttgctgacataattgatgagcatggtcaagatgcat 982 Query: 421 ggga 424 |||| Sbjct: 983 ggga 986
>dbj|AK069583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022B19, full insert sequence Length = 2057 Score = 238 bits (120), Expect = 1e-59 Identities = 348/424 (82%) Strand = Plus / Plus Query: 1 atcaaactattcatagtgtgcttggtacagcaaatcgtgcctacgtaatttcaaacacgg 60 |||||||| |||| ||||||||||||||| | | || | |||| || |||| |||| || Sbjct: 577 atcaaactgttcaaagtgtgcttggtacacccacccgcgactacttactttcgaacaagg 636 Query: 61 ggaagaaggtacccatcgttgatcttgaggggaagtatgttggtatatgctttgtagtga 120 | | | |||||||||| ||| |||||||| ||||| |||||| | |||||||| |||| Sbjct: 637 gagatagggtacccatctctgaccttgagggcaagtacgttggtttgtgctttgtggtga 696 Query: 121 acggctatcctccagttgaggaatttacctcagtgcttgccaagatatatgcgaaactca 180 | |||||| ||||| | ||||||||||| ||||||| || | |||| |||||||| Sbjct: 697 atggctatggcccagtagtccaatttacctcattgcttgctaaattttatgagaaactca 756 Query: 181 aagaagtgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcat 240 ||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||| | || Sbjct: 757 aagaagtaggggagaaatttgaagttgtagctgtatccttggacagtgatgaggaattat 816 Query: 241 tcaatacgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtc 300 |||| ||||||| || ||||||||||||| ||||| ||||||| ||||||||| || Sbjct: 817 ccaatgagagttttgcaggcatgccttggcttgccatccctcaggaagacaagatgggtg 876 Query: 301 agaagcttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctg 360 ||||||| | |||| ||||||||||| | || |||||||| || ||||||||||||| Sbjct: 877 agaagctggctcgttattttgagcttagaggcctgcctacacttgtcctgattggtcctg 936 Query: 361 atggtaagacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcat 420 |||| |||||||||| || |||| |||| | |||| |||||||||||||| ||||||| Sbjct: 937 atgggaagacactgaacaacaatgttgctgacataattgatgagcatggtcaagatgcat 996 Query: 421 ggga 424 |||| Sbjct: 997 ggga 1000
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 234 bits (118), Expect = 2e-58 Identities = 298/358 (83%) Strand = Plus / Plus Query: 67 aggtacccatcgttgatcttgaggggaagtatgttggtatatgctttgtagtgaacggct 126 ||||||||||| ||| |||||||| ||||| |||||| | |||||||| ||||| |||| Sbjct: 16408257 aggtacccatctctgaccttgagggcaagtacgttggtttgtgctttgtggtgaatggct 16408316 Query: 127 atcctccagttgaggaatttacctcagtgcttgccaagatatatgcgaaactcaaagaag 186 || ||||| | ||||||||||| ||||||| || | |||| |||||||||||||| Sbjct: 16408317 atggcccagtagtccaatttacctcattgcttgctaaattttatgagaaactcaaagaag 16408376 Query: 187 tgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcattcaata 246 | |||||||| |||||||||||||||||||||||| ||||||| ||||| | || |||| Sbjct: 16408377 taggggagaaatttgaagttgtagctgtatccttggacagtgatgaggaattatccaatg 16408436 Query: 247 cgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtcagaagc 306 ||||||| || ||||||||||||| ||||| ||||||| ||||||||| || |||||| Sbjct: 16408437 agagttttgcaggcatgccttggcttgccatccctcaggaagacaagatgggtgagaagc 16408496 Query: 307 ttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctgatggta 366 | | |||| ||||||||||| | || |||||||| || ||||||||||||||||| | Sbjct: 