| Clone Name | baet92a12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 182995 Score = 48.1 bits (24), Expect = 0.005 Identities = 24/24 (100%) Strand = Plus / Minus Query: 43 cacctcctctgcccctcctcctac 66 |||||||||||||||||||||||| Sbjct: 51800 cacctcctctgcccctcctcctac 51777
>gb|AC102675.9| Mus musculus, clone RP23-232O16, complete sequence Length = 208734 Score = 48.1 bits (24), Expect = 0.005 Identities = 24/24 (100%) Strand = Plus / Minus Query: 43 cacctcctctgcccctcctcctac 66 |||||||||||||||||||||||| Sbjct: 187862 cacctcctctgcccctcctcctac 187839
>gb|AC125012.12| Mus musculus chromosome 7, clone RP24-143K11, complete sequence Length = 141809 Score = 44.1 bits (22), Expect = 0.084 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 ccacctcctctgcccctcctcc 63 |||||||||||||||||||||| Sbjct: 90378 ccacctcctctgcccctcctcc 90357
>gb|AC163222.4| Mus musculus chromosome 7, clone RP24-157O12, complete sequence Length = 180557 Score = 44.1 bits (22), Expect = 0.084 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 ccacctcctctgcccctcctcc 63 |||||||||||||||||||||| Sbjct: 172609 ccacctcctctgcccctcctcc 172588
>ref|NM_117407.2| Arabidopsis thaliana unknown protein AT4G13340 mRNA, complete cds Length = 2448 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 1319 ctccaccgccaccacctcctc 1339
>ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1419 Score = 42.1 bits (21), Expect = 0.33 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 12 cgtccccgccgccgccacgctccaccgccaccacctc 48 |||||||||||||||| | | |||||||||||||||| Sbjct: 133 cgtccccgccgccgccgc-cgccaccgccaccacctc 98
>ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 42.1 bits (21), Expect = 0.33 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 12 cgtccccgccgccgccacgctccaccgccaccacctc 48 |||||||||||||||| | | |||||||||||||||| Sbjct: 48 cgtccccgccgccgccgc-cgccaccgccaccacctc 13
>gb|AY358717.1| Homo sapiens clone DNA82424 CL25084 (UNQ1878) mRNA, complete cds Length = 2285 Score = 42.1 bits (21), Expect = 0.33 Identities = 24/25 (96%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctctgcccc 57 |||||||||| |||||||||||||| Sbjct: 142 ccaccgccacaacctcctctgcccc 118
>gb|AC091543.2| Felis catus clone RP86-588L5, complete sequence Length = 166752 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctctg 53 ||||||||||||||||||||| Sbjct: 124565 ccaccgccaccacctcctctg 124545
>emb|AL157713.10| Human DNA sequence from clone RP11-110J1 on chromosome 1q23.3-24.3 Contains the ETV3 gene for ets variant gene 3, a cytochrome c somatic pseudogene (HCP2), a ets variant gene 3 (ETV3) pseudogene, a keratin 8 (KRT8) pseudogene, a smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) (SMU1) pseudogene, the 5' end of the ARHGEF11 gene for Rho guanine nucleotide exchange factor (GEF) 11 and two CPG islands, complete sequence Length = 167292 Score = 42.1 bits (21), Expect = 0.33 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Plus Query: 11 ccgtccccgccgccgccacgctccaccgccacc 43 ||||||||||||||||||| | ||||||||||| Sbjct: 43753 ccgtccccgccgccgccac-cgccaccgccacc 43784
>emb|AL161536.2|ATCHRIV36 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 36 Length = 199634 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 46669 ctccaccgccaccacctcctc 46689
>emb|AL049608.1|ATT9E8 Arabidopsis thaliana DNA chromosome 4, BAC clone T9E8, partial sequence (ESSA project) Length = 95432 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 30690 ctccaccgccaccacctcctc 30710
>emb|AJ308111.1|LFL308111 Lampetra fluviatilis mRNA for keratin gamma 2 Length = 2068 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 387 ctccaccgccaccacctcctc 367
>gb|AC151614.2| Emiliania huxleyi clone JGIACCU-13K1, complete sequence Length = 42022 Score = 42.1 bits (21), Expect = 0.33 Identities = 24/25 (96%) Strand = Plus / Minus Query: 7 ctctccgtccccgccgccgccacgc 31 |||||| |||||||||||||||||| Sbjct: 20273 ctctccctccccgccgccgccacgc 20249
>gb|AC182397.3| Pan troglodytes BAC clone CH251-345O12 from chromosome 16, complete sequence Length = 158303 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 ctccgtccccgccgccgccac 29 ||||||||||||||||||||| Sbjct: 148789 ctccgtccccgccgccgccac 148809
>ref|XM_626474.1| Cryptosporidium parvum Iowa II Po1 beta superfamily nucleotidyltransferase (cgd2_2730), partial mRNA Length = 3489 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 3386 ctccaccgccaccacctcctc 3406
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 0.33 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 tcctctccgtccccgccgccgccac 29 ||||| ||||||||||||||||||| Sbjct: 20269330 tcctccccgtccccgccgccgccac 20269354 Score = 42.1 bits (21), Expect = 0.33 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 12 cgtccccgccgccgccacgctccaccgccaccacctc 48 |||||||||||||||| | | |||||||||||||||| Sbjct: 9389571 cgtccccgccgccgccgc-cgccaccgccaccacctc 9389606 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cacgctccaccgccaccacc 46 |||||||||||||||||||| Sbjct: 8634121 cacgctccaccgccaccacc 8634140
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 31341952 ctccaccgccaccacctcctc 31341932 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 cgccgccgccacgctccaccgcc 40 ||||||||| ||||||||||||| Sbjct: 313068 cgccgccgctacgctccaccgcc 313090
>dbj|AP003076.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0481E12 Length = 161563 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 96235 ctccaccgccaccacctcctc 96215
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 1293626 ctccaccgccaccacctcctc 1293606 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gcggcgatggccacggcggtg 114 ||||||||||||||||||||| Sbjct: 497243 gcggcgatggccacggcggtg 497223 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1002919 ctccaccgccaccacctcc 1002901
>gb|AF225319.1|AF225319 Bonasa umbellus clone C3 endogenous ASLV retrovirus gag polyprotein (gag) gene, partial cds Length = 885 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 acctcctctgcccctcctcct 64 ||||||||||||||||||||| Sbjct: 464 acctcctctgcccctcctcct 484
>dbj|AP005681.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1439_F07 Length = 153743 Score = 42.1 bits (21), Expect = 0.33 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 tcctctccgtccccgccgccgccac 29 ||||| ||||||||||||||||||| Sbjct: 48457 tcctccccgtccccgccgccgccac 48481
>dbj|AP005864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0047P18 Length = 169128 Score = 42.1 bits (21), Expect = 0.33 Identities = 24/25 (96%) Strand = Plus / Plus Query: 5 tcctctccgtccccgccgccgccac 29 ||||| ||||||||||||||||||| Sbjct: 162830 tcctccccgtccccgccgccgccac 162854
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBb0024J13 Length = 127614 Score = 42.1 bits (21), Expect = 0.33 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Plus Query: 12 cgtccccgccgccgccacgctccaccgccaccacctc 48 |||||||||||||||| | | |||||||||||||||| Sbjct: 72985 cgtccccgccgccgccgc-cgccaccgccaccacctc 73020
>dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L03, full insert sequence Length = 1419 Score = 42.1 bits (21), Expect = 0.33 Identities = 34/37 (91%), Gaps = 1/37 (2%) Strand = Plus / Minus Query: 12 cgtccccgccgccgccacgctccaccgccaccacctc 48 |||||||||||||||| | | |||||||||||||||| Sbjct: 133 cgtccccgccgccgccgc-cgccaccgccaccacctc 98
>dbj|AK071877.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040J18, full insert sequence Length = 2218 Score = 42.1 bits (21), Expect = 0.33 Identities = 24/25 (96%) Strand = Plus / Minus Query: 5 tcctctccgtccccgccgccgccac 29 ||||| ||||||||||||||||||| Sbjct: 997 tcctccccgtccccgccgccgccac 973
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcctc 51 ||||||||||||||||||||| Sbjct: 970822 ctccaccgccaccacctcctc 970802 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gcggcgatggccacggcggtg 114 ||||||||||||||||||||| Sbjct: 147732 gcggcgatggccacggcggtg 147712 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 675911 ctccaccgccaccacctcc 675893
>dbj|D37928.1|TTHASKAB Thermus flavus askA askB and gpt genes for aspartokinase alpha-2 beta-2 and purine phosphoribosyltransferase, complete cds Length = 2051 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gcggcgatggccacggcggtg 114 ||||||||||||||||||||| Sbjct: 692 gcggcgatggccacggcggtg 672
>dbj|AB013131.1| Thermus thermophilus gene for aspartate kinase alpha subunit, aspartate kinase beta subunit, complete cds Length = 1646 Score = 42.1 bits (21), Expect = 0.33 Identities = 21/21 (100%) Strand = Plus / Minus Query: 94 gcggcgatggccacggcggtg 114 ||||||||||||||||||||| Sbjct: 692 gcggcgatggccacggcggtg 672
>ref|NM_120859.2| Arabidopsis thaliana actin binding AT5G07770 mRNA, complete cds Length = 2658 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 2299 gctccaccgccaccacctcc 2318 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 2119 gctccaccgccaccacctcc 2138
>gb|U64609.2| Caenorhabditis elegans cosmid T28H11, complete sequence Length = 25403 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 22309 gctccaccgccaccacctcc 22290
>ref|XM_512199.1| PREDICTED: Pan troglodytes AFG3 ATPase family gene 3-like 2 (LOC455507), mRNA Length = 4173 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 1956 tccaccgccaccacctcctc 1937
>gb|AC164094.5| Mus musculus BAC clone RP23-133F10 from chromosome 6, complete sequence Length = 216271 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 214937 cctcctctgcccctcctcct 214918
>gb|AC115697.19| Mus musculus chromosome 7, clone RP24-233E11, complete sequence Length = 161690 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 117257 cctcctctgcccctcctcct 117276
>ref|NM_184603.1| Oryza sativa (japonica cultivar-group), mRNA Length = 537 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 3 cttcctctccgtccccgccgccgccacg 30 ||||||| |||||| ||||||||||||| Sbjct: 39 cttcctcgccgtcctcgccgccgccacg 66
>gb|AC084295.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015K03, complete sequence Length = 89172 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cttcctctccgtccccgccgccgccacg 30 ||||||| |||||| ||||||||||||| Sbjct: 60559 cttcctcgccgtcctcgccgccgccacg 60532
>gb|AC137002.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBb0061M13, complete sequence Length = 174910 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 gccgccgccacgctccaccgccaccacc 46 ||||||||||||||| ||||||||||| Sbjct: 161497 gccgccgccacgctcacccgccaccacc 161524
>gb|AF129756.1|DJ201G24 Homo sapiens MSH55 gene, partial cds; and CLIC1, DDAH, G6b, G6c, G5b, G6d, G6e, G6f, BAT5, G5b, CSK2B, BAT4, G4, Apo M, BAT3, BAT2, AIF-1, 1C7, LST-1, LTB, TNF, and LTA genes, complete cds Length = 184666 Score = 40.1 bits (20), Expect = 1.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 17 ccgccgccgccacgctccaccgccaccacctc 48 ||||||||||||| | |||||||||||||||| Sbjct: 129137 ccgccgccgccac-cgccaccgccaccacctc 129167
>gb|BC065016.1| Homo sapiens AFG3 ATPase family gene 3-like 2 (yeast), mRNA (cDNA clone MGC:70766 IMAGE:6169804), complete cds Length = 2973 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 464 tccaccgccaccacctcctc 445
>gb|AC112159.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_C01, complete sequence Length = 114236 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcctctgc 54 ||||||| |||||||||||||||| Sbjct: 50529 ctccaccaccaccacctcctctgc 50552
>gb|AC132488.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0522C01, complete sequence Length = 136120 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 gccgccgccacgctccaccgccaccacc 46 ||||||||||||||| ||||||||||| Sbjct: 19583 gccgccgccacgctcacccgccaccacc 19610
>gb|AC139376.3| Mus musculus BAC clone RP24-420A20 from chromosome 10, complete sequence Length = 184039 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 12320 cctcctctgcccctcctcct 12301
>gb|AC140482.2| Mus musculus BAC clone RP24-133E1 from chromosome 10, complete sequence Length = 154925 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 32460 cctcctctgcccctcctcct 32441
>ref|NM_006796.1| Homo sapiens AFG3 ATPase family gene 3-like 2 (yeast) (AFG3L2), nuclear gene encoding mitochondrial protein, mRNA Length = 2963 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 461 tccaccgccaccacctcctc 442
>gb|AC121264.8| Mus musculus chromosome 9, clone RP24-233F22, complete sequence Length = 194261 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 12206 cctcctctgcccctcctcct 12225
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cttcctctccgtccccgccgccgccacg 30 ||||||| |||||| ||||||||||||| Sbjct: 16066341 cttcctcgccgtcctcgccgccgccacg 16066314
>gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence Length = 31787 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 27536 gctccaccgccaccacctcc 27517
>gb|AC124563.4| Mus musculus BAC clone RP23-206B15 from chromosome 6, complete sequence Length = 210092 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 142312 cctcctctgcccctcctcct 142331
>gb|AC125350.3| Mus musculus BAC clone RP23-423B11 from chromosome 13, complete sequence Length = 205567 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 4644 cctcctctgcccctcctcct 4625
>gb|AC109247.14| Mus musculus chromosome 9, clone RP23-462C14, complete sequence Length = 225020 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 gccacgctccaccgccaccacctc 48 ||||| |||||||||||||||||| Sbjct: 141907 gccacactccaccgccaccacctc 141930
>gb|AC022616.9| Homo sapiens chromosome 8, clone RP11-726G23, complete sequence Length = 191821 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 79926 tccaccgccaccacctcctc 79945
>emb|BX511262.7| Human DNA sequence from clone DASS-336N12 on chromosome 6, complete sequence Length = 69009 Score = 40.1 bits (20), Expect = 1.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccaccacctc 48 ||||||||||||| | |||||||||||||||| Sbjct: 486 ccgccgccgccac-cgccaccgccaccacctc 456
>emb|BX248305.13| Human DNA sequence from clone DASS-82G15 on chromosome 6 Contains the UQCRHP1 pseudogene for ubiquinol-cytochrome c reductase hinge protein pseudogene 1, AIF1 gene for allograft inflammatory factor 1, the 5' end of the BAT2 gene for HLA-B associated transcript 2, and 1 CpG island, complete sequence Length = 16685 Score = 40.1 bits (20), Expect = 1.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccaccacctc 48 ||||||||||||| | |||||||||||||||| Sbjct: 15171 ccgccgccgccac-cgccaccgccaccacctc 15141
>emb|AL805934.3| Human DNA sequence from clone DAQB-195H10 on chromosome 6 Contains the AIF1 gene for allograft inflammatory factor 1, the BAT2 genes for HLA-B associated transcript 2, the BAT3 gene for HLA-B associated transcript 3, the APOM gene for apolipoprotein M, the C6orf47 gene for chromosome 6 open reading frame 47, the BAT4 gene for HLA-B associated transcript 4, the CSNK2B gene for casein kinase 2, beta polypeptide, the LY6G5B gene for lymphocyte antigen 6 complex, locus G5B, the bQB195H10.12 gene for a novel protein, the LY6G5C gene for lymphocyte antigen 6 complex, locus G5C, the BAT5 gene for HLA-B associated transcript 5, the 5' end for LY6G6D gene for lymphocyte antigen 6 complex, locus G6D and 7 CpG islands, complete sequence Length = 99109 Score = 40.1 bits (20), Expect = 1.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccaccacctc 48 ||||||||||||| | |||||||||||||||| Sbjct: 9411 ccgccgccgccac-cgccaccgccaccacctc 9381
>emb|AL662801.7| Human DNA sequence from clone XXbac-296P20 on chromosome 6 contains a ribosomal protein L15 (RPL15) pseudogene, the BAT1 gene for HLA-B associated transcript 1, the ATP6V1G gene for ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G, the NFKBIL1 gene for nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1, the LTA gene for lymphotoxin alpha, the TNF gene for tumour necrosis factor, the LTB gene for lymphotoxin beta, the LST1 gene for leukocyte specific transcript 1, the LY117 gene for lymphocyte antigen 117, the AIF1 gene for alograft imflammatory factor 1, the BAT2 gene for HLA-B associated transcript 2, the BAT3 gene for HLA-B associated transcript 3, the APOM gene for apolipoprotein M, the 3' end of the gene for chromosome 6, open reading frame 47 and four CpG islands, complete sequence Length = 132330 Score = 40.1 bits (20), Expect = 1.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccaccacctc 48 ||||||||||||| | |||||||||||||||| Sbjct: 93606 ccgccgccgccac-cgccaccgccaccacctc 93576