16408497 tggctcgttattttgagcttagaggcctgcctacacttgtcctgattggtcctgatggga 16408556 Query: 367 agacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcatggga 424 ||||||||| || |||| |||| | |||| |||||||||||||| ||||||||||| Sbjct: 16408557 agacactgaacaacaatgttgctgacataattgatgagcatggtcaagatgcatggga 16408614 Score = 206 bits (104), Expect = 4e-50 Identities = 275/332 (82%) Strand = Plus / Plus Query: 93 aagtatgttggtatatgctttgtagtgaacggctatcctccagttgaggaatttacctca 152 |||||||||||| | |||||||| ||||| |||||| |||||||| |||| |||||| Sbjct: 16444234 aagtatgttggtttgtgctttgtggtgaatggctatggtccagttgttcaattcacctca 16444293 Query: 153 gtgcttgccaagatatatgcgaaactcaaagaagtgggggagaagtttgaagttgtagct 212 ||||||||||| ||||||| ||||| |||| ||| ||||||||||||||||||||| Sbjct: 16444294 gtgcttgccaaaatatatgaaaaacttaaagcagttggggagaagtttgaagttgtaatg 16444353 Query: 213 gtatccttgaacagtgacgaggagtcattcaatacgagtttttcaagcatgccttggctc 272 ||||| ||| || |||| ||||| ||||||||| ||||||| || |||||||||||| Sbjct: 16444354 gtatcattggacggtgatgaggaatcattcaatgagagttttgcagacatgccttggctt 16444413 Query: 273 gccattcctcagggcgacaagatgtgtcagaagcttgtcagttactttgagcttagtgat 332 |||||||||||||| || ||||||||| ||||||| | |||| |||||||| |||| Sbjct: 16444414 gccattcctcagggagataagatgtgtgagaagctggctcgttattttgagctcagtggc 16444473 Query: 333 cttcctacactagtgctgattggtcctgatggtaagacactgagcagcaatattgcgggc 392 ||||||| || || ||||||||||||||||| |||||||||| | ||||||| | | Sbjct: 16444474 cttcctatgcttgtcctgattggtcctgatgggaagacactgaatgacgatattgctgac 16444533 Query: 393 atatttgatgagcatggtttggatgcatggga 424 ||| |||||||||||||| ||||||||||| Sbjct: 16444534 ataattgatgagcatggtccagatgcatggga 16444565 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 atcaaactattcatagtgtgcttggtaca 29 ||||||||||||||||| || |||||||| Sbjct: 16444050 atcaaactattcatagtctgtttggtaca 16444078 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 atcaaactattcatagtgtgcttggtaca 29 |||||||| |||| ||||||||||||||| Sbjct: 16408106 atcaaactgttcaaagtgtgcttggtaca 16408134
>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete sequence Length = 146775 Score = 234 bits (118), Expect = 2e-58 Identities = 298/358 (83%) Strand = Plus / Minus Query: 67 aggtacccatcgttgatcttgaggggaagtatgttggtatatgctttgtagtgaacggct 126 ||||||||||| ||| |||||||| ||||| |||||| | |||||||| ||||| |||| Sbjct: 58953 aggtacccatctctgaccttgagggcaagtacgttggtttgtgctttgtggtgaatggct 58894 Query: 127 atcctccagttgaggaatttacctcagtgcttgccaagatatatgcgaaactcaaagaag 186 || ||||| | ||||||||||| ||||||| || | |||| |||||||||||||| Sbjct: 58893 atggcccagtagtccaatttacctcattgcttgctaaattttatgagaaactcaaagaag 58834 Query: 187 tgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcattcaata 246 | |||||||| |||||||||||||||||||||||| ||||||| ||||| | || |||| Sbjct: 58833 taggggagaaatttgaagttgtagctgtatccttggacagtgatgaggaattatccaatg 58774 Query: 247 cgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtcagaagc 306 ||||||| || ||||||||||||| ||||| ||||||| ||||||||| || |||||| Sbjct: 58773 agagttttgcaggcatgccttggcttgccatccctcaggaagacaagatgggtgagaagc 58714 Query: 307 ttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctgatggta 366 | | |||| ||||||||||| | || |||||||| || ||||||||||||||||| | Sbjct: 58713 tggctcgttattttgagcttagaggcctgcctacacttgtcctgattggtcctgatggga 58654 Query: 367 agacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcatggga 424 ||||||||| || |||| |||| | |||| |||||||||||||| ||||||||||| Sbjct: 58653 agacactgaacaacaatgttgctgacataattgatgagcatggtcaagatgcatggga 58596 Score = 206 bits (104), Expect = 4e-50 Identities = 275/332 (82%) Strand = Plus / Minus Query: 93 aagtatgttggtatatgctttgtagtgaacggctatcctccagttgaggaatttacctca 152 |||||||||||| | |||||||| ||||| |||||| |||||||| |||| |||||| Sbjct: 22984 aagtatgttggtttgtgctttgtggtgaatggctatggtccagttgttcaattcacctca 22925 Query: 153 gtgcttgccaagatatatgcgaaactcaaagaagtgggggagaagtttgaagttgtagct 212 ||||||||||| ||||||| ||||| |||| ||| ||||||||||||||||||||| Sbjct: 22924 gtgcttgccaaaatatatgaaaaacttaaagcagttggggagaagtttgaagttgtaatg 22865 Query: 213 gtatccttgaacagtgacgaggagtcattcaatacgagtttttcaagcatgccttggctc 272 ||||| ||| || |||| ||||| ||||||||| ||||||| || |||||||||||| Sbjct: 22864 gtatcattggacggtgatgaggaatcattcaatgagagttttgcagacatgccttggctt 22805 Query: 273 gccattcctcagggcgacaagatgtgtcagaagcttgtcagttactttgagcttagtgat 332 |||||||||||||| || ||||||||| ||||||| | |||| |||||||| |||| Sbjct: 22804 gccattcctcagggagataagatgtgtgagaagctggctcgttattttgagctcagtggc 22745 Query: 333 cttcctacactagtgctgattggtcctgatggtaagacactgagcagcaatattgcgggc 392 ||||||| || || ||||||||||||||||| |||||||||| | ||||||| | | Sbjct: 22744 cttcctatgcttgtcctgattggtcctgatgggaagacactgaatgacgatattgctgac 22685 Query: 393 atatttgatgagcatggtttggatgcatggga 424 ||| |||||||||||||| ||||||||||| Sbjct: 22684 ataattgatgagcatggtccagatgcatggga 22653 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1 atcaaactattcatagtgtgcttggtaca 29 |||||||| |||| ||||||||||||||| Sbjct: 59104 atcaaactgttcaaagtgtgcttggtaca 59076 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1 atcaaactattcatagtgtgcttggtaca 29 ||||||||||||||||| || |||||||| Sbjct: 23168 atcaaactattcatagtctgtttggtaca 23140
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 234 bits (118), Expect = 2e-58 Identities = 298/358 (83%) Strand = Plus / Plus Query: 67 aggtacccatcgttgatcttgaggggaagtatgttggtatatgctttgtagtgaacggct 126 ||||||||||| ||| |||||||| ||||| |||||| | |||||||| ||||| |||| Sbjct: 16401890 aggtacccatctctgaccttgagggcaagtacgttggtttgtgctttgtggtgaatggct 16401949 Query: 127 atcctccagttgaggaatttacctcagtgcttgccaagatatatgcgaaactcaaagaag 186 || ||||| | ||||||||||| ||||||| || | |||| |||||||||||||| Sbjct: 16401950 atggcccagtagtccaatttacctcattgcttgctaaattttatgagaaactcaaagaag 16402009 Query: 187 tgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcattcaata 246 | |||||||| |||||||||||||||||||||||| ||||||| ||||| | || |||| Sbjct: 16402010 taggggagaaatttgaagttgtagctgtatccttggacagtgatgaggaattatccaatg 16402069 Query: 247 cgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtcagaagc 306 ||||||| || ||||||||||||| ||||| ||||||| ||||||||| || |||||| Sbjct: 