>emb|AL662847.6| Human DNA sequence from clone XXbac-270M2 on chromosome 6 contains the gene for a novel protein similar to similar to peptidyl-prolyl cis-trans isomerase A (PPIase), a ribosomal protein L15 (RPL15) pseudogene, the BAT1 gene for HLA-B associated transcript 1, the ATP6V1G gene for ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G, the NFKBIL1 gene for nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1, the LTA gene for lymphotoxin alpha, the TNF gene for tumour necrosis factor, the LTB gene for lymphotoxin beta, the LST1 gene for leukocyte specific transcript 1, the LY117 gene for lymphocyte antigen 117, the AIF1 gene for alograft imflammatory factor 1, the BAT2 gene for HLA-B associated transcript 2, the 3' end of the BAT3 gene for HLA-B associated transcript 3 and two CpG islands, complete sequence Length = 135784 Score = 40.1 bits (20), Expect = 1.3 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccaccacctc 48 ||||||||||||| | |||||||||||||||| Sbjct: 107373 ccgccgccgccac-cgccaccgccaccacctc 107343
>emb|AL117338.15|HSA490O24 Human DNA sequence from clone RP11-490O24 on chromosome 10 Contains a 60S ribosomal protein L23 (RPL23) pseudogene and a novel gene, complete sequence Length = 168778 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 56366 cctcctctgcccctcctcct 56347
>emb|Y18314.1|HSAP18314 Homo sapiens mRNA for paraplegin-like protein Length = 2963 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 461 tccaccgccaccacctcctc 442
>emb|Y13986.1|OCGTPBPR Ostertagia circumcincta mRNA for GTP-binding protein Length = 450 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcct 50 |||||||||||||||||||| Sbjct: 184 ctccaccgccaccacctcct 165
>emb|BX883043.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 2/11 Length = 347664 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 236642 cctcctctgcccctcctcct 236661 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 236625 cctcctctgcccctcctcct 236644
>emb|AL663087.14| Mouse DNA sequence from clone RP23-431M5 on chromosome 11 Contains the 5' end of the Grb10 gene for growth factor receptor bound protein 10, a nucleosome assembly protein 1-like 1 (Nap1l1) pseudogene and three CpG islands, complete sequence Length = 174389 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 164712 cctcctctgcccctcctcct 164731
>emb|CR597170.1| full-length cDNA clone CS0DK008YD01 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 2952 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 485 tccaccgccaccacctcctc 466
>dbj|AK134997.1| Mus musculus adult male olfactory brain cDNA, RIKEN full-length enriched library, clone:6430538O05 product:carbohydrate (keratan sulfate Gal-6) sulfotransferase 1, full insert sequence Length = 2552 Score = 40.1 bits (20), Expect = 1.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 19 gccgccgccacgctccaccgccaccacc 46 ||||||||||| |||||||||||||||| Sbjct: 202 gccgccgccac-ctccaccgccaccacc 228
>gb|BC024282.1| Homo sapiens, Similar to AFG3 ATPase family gene 3-like 2 (yeast), clone IMAGE:4840336, mRNA, partial cds Length = 2908 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 395 tccaccgccaccacctcctc 376
>gb|AC135862.4| Mus musculus BAC clone RP23-323B2 from chromosome 10, complete sequence Length = 203324 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 36739 cctcctctgcccctcctcct 36758
>gb|AC068561.2|AC068561 Mus musculus strain C57BL6/J chromosome 6 clone RP23-86H7, complete sequence Length = 230839 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cacctcctctgcccctcctc 62 |||||||||||||||||||| Sbjct: 176444 cacctcctctgcccctcctc 176425
>ref|NM_068712.2| Caenorhabditis elegans Sperm-Specific family, class Q family member (ssq-3) (ssq-3) mRNA, complete cds Length = 1133 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 1003 gctccaccgccaccacctcc 984
>gb|AF162137.2|AF162137 Mus musculus WNT-2 gene, partial cds; putative ankyrin-related protein and cystic fibrosis transmembrane conductance regulator (CFTR) genes, complete cds; and unknown gene Length = 357856 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cacctcctctgcccctcctc 62 |||||||||||||||||||| Sbjct: 9393 cacctcctctgcccctcctc 9374
>ref|NM_068303.3| Caenorhabditis elegans Sperm-Specific family, class Q family member (ssq-4) (ssq-4) mRNA, complete cds Length = 1167 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 1032 gctccaccgccaccacctcc 1013
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgcc 40 |||||||||| ||||||||||||| Sbjct: 30267725 ccgccgccgctacgctccaccgcc 30267702
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 ccgccgccacgctccaccgccacc 43 ||||||||||||||| |||||||| Sbjct: 28810712 ccgccgccacgctcctccgccacc 28810735 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 29 cgctccaccgccaccacctcctc 51 ||||||||| ||||||||||||| Sbjct: 21919278 cgctccacctccaccacctcctc 21919300 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 4026948 ctccgtccccgccgccgcc 4026966
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcctctgc 54 ||||||| |||||||||||||||| Sbjct: 22851825 ctccaccaccaccacctcctctgc 22851848 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 19 gccgccgccacgctccaccgccaccacc 46 ||||||||||||||| ||||||||||| Sbjct: 10992293 gccgccgccacgctcacccgccaccacc 10992320 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 cctctccgtccccgccgcc 24 ||||||||||||||||||| Sbjct: 19670351 cctctccgtccccgccgcc 19670333 Score = 38.2 bits (19), Expect = 5.2 Identities = 28/31 (90%) Strand = Plus / Plus Query: 17 ccgccgccgccacgctccaccgccaccacct 47 ||||||||||| ||| ||||| ||||||||| Sbjct: 2884023 ccgccgccgccgcgcaccaccaccaccacct 2884053
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 3 cttcctctccgtccccgccgccgccacg 30 ||||||| |||||| ||||||||||||| Sbjct: 16060874 cttcctcgccgtcctcgccgccgccacg 16060847
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgcc 40 |||||||||| ||||||||||||| Sbjct: 19663150 ccgccgccgctacgctccaccgcc 19663127 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 5 tcctctccgtccccgccgccgcc 27 ||||| ||||||||||||||||| Sbjct: 15585538 tcctcgccgtccccgccgccgcc 15585516 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 cgccgccgccacgctccaccgcc 40 ||||||||| ||||||||||||| Sbjct: 9147776 cgccgccgctacgctccaccgcc 9147798 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 cgccgccgccacgctccaccgcc 40 ||||||||| ||||||||||||| Sbjct: 7016788 cgccgccgctacgctccaccgcc 7016766 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccaccacctcctc 51 ||||||||||| | ||||||| ||||||||||||| Sbjct: 4171210 ccgccgccgccgc-ctccaccaccaccacctcctc 4171177
>gb|AC116482.11| Mus musculus chromosome 8, clone RP23-423D8, complete sequence Length = 202027 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 40956 cctcctctgcccctcctcct 40937
>gb|AC091713.4| Papio anubis clone RP41-217F22, complete sequence Length = 215961 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccgccaccacctcctctgcc 55 |||||||||||||||||||| Sbjct: 128299 ccgccaccacctcctctgcc 128318
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 ccgccgccacgctccaccgccacc 43 ||||||||||||||| |||||||| Sbjct: 118487 ccgccgccacgctcctccgccacc 118510
>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0057D11 Length = 190790 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 cacgctccaccgccaccacc 46 |||||||||||||||||||| Sbjct: 63917 cacgctccaccgccaccacc 63936
>gb|AC158647.2| Mus musculus 6 BAC RP23-275N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 208007 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 cacctcctctgcccctcctc 62 |||||||||||||||||||| Sbjct: 102982 cacctcctctgcccctcctc 102963
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1136H02 Length = 145086 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgcc 40 |||||||||| ||||||||||||| Sbjct: 19908 ccgccgccgctacgctccaccgcc 19885
>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0605D08 Length = 144340 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgcc 40 |||||||||| ||||||||||||| Sbjct: 129436 ccgccgccgctacgctccaccgcc 129413
>dbj|AB005249.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXM12 Length = 83599 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 1294 gctccaccgccaccacctcc 1313 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 gctccaccgccaccacctcc 49 |||||||||||||||||||| Sbjct: 1114 gctccaccgccaccacctcc 1133
>emb|Y15423.1|PSLOX1PSD Pisum sativum pseudogene homologous to lipoxygenase Length = 4880 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 242 tccaccgccaccacctcctc 261
>dbj|AK106650.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F09, full insert sequence Length = 1720 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 gtccccgccgccgccacgctccaccgcc 40 ||||||||||||||| | |||||||||| Sbjct: 261 gtccccgccgccgccgccctccaccgcc 234
>gb|AC120394.10| Mus musculus chromosome 9, clone RP24-325N9, complete sequence Length = 206641 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 156006 cctcctctgcccctcctcct 156025
>emb|CR974457.17| Mouse DNA sequence from clone RP23-319E15 on chromosome 17, complete sequence Length = 124639 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 65152 cctcctctgcccctcctcct 65171
>gb|AC174763.1| Gasterosteus aculeatus clone VMRC28-119C03, complete sequence Length = 138567 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 ctctccgtccccgccgccgc 26 |||||||||||||||||||| Sbjct: 88412 ctctccgtccccgccgccgc 88393
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 13 gtccccgccgccgccacgctccaccgcc 40 ||||||||||||||| | |||||||||| Sbjct: 5077020 gtccccgccgccgccgccctccaccgcc 5077047 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 ccgccgccacgctccaccgccac 42 |||||||||| |||||||||||| Sbjct: 1425037 ccgccgccactctccaccgccac 1425059 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 777563 ctccgtccccgccgccgcc 777581
>emb|AL607004.4|OSJN00129 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNba0093F12, complete sequence Length = 186142 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgcc 40 |||||||||| ||||||||||||| Sbjct: 164026 ccgccgccgctacgctccaccgcc 164003
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgcc 40 |||||||||| ||||||||||||| Sbjct: 17621 ccgccgccgctacgctccaccgcc 17598
>gb|AF050157.1|MMHC135G15 Mus musculus major histocompatibility locus class II region: major histocompatibility protein class II alpha chain (IAalpha) and major histocompatibility protein class II beta chain (IEbeta) genes, complete cds; butyrophilin-like (NG9), butyrophilin-like (NG10), hypothetical protein (NG8), and butyrophilin-like (NG11) genes, partial cds; NG12 pseudogene, partial sequence; and hypothetical butyrophilin-like protein (NG13) gene, partial cds Length = 245439 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 106320 cctcctctgcccctcctcct 106339
>gb|AC122346.4| Mus musculus BAC clone RP23-368L6 from 13, complete sequence Length = 198130 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 cctcctctgcccctcctcct 64 |||||||||||||||||||| Sbjct: 159818 cctcctctgcccctcctcct 159799
>dbj|AP001029.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-861E21, complete sequence Length = 209897 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 10465 tccaccgccaccacctcctc 10484
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 cggcgatggccacggcggtg 114 |||||||||||||||||||| Sbjct: 3425421 cggcgatggccacggcggtg 3425440
>dbj|AP007285.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01H08, TM0053, complete sequence Length = 109326 Score = 40.1 bits (20), Expect = 1.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 22 gccgccacgctccaccgccaccacctcc 49 |||||||| ||||||| ||||||||||| Sbjct: 97230 gccgccaccctccaccaccaccacctcc 97257
>emb|AL683814.10| Mouse DNA sequence from clone RP23-165L23 on chromosome 2, complete sequence Length = 191052 Score = 40.1 bits (20), Expect = 1.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 19 gccgccgccacgctccaccgccaccacc 46 ||||||||||| |||||||||||||||| Sbjct: 170784 gccgccgccac-ctccaccgccaccacc 170810
>emb|AL132992.4|CNS01DTZ Human chromosome 14 DNA sequence BAC C-2268P10 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 133186 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 51 ctgcccctcctcctactcat 70 |||||||||||||||||||| Sbjct: 127582 ctgcccctcctcctactcat 127601
>gb|L03399.1|ZEFRARA2B Zebrafish retinoic acid receptor alpha 2.B (RAR-alpha-2.B) mRNA, complete cds Length = 2539 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 tccaccgccaccacctcctc 51 |||||||||||||||||||| Sbjct: 1480 tccaccgccaccacctcctc 1461
>ref|NM_112981.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT3G20890 mRNA, complete cds Length = 1105 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 749 ctccaccgccaccacctcc 731
>ref|NM_120029.2| Arabidopsis thaliana GRP2; nucleic acid binding AT4G38680 (GRP2) mRNA, complete cds Length = 1299 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 878 ccccgccgccaccac-ctccacggccaccacctcc 845
>ref|NM_124043.2| Arabidopsis thaliana unknown protein AT5G46730 mRNA, complete cds Length = 1057 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 664 ctccaccgccaccacctcc 646
>gb|AY722405.1| Drosophila yakuba paired-type homeodomain protein (unc-4) mRNA, partial cds Length = 1074 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 521 ccaccgccaccacctcctc 503
>gb|AY722404.1| Drosophila sechellia paired-type homeodomain protein (unc-4) mRNA, partial cds Length = 1246 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 744 ccaccgccaccacctcctc 726
>gb|AY722403.1| Drosophila mauritiana paired-type homeodomain protein (unc-4) mRNA, partial cds Length = 1246 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 744 ccaccgccaccacctcctc 726
>gb|AY722402.1| Drosophila simulans paired-type homeodomain protein (unc-4) mRNA, partial cds Length = 1246 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 744 ccaccgccaccacctcctc 726
>ref|NM_183482.1| Oryza sativa (japonica cultivar-group), mRNA Length = 531 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 cgccgccgccacgctccaccgcc 40 ||||||||| ||||||||||||| Sbjct: 425 cgccgccgctacgctccaccgcc 447
>gb|AC167978.4| Mus musculus BAC clone RP23-72M20 from chromosome 7, complete sequence Length = 214959 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 17 ccgccgccgccacgctccaccgccaccacctcctc 51 ||||||||||||| ||||||| |||||||| |||| Sbjct: 17029 ccgccgccgccac-ctccacctccaccaccacctc 17062
>gb|AC161248.2| Mus musculus BAC clone RP24-530L5 from chromosome 12, complete sequence Length = 155861 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcc 63 ||||||||||||||||||| Sbjct: 89083 cctcctctgcccctcctcc 89101
>ref|XM_510277.1| PREDICTED: Pan troglodytes similar to Cell death regulator Aven (LOC453297), mRNA Length = 992 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 231 ctccgtccccgccgccgcc 213
>ref|XM_481113.1| Oryza sativa (japonica cultivar-group), mRNA Length = 240 Score = 38.2 bits (19), Expect = 5.2 Identities = 25/27 (92%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccacc 43 ||||||||||| | ||||||||||||| Sbjct: 53 ccgccgccgccgctctccaccgccacc 27
>ref|XM_475210.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1002 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 cctctccgtccccgccgcc 24 ||||||||||||||||||| Sbjct: 346 cctctccgtccccgccgcc 328