16402070 agagttttgcaggcatgccttggcttgccatccctcaggaagacaagatgggtgagaagc 16402129 Query: 307 ttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctgatggta 366 | | |||| ||||||||||| | || |||||||| || ||||||||||||||||| | Sbjct: 16402130 tggctcgttattttgagcttagaggcctgcctacacttgtcctgattggtcctgatggga 16402189 Query: 367 agacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcatggga 424 ||||||||| || |||| |||| | |||| |||||||||||||| ||||||||||| Sbjct: 16402190 agacactgaacaacaatgttgctgacataattgatgagcatggtcaagatgcatggga 16402247 Score = 206 bits (104), Expect = 4e-50 Identities = 275/332 (82%) Strand = Plus / Plus Query: 93 aagtatgttggtatatgctttgtagtgaacggctatcctccagttgaggaatttacctca 152 |||||||||||| | |||||||| ||||| |||||| |||||||| |||| |||||| Sbjct: 16437859 aagtatgttggtttgtgctttgtggtgaatggctatggtccagttgttcaattcacctca 16437918 Query: 153 gtgcttgccaagatatatgcgaaactcaaagaagtgggggagaagtttgaagttgtagct 212 ||||||||||| ||||||| ||||| |||| ||| ||||||||||||||||||||| Sbjct: 16437919 gtgcttgccaaaatatatgaaaaacttaaagcagttggggagaagtttgaagttgtaatg 16437978 Query: 213 gtatccttgaacagtgacgaggagtcattcaatacgagtttttcaagcatgccttggctc 272 ||||| ||| || |||| ||||| ||||||||| ||||||| || |||||||||||| Sbjct: 16437979 gtatcattggacggtgatgaggaatcattcaatgagagttttgcagacatgccttggctt 16438038 Query: 273 gccattcctcagggcgacaagatgtgtcagaagcttgtcagttactttgagcttagtgat 332 |||||||||||||| || ||||||||| ||||||| | |||| |||||||| |||| Sbjct: 16438039 gccattcctcagggagataagatgtgtgagaagctggctcgttattttgagctcagtggc 16438098 Query: 333 cttcctacactagtgctgattggtcctgatggtaagacactgagcagcaatattgcgggc 392 ||||||| || || ||||||||||||||||| |||||||||| | ||||||| | | Sbjct: 16438099 cttcctatgcttgtcctgattggtcctgatgggaagacactgaatgacgatattgctgac 16438158 Query: 393 atatttgatgagcatggtttggatgcatggga 424 ||| |||||||||||||| ||||||||||| Sbjct: 16438159 ataattgatgagcatggtccagatgcatggga 16438190 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 atcaaactattcatagtgtgcttggtaca 29 ||||||||||||||||| || |||||||| Sbjct: 16437675 atcaaactattcatagtctgtttggtaca 16437703 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 1 atcaaactattcatagtgtgcttggtaca 29 |||||||| |||| ||||||||||||||| Sbjct: 16401739 atcaaactgttcaaagtgtgcttggtaca 16401767
>gb|U90944.1|ZMU90944 Zea mays PDI-like protein mRNA, complete cds Length = 2004 Score = 220 bits (111), Expect = 3e-54 Identities = 312/379 (82%) Strand = Plus / Plus Query: 48 atttcaaacacggggaagaaggtacccatcgttgatcttgaggggaagtatgttggtata 107 |||||||||| ||| | |||||||||||| ||| ||||||||||||||||||||| | Sbjct: 677 atttcaaacaagggagacaaggtacccatctctgagcttgaggggaagtatgttggtctt 736 Query: 108 tgctttgtagtgaacggctatcctccagttgaggaatttacctcagtgcttgccaagata 167 |||||||| ||| | |||| ||| ||| | | ||||| || |||||||| ||||| Sbjct: 737 tgctttgtggtggatggctttccaccactcgctgaattcactgaggtgcttgctaagatc 796 Query: 168 tatgcgaaactcaaagaagtgggggagaagtttgaagttgtagctgtatccttgaacagt 227 |||| |||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| Sbjct: 797 tatgagaaactcaaagaagtgggagagaaatttgaagttgtagctgtatccttggacagt 856 Query: 228 gacgaggagtcattcaatacgagtttttcaagcatgccttggctcgccattcctcagggc 287 || ||| ||||| ||| ||||||| ||| ||||||||||| || |||||||| || Sbjct: 857 gaagagtcatcatttaatgagagttttgcaaagatgccttggcttgcaattcctcaaggt 916 Query: 288 gacaagatgtgtcagaagcttgtcagttactttgagcttagtgatcttcctacactagtg 347 |||| | |||||||| ||| || ||||||||||||||||| |||||| |||||||| Sbjct: 917 gacattaagtgtcagacgctggttcgttactttgagcttagttctcttccaacactagtt 976 Query: 348 ctgattggtcctgatggtaagacactgagcagcaatattgcgggcatatttgatgagcat 407 |||||||| |||||||| |||||||||| || |||| | || | |||| |||| || ||| Sbjct: 977 ctgattggccctgatgggaagacactgaacaacaatgtcgccgacataattgacgaccat 1036 Query: 408 ggtttggatgcatgggagg 426 ||||| || |||||||||| Sbjct: 1037 ggttttgaggcatgggagg 1055
>ref|XM_470929.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1746 Score = 206 bits (104), Expect = 4e-50 Identities = 344/424 (81%) Strand = Plus / Plus Query: 1 atcaaactattcatagtgtgcttggtacagcaaatcgtgcctacgtaatttcaaacacgg 60 ||||||||||||||||| || |||||||| | | || | |||| |||| | |||| || Sbjct: 518 atcaaactattcatagtctgtttggtacacccacccgcgactacttaatcaccaacaagg 577 Query: 61 ggaagaaggtacccatcgttgatcttgaggggaagtatgttggtatatgctttgtagtga 120 | | ||||| |||||| ||| || || || |||||||||||| | |||||||| |||| Sbjct: 578 gagacaaggtgcccatctctgacctcgaaggcaagtatgttggtttgtgctttgtggtga 637 Query: 121 acggctatcctccagttgaggaatttacctcagtgcttgccaagatatatgcgaaactca 180 | |||||| |||||||| |||| ||||||||||||||||| ||||||| ||||| | Sbjct: 638 atggctatggtccagttgttcaattcacctcagtgcttgccaaaatatatgaaaaactta 697 Query: 181 aagaagtgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcat 240 ||| ||| ||||||||||||||||||||| ||||| ||| || |||| ||||| |||| Sbjct: 698 aagcagttggggagaagtttgaagttgtaatggtatcattggacggtgatgaggaatcat 757 Query: 241 tcaatacgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtc 300 ||||| ||||||| || |||||||||||| |||||||||||||| || ||||||||| Sbjct: 758 tcaatgagagttttgcagacatgccttggcttgccattcctcagggagataagatgtgtg 817 Query: 301 agaagcttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctg 360 ||||||| | |||| |||||||| |||| ||||||| || || ||||||||||||| Sbjct: 818 agaagctggctcgttattttgagctcagtggccttcctatgcttgtcctgattggtcctg 877 Query: 361 atggtaagacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcat 420 |||| |||||||||| | ||||||| | |||| |||||||||||||| ||||||| Sbjct: 878 atgggaagacactgaatgacgatattgctgacataattgatgagcatggtccagatgcat 937 Query: 421 ggga 424 |||| Sbjct: 938 ggga 941
>gb|AC134886.5| Oryza sativa chromosome 3 BAC OSJNBa0002D18 genomic sequence, complete sequence Length = 145714 Score = 206 bits (104), Expect = 4e-50 Identities = 275/332 (82%) Strand = Plus / Minus Query: 93 aagtatgttggtatatgctttgtagtgaacggctatcctccagttgaggaatttacctca 152 |||||||||||| | |||||||| ||||| |||||| |||||||| |||| |||||| Sbjct: 140099 aagtatgttggtttgtgctttgtggtgaatggctatggtccagttgttcaattcacctca 140040 Query: 153 gtgcttgccaagatatatgcgaaactcaaagaagtgggggagaagtttgaagttgtagct 212 ||||||||||| ||||||| ||||| |||| ||| ||||||||||||||||||||| Sbjct: 