>ref|XM_507707.1| PREDICTED: Pan troglodytes similar to hNap1 Binding Protein (LOC450363), mRNA Length = 1562 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1103 ctccaccgccaccacctcc 1121
>ref|NM_195378.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0041L14.21), mRNA Length = 612 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 7 ctctccgtccccgccgccgccac 29 ||||||||| ||||||||||||| Sbjct: 570 ctctccgtcaccgccgccgccac 548
>ref|XM_465492.1| Oryza sativa (japonica cultivar-group), mRNA Length = 961 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 5 tcctctccgtccccgccgccgcc 27 ||||| ||||||||||||||||| Sbjct: 116 tcctcgccgtccccgccgccgcc 138
>ref|XM_506799.1| PREDICTED Oryza sativa (japonica cultivar-group), P0644G05.32-1 mRNA Length = 981 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 5 tcctctccgtccccgccgccgcc 27 ||||| ||||||||||||||||| Sbjct: 99 tcctcgccgtccccgccgccgcc 121
>ref|NM_197688.1| Oryza sativa (japonica cultivar-group) putative oxysterol-binding protein (OSJNBb0014I11.10), mRNA Length = 2229 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 151 ccaccgccaccacctcctc 133
>ref|NM_196780.1| Oryza sativa (japonica cultivar-group) putative glycine-rich protein (OSJNBa0068N06.29), mRNA Length = 693 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 229 ctccaccgccaccacctcc 211
>ref|XM_479463.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2149 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 tctccgtccccgccgccgc 26 ||||||||||||||||||| Sbjct: 189 tctccgtccccgccgccgc 207
>gb|AY787834.1| Homo sapiens superoxide dismutase 3, extracellular (SOD3) gene, complete cds Length = 10019 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 ccacctcctctgcccctcc 60 ||||||||||||||||||| Sbjct: 2621 ccacctcctctgcccctcc 2603
>gb|BT019395.1| Synthetic construct Homo sapiens spectrin SH3 domain binding protein 1 mRNA, partial cds Length = 1269 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 923 ctccaccgccaccacctcc 941
>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07, complete sequence Length = 164898 Score = 38.2 bits (19), Expect = 5.2 Identities = 28/31 (90%) Strand = Plus / Plus Query: 17 ccgccgccgccacgctccaccgccaccacct 47 ||||||||||| ||| ||||| ||||||||| Sbjct: 78634 ccgccgccgccgcgcaccaccaccaccacct 78664
>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence Length = 1590432 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 138000 ccaccgccaccacctcctc 138018
>gb|AC159449.1| Trypanosoma brucei chromosome 4 clone RPCI93-5D20, complete sequence Length = 162975 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 138000 ccaccgccaccacctcctc 138018
>gb|BC081178.1| Xenopus laevis MGC84356 protein, mRNA (cDNA clone MGC:84356 IMAGE:6958745), complete cds Length = 1685 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 34 caccgccaccacctcctctgccc 56 |||||||||||||||||| |||| Sbjct: 1291 caccgccaccacctcctccgccc 1313
>gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complete sequence Length = 169856 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 97998 ccaccgccaccacctcctc 98016
>gb|AY323823.1| Chlamydomonas reinhardtii isoamylase (Isa1) gene, complete cds Length = 11545 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 9658 ccaccgccaccacctcctc 9676
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 96 ggcgatggccacggcggtg 114 ||||||||||||||||||| Sbjct: 592071 ggcgatggccacggcggtg 592089
>gb|AC116393.10| Mus musculus chromosome 15, clone RP23-94I16, complete sequence Length = 217156 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ccaccacctcctctgcccc 57 ||||||||||||||||||| Sbjct: 37828 ccaccacctcctctgcccc 37846
>ref|XM_360063.1| Magnaporthe grisea 70-15 hypothetical protein (MG05438.4) partial mRNA Length = 1044 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 917 ccaccgccaccacctcctc 899
>ref|XM_427028.1| PREDICTED: Gallus gallus similar to bM340H1.8.2 (novel protein, variant 2 (1110035G07Rik)) (LOC429472), partial mRNA Length = 1198 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 610 ctccaccgccaccacctcc 628
>gb|AY429017.1| Oryza sativa (japonica cultivar-group) ANTHER INDEHISCENCE1 (AID1) mRNA, complete cds Length = 1630 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 60 ctccgtccccgccgccgcc 78
>gb|BC063533.1| Homo sapiens apoptosis, caspase activation inhibitor, mRNA (cDNA clone MGC:74954 IMAGE:4425400), complete cds Length = 1535 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 182 ctccgtccccgccgccgcc 164
>gb|BC007636.1| Homo sapiens chromosome 20 open reading frame 100, mRNA (cDNA clone MGC:15880 IMAGE:3529159), complete cds Length = 2533 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 cgtccccgccgccgccacgctcc 34 |||||||||||||||||| |||| Sbjct: 1231 cgtccccgccgccgccaccctcc 1253
>gb|BC026062.2| Homo sapiens fusion (involved in t(12;16) in malignant liposarcoma), mRNA (cDNA clone MGC:16383 IMAGE:3937437), complete cds Length = 1825 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1313 ctccaccgccaccacctcc 1295
>gb|AC105319.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1657_H11, complete sequence Length = 98103 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 cctctccgtccccgccgcc 24 ||||||||||||||||||| Sbjct: 35360 cctctccgtccccgccgcc 35342
>ref|NM_015496.3| Homo sapiens KIAA1429 (KIAA1429), transcript variant 1, mRNA Length = 5786 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 441 ctccaccgccaccacctcc 459
>ref|XM_655701.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3189.2), mRNA Length = 5181 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 37 cgccaccacctcctctgcccctc 59 |||||| |||||||||||||||| Sbjct: 4495 cgccacaacctcctctgcccctc 4517
>ref|NM_020371.2| Homo sapiens apoptosis, caspase activation inhibitor (AVEN), mRNA Length = 1551 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 198 ctccgtccccgccgccgcc 180
>ref|NM_183009.1| Homo sapiens KIAA1429 (KIAA1429), transcript variant 2, mRNA Length = 3642 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 441 ctccaccgccaccacctcc 459
>ref|NM_032883.1| Homo sapiens chromosome 20 open reading frame 100 (C20orf100), mRNA Length = 2533 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 cgtccccgccgccgccacgctcc 34 |||||||||||||||||| |||| Sbjct: 1231 cgtccccgccgccgccaccctcc 1253
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 46 ctcctctgcccctcctcctactc 68 ||||||||| ||||||||||||| Sbjct: 1118110 ctcctctgctcctcctcctactc 1118132
>ref|XM_751927.1| Ustilago maydis 521 hypothetical protein (UM00873.1) partial mRNA Length = 3225 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 2450 ccaccgccaccacctcctc 2432
>ref|XM_819754.1| Trypanosoma brucei TREU927 clone RPCI93-5D20 snoRNP protein Gar1 (Tb927.4.470) partial mRNA Length = 690 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 146 ccaccgccaccacctcctc 128
>ref|XM_747239.1| Aspergillus fumigatus Af293 GPI anchored protein (Afu1g09650) partial mRNA Length = 1215 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 783 ctccaccgccaccacctcc 801
>ref|XM_382389.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG02213.1) partial mRNA Length = 399 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 388 ctccaccgccaccacctcc 370
>emb|AM048812.1| Platynereis dumerilii mRNA for vasa homlogue (vasa gene) Length = 2848 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 299 ccaccgccaccacctcctc 281
>emb|CR936368.12| M.truncatula DNA sequence from clone MTH2-4O11 on chromosome 3, complete sequence Length = 140262 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctctgcc 55 |||||||||||||| |||||||| Sbjct: 29368 ccaccgccaccaccacctctgcc 29390
>gb|BC051293.1| Homo sapiens fusion (involved in t(12;16) in malignant liposarcoma), mRNA (cDNA clone IMAGE:3609275), with apparent retained intron Length = 782 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 264 ctccaccgccaccacctcc 246