140039 gtgcttgccaaaatatatgaaaaacttaaagcagttggggagaagtttgaagttgtaatg 139980 Query: 213 gtatccttgaacagtgacgaggagtcattcaatacgagtttttcaagcatgccttggctc 272 ||||| ||| || |||| ||||| ||||||||| ||||||| || |||||||||||| Sbjct: 139979 gtatcattggacggtgatgaggaatcattcaatgagagttttgcagacatgccttggctt 139920 Query: 273 gccattcctcagggcgacaagatgtgtcagaagcttgtcagttactttgagcttagtgat 332 |||||||||||||| || ||||||||| ||||||| | |||| |||||||| |||| Sbjct: 139919 gccattcctcagggagataagatgtgtgagaagctggctcgttattttgagctcagtggc 139860 Query: 333 cttcctacactagtgctgattggtcctgatggtaagacactgagcagcaatattgcgggc 392 ||||||| || || ||||||||||||||||| |||||||||| | ||||||| | | Sbjct: 139859 cttcctatgcttgtcctgattggtcctgatgggaagacactgaatgacgatattgctgac 139800 Query: 393 atatttgatgagcatggtttggatgcatggga 424 ||| |||||||||||||| ||||||||||| Sbjct: 139799 ataattgatgagcatggtccagatgcatggga 139768 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1 atcaaactattcatagtgtgcttggtaca 29 ||||||||||||||||| || |||||||| Sbjct: 140283 atcaaactattcatagtctgtttggtaca 140255
>gb|AY110214.1| Zea mays CL1652_1 mRNA sequence Length = 2105 Score = 194 bits (98), Expect = 2e-46 Identities = 230/274 (83%) Strand = Plus / Plus Query: 153 gtgcttgccaagatatatgcgaaactcaaagaagtgggggagaagtttgaagttgtagct 212 |||||||| ||||| |||| |||||||||||||||||| ||||| ||||||||||||||| Sbjct: 755 gtgcttgctaagatctatgagaaactcaaagaagtgggagagaaatttgaagttgtagct 814 Query: 213 gtatccttgaacagtgacgaggagtcattcaatacgagtttttcaagcatgccttggctc 272 ||||||||| ||||||| ||| ||||| ||| ||||||| ||| ||||||||||| Sbjct: 815 gtatccttggacagtgaagagtcatcatttaatgagagttttgcaaagatgccttggctt 874 Query: 273 gccattcctcagggcgacaagatgtgtcagaagcttgtcagttactttgagcttagtgat 332 || |||||||| || |||| | |||||||| ||| || ||||||||||||||||| | Sbjct: 875 gcaattcctcaaggtgacattaagtgtcagacgctggttcgttactttgagcttagttct 934 Query: 333 cttcctacactagtgctgattggtcctgatggtaagacactgagcagcaatattgcgggc 392 ||||| |||||||| |||||||| |||||||| |||||||||| || |||| | || | | Sbjct: 935 cttccaacactagttctgattggccctgatgggaagacactgaacaacaatgtcgccgac 994 Query: 393 atatttgatgagcatggtttggatgcatgggagg 426 ||| |||| || |||||||| || |||||||||| Sbjct: 995 ataattgacgaccatggttttgaggcatgggagg 1028 Score = 42.1 bits (21), Expect = 1.4 Identities = 42/49 (85%) Strand = Plus / Plus Query: 48 atttcaaacacggggaagaaggtacccatcgttgatcttgaggggaagt 96 |||||||||| ||| | |||||||||||| ||| ||||||||||||| Sbjct: 650 atttcaaacaagggagacaaggtacccatctctgagcttgaggggaagt 698
>dbj|AK104893.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-F03, full insert sequence Length = 1287 Score = 176 bits (89), Expect = 4e-41 Identities = 203/241 (84%) Strand = Plus / Plus Query: 184 aagtgggggagaagtttgaagttgtagctgtatccttgaacagtgacgaggagtcattca 243 |||| |||||||| |||||||||||||||||||||||| ||||||| ||||| | || || Sbjct: 1 aagtaggggagaaatttgaagttgtagctgtatccttggacagtgatgaggaattatcca 60 Query: 244 atacgagtttttcaagcatgccttggctcgccattcctcagggcgacaagatgtgtcaga 303 || ||||||| || ||||||||||||| ||||| ||||||| ||||||||| || ||| Sbjct: 61 