>gb|BC058764.1| Mus musculus RIKEN cDNA G430041M01 gene, mRNA (cDNA clone IMAGE:6490816), partial cds Length = 2128 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 1136 ccaccgccaccacctcctc 1118
>ref|XM_760767.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0333) partial mRNA Length = 681 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 17 ccgccgccgccacgctccaccgccaccacctcctc 51 ||||| ||||||| ||||||| ||||||||||||| Sbjct: 454 ccgcctccgccac-ctccacctccaccacctcctc 487
>gb|BC058513.1| Mus musculus U1 small nuclear ribonucleoprotein polypeptide A, mRNA (cDNA clone IMAGE:6822369), partial cds Length = 1206 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 653 ccaccgccaccacctcctc 635
>gb|AC101677.8| Mus musculus chromosome 10, clone RP23-138N1, complete sequence Length = 206087 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcc 63 ||||||||||||||||||| Sbjct: 43722 cctcctctgcccctcctcc 43740
>gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete sequence Length = 123357 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctctgcc 55 ||||||||| ||||||||||||| Sbjct: 105804 ccaccgccatcacctcctctgcc 105826
>gb|AC109612.22| Mus musculus strain C57BL/6J clone rp23-37i3 map 17, complete sequence Length = 179382 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 105789 ccaccgccaccacctcctc 105807
>gb|AC148237.7| Medicago truncatula clone mth2-1o14, complete sequence Length = 116678 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 109004 ctccaccgccaccacctcc 108986
>gb|BC023018.1| Mus musculus cDNA clone IMAGE:5369936, **** WARNING: chimeric clone **** Length = 1229 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 251 ccaccgccaccacctcctc 233
>ref|NM_001012752.1| Homo sapiens abl-interactor 1 (ABI1), transcript variant 4, mRNA Length = 3572 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1252 ctccaccgccaccacctcc 1270
>ref|NM_005470.2| Homo sapiens abl-interactor 1 (ABI1), transcript variant 1, mRNA Length = 3668 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1348 ctccaccgccaccacctcc 1366
>ref|NM_001012751.1| Homo sapiens abl-interactor 1 (ABI1), transcript variant 3, mRNA Length = 3500 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1180 ctccaccgccaccacctcc 1198
>ref|NM_001012750.1| Homo sapiens abl-interactor 1 (ABI1), transcript variant 2, mRNA Length = 3587 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1267 ctccaccgccaccacctcc 1285
>gb|BC094067.1| Mus musculus U1 small nuclear ribonucleoprotein polypeptide A, mRNA (cDNA clone IMAGE:4457590), with apparent retained intron Length = 1355 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 804 ccaccgccaccacctcctc 786
>emb|AL672237.1| Human DNA sequence from clone RP11-293G6 on chromosome 1 Contains the 3' end of the TBCE gene for tubulin-specific chaperone e protein and the 3' end of a gene for beta 1,3-N-acetylgalactosaminyltransferase-II (MGC39558) protein, complete sequence Length = 42380 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 46 ctcctctgcccctcctcct 64 ||||||||||||||||||| Sbjct: 16012 ctcctctgcccctcctcct 15994
>emb|AL390961.17| Human DNA sequence from clone RP13-16H11 on chromosome 10 Contains three novel genes, the gene for trans-prenyltransferase (TPT), the 3' end of the SSH3BP gene for spectrin SH3 domain binding protein 1, a heat shock protein pseudogene and a CpG island, complete sequence Length = 173950 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 140726 ctccaccgccaccacctcc 140708
>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete sequence Length = 175757 Score = 38.2 bits (19), Expect = 5.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 25 gccacgctccaccgccaccacctcctc 51 ||||| ||||||| ||||||||||||| Sbjct: 35414 gccactctccaccaccaccacctcctc 35440
>emb|AL353705.23| Human DNA sequence from clone RP11-336N8 on chromosome 9q21.11-21.31 Contains a synaptogyrin 2 (SYNGR2) pseudogene, an argininosuccinate synthetase (ASS) pseudogene, a ribosomal protein L21 (RPL21) pseudogene, a CDC28 protein kinase regulatory subunit 2 (CKS2) pseudogene, the C9orf81 gene for chromosome 9 open reading frame 81 and a CpG island, complete sequence Length = 166372 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 ccgccaccacctcctctgc 54 ||||||||||||||||||| Sbjct: 106922 ccgccaccacctcctctgc 106904
>emb|AL353719.10| Human DNA sequence from clone RP11-85A1 on chromosome 10 Contains the NKX2-3 gene for NK2 transcription factor related, locus 3 (Drosophila), the gene for putative mitochondrial solute carrier (MRS3/4) and five CpG islands, complete sequence Length = 123160 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctctgcc 55 |||||||||||||| |||||||| Sbjct: 78409 ccaccgccaccaccacctctgcc 78387
>ref|XM_787257.1| PREDICTED: Strongylocentrotus purpuratus similar to CG32030-PA, isoform A (LOC587533), partial mRNA Length = 2250 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 30 gctccaccgccaccacctcctct 52 ||||||||||||||||| ||||| Sbjct: 1306 gctccaccgccaccaccacctct 1328
>gb|AC023951.19| Homo sapiens chromosome 15, clone RP11-815C16, complete sequence Length = 186341 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 37264 ctccgtccccgccgccgcc 37246
>gb|AY145471.1| Rachiplusia ou multiple nucleopolyhedrovirus, complete genome Length = 131526 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 5028 ccaccgccaccacctcctc 5010
>emb|AL034419.22|HS1108D11 Human DNA sequence from clone RP5-1108D11 on chromosome 20q12-13.11 Contains the 3' end of the JPH2 gene for junctophilin 2 (JP2, JP-2), the 3' end of the C20orf100 gene for a novel HMG (high mobility group) box protein similar to KIAA0737, KIAA0808 and TNRC9 (CAGF9) and two CpG islands, complete sequence Length = 152209 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 cgtccccgccgccgccacgctcc 34 |||||||||||||||||| |||| Sbjct: 54581 cgtccccgccgccgccaccctcc 54603
>gb|AC123516.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0035B18, complete sequence Length = 123425 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 20 ccgccgccacgctccaccgccac 42 |||||||||| |||||||||||| Sbjct: 46111 ccgccgccactctccaccgccac 46133
>gb|AC123514.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence Length = 121223 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 55854 ctccgtccccgccgccgcc 55872
>emb|AL022476.2|HS323M22 Human DNA sequence from clone RP3-323M22 on chromosome 22, complete sequence Length = 194523 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 50275 ccaccgccaccacctcctc 50293
>emb|X76108.1|AASPAA A.anguilla mRNA for sodium/potassium ATPase, alpha subunit Length = 3307 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 36 ccgccaccacctcctctgc 54 ||||||||||||||||||| Sbjct: 671 ccgccaccacctcctctgc 653
>emb|X71428.1|HSFUSA Homo sapiens mRNA for FUS gycline rich protein Length = 1822 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1324 ctccaccgccaccacctcc 1306
>gb|AY040049.1| Arabidopsis thaliana putative glycine-rich protein 2 (At4g38680) mRNA, complete cds Length = 612 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 547 ccccgccgccaccac-ctccacggccaccacctcc 514
>gb|AF360202.1| Arabidopsis thaliana putative glycine-rich protein GRP2 (At4g38680) mRNA, complete cds Length = 929 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 621 ccccgccgccaccac-ctccacggccaccacctcc 588
>emb|X13057.1|GGP53 Chicken mRNA for nuclear oncoprotein p53 Length = 1555 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctctgcc 55 |||||||||||||| |||||||| Sbjct: 217 ccaccgccaccaccacctctgcc 239
>emb|CR860235.1| Pongo pygmaeus mRNA; cDNA DKFZp469P1319 (from clone DKFZp469P1319) Length = 2342 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1179 ctccaccgccaccacctcc 1197
>gb|AC099042.9| Oryza sativa chromosome 10 BAC OSJNBa0041L14 genomic sequence, complete sequence Length = 158742 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 7 ctctccgtccccgccgccgccac 29 ||||||||| ||||||||||||| Sbjct: 95765 ctctccgtcaccgccgccgccac 95787
>emb|CR456747.1| Homo sapiens full open reading frame cDNA clone RZPDo834F0214D for gene FUS, fusion (involved in t(12;16) in malignant liposarcoma); complete cds, incl. stopcodon Length = 1581 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1255 ctccaccgccaccacctcc 1237
>gb|AC069045.11| Homo sapiens chromosome 15, clone RP11-111C2, complete sequence Length = 154859 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 109304 ctccgtccccgccgccgcc 109322
>gb|AC141587.2| Homo sapiens chromosome 16 clone RP11-1046E19, complete sequence Length = 186890 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 107720 ctccgtccccgccgccgcc 107738
>emb|AL161593.2|ATCHRIV89 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89 Length = 199789 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 181247 ccccgccgccaccac-ctccacggccaccacctcc 181280
>emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BAC clone F7M19 Length = 99291 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 52516 ctccaccgccaccacctcc 52498
>emb|AL035656.1|ATT9A14 Arabidopsis thaliana DNA chromosome 4, BAC clone T9A14 (ESSA project) Length = 88164 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 18874 ccccgccgccaccac-ctccacggccaccacctcc 18907
>emb|AJ549096.1|HSA549096 Homo sapiens t(7;16)(q33;p11) translocation breakpoint mRNA for partial chimaeric BBF2H7/FUS protein, isolate patient 1, short variant Length = 478 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 460 ctccaccgccaccacctcc 442
>emb|AJ289859.2|LFL289859 Lampetra fluviatilis partial mRNA for keratin alpha Length = 2843 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 cgctccaccgccaccacctcctc 51 ||||||||||||||| ||||||| Sbjct: 460 cgctccaccgccaccgcctcctc 438
>gb|BT008615.1| Arabidopsis thaliana clone RAFL15-50-L08 (R50171) unknown protein (At5g46730) mRNA, complete cds Length = 1076 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 664 ctccaccgccaccacctcc 646
>emb|AJ000671.1|SCAJ671 Streptomyces clavuligerus car and claR genes Length = 2687 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 gcggcgatggccacggcgg 112 ||||||||||||||||||| Sbjct: 386 gcggcgatggccacggcgg 368
>emb|CR938556.1| Single read from an extremity of a full-length cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAA1YH19AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 127 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 92 ccaccgccaccacctcctc 74
>gb|BT007905.1| Synthetic construct Homo sapiens fusion, derived from t(12;16) malignant liposarcoma mRNA, partial cds Length = 1581 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1255 ctccaccgccaccacctcc 1237
>gb|BT007131.1| Homo sapiens fusion, derived from t(12;16) malignant liposarcoma mRNA, complete cds Length = 1581 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1255 ctccaccgccaccacctcc 1237
>emb|AL627444.10| Mouse DNA sequence from clone RP23-307A1 on chromosome 11 Contains the 5' end of the Gabrb2 gene for subunit beta 2 gamma-aminobutyric acid (GABA-A) receptor, complete sequence Length = 176814 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 gcccctcctcctactcatc 71 ||||||||||||||||||| Sbjct: 118602 gcccctcctcctactcatc 118620
>ref|NM_204678.1| Gallus gallus splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila) (SFRS10), mRNA Length = 1334 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcctctg 53 ||||||||||||| ||||||||| Sbjct: 832 ctccaccgccaccgcctcctctg 810
>gb|AY133591.1| Arabidopsis thaliana AT4g38680/F20M13_240 mRNA, complete cds Length = 612 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 547 ccccgccgccaccac-ctccacggccaccacctcc 514
>gb|BC010488.1| Homo sapiens apoptosis, caspase activation inhibitor, mRNA (cDNA clone MGC:16897 IMAGE:2900586), complete cds Length = 1549 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 192 ctccgtccccgccgccgcc 174
>emb|AL832487.1|HSM803795 Homo sapiens mRNA; cDNA DKFZp686C1522 (from clone DKFZp686C1522) Length = 5544 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 442 ctccaccgccaccacctcc 460
>gb|AC011511.12| Homo sapiens chromosome 19 clone CTD-2369P2, complete sequence Length = 156503 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 cctcctctgcccctcctcc 63 ||||||||||||||||||| Sbjct: 114731 cctcctctgcccctcctcc 114749
>dbj|AB017437.1| Gallus gallus mRNA for avena, complete cds Length = 2265 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 1268 ccaccgccaccacctcctc 1286
>gb|AF260262.1| Homo sapiens Abl-interactor protein 1 long (AbI1) mRNA, complete cds Length = 2444 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1118 ctccaccgccaccacctcc 1136
>emb|CR626591.1| full-length cDNA clone CS0DA011YK13 of Neuroblastoma of Homo sapiens (human) Length = 1948 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1308 ctccaccgccaccacctcc 1290
>emb|CR626089.1| full-length cDNA clone CS0DI087YO17 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1727 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1242 ctccaccgccaccacctcc 1224
>gb|AC023719.4| Drosophila melanogaster X BAC RP98-4L24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187230 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 30 gctccaccgccaccacctcctct 52 ||||||||||||||||| ||||| Sbjct: 146554 gctccaccgccaccaccgcctct 146576
>ref|NM_009224.3| Mus musculus U1 small nuclear ribonucleoprotein polypeptide A (Snrp70), mRNA Length = 1674 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 1102 ccaccgccaccacctcctc 1084
>emb|CR622396.1| full-length cDNA clone CS0DI021YF16 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 2224 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1162 ctccaccgccaccacctcc 1180
>ref|NM_198102.1| Mus musculus RIKEN cDNA G430041M01 gene (G430041M01Rik), mRNA Length = 1790 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 832 ccaccgccaccacctcctc 814
>emb|CR621237.1| full-length cDNA clone CS0DA009YP02 of Neuroblastoma of Homo sapiens (human) Length = 1778 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1316 ctccaccgccaccacctcc 1298
>dbj|AK126803.1| Homo sapiens cDNA FLJ44853 fis, clone BRACE3052321, moderately similar to Homo sapiens spectrin SH3 domain binding protein 1 (SSH3BP1) Length = 3289 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1268 ctccaccgccaccacctcc 1286
>emb|CR618104.1| full-length cDNA clone CS0DA001YN04 of Neuroblastoma of Homo sapiens (human) Length = 1785 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1310 ctccaccgccaccacctcc 1292
>emb|CR618073.1| full-length cDNA clone CS0DI009YH23 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1954 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1315 ctccaccgccaccacctcc 1297
>emb|CR616248.1| full-length cDNA clone CS0DH002YO07 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1762 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1283 ctccaccgccaccacctcc 1265
>emb|CR615094.1| full-length cDNA clone CS0DF006YB11 of Fetal brain of Homo sapiens (human) Length = 1779 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1317 ctccaccgccaccacctcc 1299
>emb|CR608658.1| full-length cDNA clone CS0DC028YD14 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1768 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1318 ctccaccgccaccacctcc 1300
>emb|CR602284.1| full-length cDNA clone CS0DF006YB20 of Fetal brain of Homo sapiens (human) Length = 2002 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1308 ctccaccgccaccacctcc 1290
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence Length = 102653 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gccaccacctcctctgccc 56 ||||||||||||||||||| Sbjct: 17368 gccaccacctcctctgccc 17350
>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence Length = 127686 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 gccaccacctcctctgccc 56 ||||||||||||||||||| Sbjct: 101996 gccaccacctcctctgccc 101978