atgagagttttgcaggcatgccttggcttgccatccctcaggaagacaagatgggtgaga 120 Query: 304 agcttgtcagttactttgagcttagtgatcttcctacactagtgctgattggtcctgatg 363 |||| | |||| ||||||||||| | || |||||||| || |||||||||||||||| Sbjct: 121 agctggctcgttattttgagcttagaggcctgcctacacttgtcctgattggtcctgatg 180 Query: 364 gtaagacactgagcagcaatattgcgggcatatttgatgagcatggtttggatgcatggg 423 | |||||||||| || |||| |||| | |||| |||||||||||||| |||||||||| Sbjct: 181 ggaagacactgaacaacaatgttgctgacataattgatgagcatggtcaagatgcatggg 240 Query: 424 a 424 | Sbjct: 241 a 241
>gb|AC153357.4| Mus musculus BAC clone RP24-124N8 from chromosome 10, complete sequence Length = 189789 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 aagtatgttggtatatgctt 112 |||||||||||||||||||| Sbjct: 46433 aagtatgttggtatatgctt 46414
>emb|AL512652.18| Human DNA sequence from clone RP11-261P13 on chromosome 13 Contains the 3' end of the IL17D gene for interleukin 17, a vovel gene, a RAN, member RAS oncogene family (RAN) pseudogene, the 3' end of the gene for likely ortholog of mouse exportin 4 (XPO4) and 2 CpG islands, complete sequence Length = 135110 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 agaagcttgtcagttacttt 320 |||||||||||||||||||| Sbjct: 77652 agaagcttgtcagttacttt 77633
>gb|BC098402.1| Homo sapiens cDNA clone IMAGE:30528617, with apparent retained intron Length = 5149 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 agaagcttgtcagttacttt 320 |||||||||||||||||||| Sbjct: 4498 agaagcttgtcagttacttt 4517
>gb|AY593809.1| Foot-and-mouth disease virus C5 isolate c5arg iso60, complete genome Length = 8191 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 catagtgtgcttggtacagcaaat 35 ||||||||||| |||||||||||| Sbjct: 6927 catagtgtgctgggtacagcaaat 6950
>dbj|AP001359.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-820L6, complete sequences Length = 221535 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttttcaagcatgccttggct 271 |||||||||||||||||||| Sbjct: 10110 ttttcaagcatgccttggct 10091
>dbj|AP001924.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-166D19, complete sequence Length = 190360 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 ttttcaagcatgccttggct 271 |||||||||||||||||||| Sbjct: 91749 ttttcaagcatgccttggct 91730
>dbj|AP006379.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13A11, TM0224, complete sequence Length = 102670 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ggggagaagtttgaagttgt 208 |||||||||||||||||||| Sbjct: 84351 ggggagaagtttgaagttgt 84332 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,277,164 Number of Sequences: 3902068 Number of extensions: 3277164 Number of successful extensions: 55647 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55548 Number of HSP's gapped (non-prelim): 90 length of query: 426 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 404 effective length of database: 17,147,199,772 effective search space: 6927468707888 effective search space used: 6927468707888 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