>emb|CR599479.1| full-length cDNA clone CS0DA010YH24 of Neuroblastoma of Homo sapiens (human) Length = 1776 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1315 ctccaccgccaccacctcc 1297
>gb|AC087543.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0068N06, complete sequence Length = 174019 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 134180 ctccaccgccaccacctcc 134198
>emb|CR598388.1| full-length cDNA clone CS0DM006YJ15 of Fetal liver of Homo sapiens (human) Length = 1785 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1322 ctccaccgccaccacctcc 1304
>dbj|AK055135.1| Homo sapiens cDNA FLJ30573 fis, clone BRAWH2006450, weakly similar to Homo sapiens CAGF9 mRNA Length = 2601 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 12 cgtccccgccgccgccacgctcc 34 |||||||||||||||||| |||| Sbjct: 1317 cgtccccgccgccgccaccctcc 1339
>emb|CR591758.1| full-length cDNA clone CS0DF025YA22 of Fetal brain of Homo sapiens (human) Length = 1796 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1338 ctccaccgccaccacctcc 1320
>dbj|AB220488.1| Macaca fascicularis mRNA, clone QmoA-14405: similar to Homo sapiens abl-interactor 1 (ABI1), mRNA, NM_005470.2 Length = 3092 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1046 ctccaccgccaccacctcc 1064
>ref|NM_206154.1| Drosophila melanogaster lethal (2) k07433 CG33130-RB, transcript variant B (l(2)k07433), mRNA Length = 6049 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 3319 ccaccgccaccacctcctc 3301
>ref|NM_206153.1| Drosophila melanogaster lethal (2) k07433 CG33130-RC, transcript variant C (l(2)k07433), mRNA Length = 6319 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 3403 ccaccgccaccacctcctc 3385
>ref|NM_176218.1| Drosophila melanogaster lethal (2) k07433 CG33130-RA, transcript variant A (l(2)k07433), mRNA Length = 5980 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 3319 ccaccgccaccacctcctc 3301
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 3789918 ccaccgccaccacctcctc 3789900
>ref|NM_141666.2| Drosophila melanogaster CG9492-RA (CG9492), mRNA Length = 14016 Score = 38.2 bits (19), Expect = 5.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 29 cgctccaccgccaccacctcctc 51 |||||||||||| |||||||||| Sbjct: 2757 cgctccaccgcccccacctcctc 2735
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 101669 ctccgtccccgccgccgcc 101651
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 103762 ccaccgccaccacctcctc 103780
>ref|NM_133014.2| Drosophila melanogaster unc-4 CG6269-RA (unc-4), mRNA Length = 4356 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 813 ccaccgccaccacctcctc 795
>ref|NM_079093.2| Drosophila melanogaster Fibrillarin CG9888-RA (Fib), mRNA Length = 1331 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 17 ccgccgccgccacgctccaccgccaccacctcctc 51 ||||||||||||| | ||||||| ||||||||||| Sbjct: 335 ccgccgccgccac-caccaccgcgaccacctcctc 302
>dbj|AK133115.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930580A10 product:U1 small nuclear ribonucleoprotein polypeptide A, full insert sequence Length = 1677 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 1148 ccaccgccaccacctcctc 1130
>dbj|AK148013.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270138G01 product:U1 small nuclear ribonucleoprotein polypeptide A, full insert sequence Length = 1711 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 1176 ccaccgccaccacctcctc 1158
>dbj|AK146729.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched library, clone:I920047I07 product:U1 small nuclear ribonucleoprotein polypeptide A, full insert sequence Length = 1685 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 1148 ccaccgccaccacctcctc 1130
>gb|AC007028.3| Homo sapiens chromosome 16 clone RP5-835P2, complete sequence Length = 148807 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 9 ctccgtccccgccgccgcc 27 ||||||||||||||||||| Sbjct: 101381 ctccgtccccgccgccgcc 101363
>gb|AY069080.1| Drosophila melanogaster GH09618 full length cDNA Length = 5721 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 2127 ccaccgccaccacctcctc 2109
>gb|AF396952.1|AF396952 Gallus gallus transcriptional coactivator p100 mRNA, partial cds Length = 2151 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 1429 ccaccgccaccacctcctc 1411
>gb|AF086820.1|AF086820 Drosophila melanogaster paired-like homeodomain protein UNC-4 (unc-4) mRNA, complete cds Length = 2054 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 813 ccaccgccaccacctcctc 795
>dbj|AK171708.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830006B14 product:Transformer-2 protein homolog (TRA-2 alpha) homolog [Homo sapiens], full insert sequence Length = 3041 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 2091 ccaccgccaccacctcctc 2073
>gb|BC002169.1| Mus musculus U1 small nuclear ribonucleoprotein polypeptide A, mRNA (cDNA clone IMAGE:3486572), complete cds Length = 885 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 326 ccaccgccaccacctcctc 308
>gb|BC049128.1| Mus musculus U1 small nuclear ribonucleoprotein polypeptide A, mRNA (cDNA clone IMAGE:6822178), complete cds Length = 4028 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 3479 ccaccgccaccacctcctc 3461
>gb|S62140.1| TLS=translocated in liposarcoma [human, mRNA, 1824 nt] Length = 1824 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1333 ctccaccgccaccacctcc 1315
>gb|S47408.1| glycine-rich protein {clone atGRP-2} [Arabidopsis thaliana, C24, mRNA, 965 nt] Length = 965 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 602 ccccgccgccaccac-ctccacggccaccacctcc 569
>gb|AF540955.1| Homo sapiens Abl-interactor 1 (SSH3BP1) mRNA, complete cds Length = 1452 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 ctccaccgccaccacctcc 49 ||||||||||||||||||| Sbjct: 1097 ctccaccgccaccacctcc 1115
>dbj|AK077425.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730406H19 product:U1 small nuclear ribonucleoprotein 70 kDa polypeptide A, full insert sequence Length = 4063 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 3530 ccaccgccaccacctcctc 3512
>gb|U64896.1|AFU64896 Anagrapha falcifera nuclear polyhedrosis virus protein-typrosine phosphatase, lef-2, polyhedrin, vp78 and protein kinase genes, complete cds Length = 6289 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 4721 ccaccgccaccacctcctc 4703
>gb|AF385696.1|AF385696 Arabidopsis thaliana AT4g38680/F20M13_240 mRNA, complete cds Length = 1089 Score = 38.2 bits (19), Expect = 5.2 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Minus Query: 15 ccccgccgccgccacgctccaccgccaccacctcc 49 |||||||||| |||| |||||| |||||||||||| Sbjct: 877 ccccgccgccaccac-ctccacggccaccacctcc 844
>gb|AC008004.5|AC008004 Drosophila melanogaster, chromosome 2R, region 54B-54C, BAC clone BACR21A09, complete sequence Length = 175506 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 117237 ccaccgccaccacctcctc 117255
>dbj|AK005045.2| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300018I14 product:U1 small nuclear ribonucleoprotein 70 kDa polypeptide A, full insert sequence Length = 3036 Score = 38.2 bits (19), Expect = 5.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 33 ccaccgccaccacctcctc 51 ||||||||||||||||||| Sbjct: 2507 ccaccgccaccacctcctc 2489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,647,681 Number of Sequences: 3902068 Number of extensions: 1647681 Number of successful extensions: 179742 Number of sequences better than 10.0: 375 Number of HSP's better than 10.0 without gapping: 353 Number of HSP's successfully gapped in prelim test: 38 Number of HSP's that attempted gapping in prelim test: 171614 Number of HSP's gapped (non-prelim): 8139 length of query: 114 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 93 effective length of database: 17,151,101,840 effective search space: 1595052471120 effective search space used: 1595052471120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)