ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet91h10 |
|---|---|
| Clone Library Name | barley_pub |
>GLXB_RHIME (O87390) Glutamine amidotransferase-like protein glxB| Length = 300 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 209 RPAISRVPVEALGGAHGLMPLHSATASALLTSMLGLKPGSWG 334 + ++R V ++GG+HG+ AT SA+ T LG P S G Sbjct: 127 KDVVARFDVRSMGGSHGIGHTRMATESAVTT--LGAHPFSTG 166
>NQO14_THET8 (Q56229) NADH-quinone oxidoreductase subunit 14 (EC 1.6.99.5) (NADH| dehydrogenase I chain 14) (NDH-1 subunit 14) Length = 427 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%) Frame = +2 Query: 224 RVPVEALGGAHGLMPLHSATASALLTSMLGLKP--GSWG 334 RVP+EAL G + PL + S+LGL P G WG Sbjct: 306 RVPLEALRGLYRKDPLLGLAFLVAMLSLLGLPPLAGFWG 344
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -3 Query: 328 RSGLKPEHGGEQSRRSGAVQRHQPMRAAERLHRDPRDRG 212 R G+ PE G RR+G +++ P E L P ++G Sbjct: 937 RRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQG 975
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -3 Query: 328 RSGLKPEHGGEQSRRSGAVQRHQPMRAAERLHRDPRDRG 212 R G+ PE G RR+G +++ P E L P ++G Sbjct: 934 RRGIPPEEPGAPPRRAGPIKKPPPPTKVEELPPKPLEQG 972
>CASR_RAT (P48442) Extracellular calcium-sensing receptor precursor (CaSR)| (Parathyroid Cell calcium-sensing receptor) Length = 1079 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +2 Query: 194 RSTRRRPAISRVPVEALGGAHGLMPLHSATASA 292 R+T RRP ISR +LGG+ G +P S ++ + Sbjct: 886 RATLRRPNISRKRSSSLGGSTGSIPSSSISSKS 918
>YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III| Length = 1150 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -3 Query: 310 EHGGEQSRRSGAVQRHQPMRAAERLHRDPRDRGAPASGAR 191 E GGE R ++ + + A R R+ RD G P S R Sbjct: 965 EEGGEDGERRERRKKDKAAKKASRKKRERRDSGGPDSNRR 1004
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Frame = -3 Query: 328 RSGLKPE-HGGEQSRRSGAVQRHQPMRAAERLHRDPRDRGAPAS 200 R PE HGG+ +R + QP R R R R RG P + Sbjct: 112 RPSCSPEQHGGKVARLQPPPTKAQPARGGRRGRRRGRGRGGPGA 155
>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 511 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%) Frame = -3 Query: 328 RSGLKPE-HGGEQSRRSGAVQRHQPMRAAERLHRDPRDRGAPAS 200 R PE HGG+ +R + QP R R R R RG P + Sbjct: 112 RPSCSPEQHGGKVARLQPPPTKAQPARGGRRGRRRGRGRGGPGA 155
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/15 (73%), Positives = 12/15 (80%) Frame = -3 Query: 103 QPREGPPRAASRRRH 59 +PR PPRA SRRRH Sbjct: 499 RPRSPPPRAPSRRRH 513
>CHEB1_DESDG (Q311M8) Chemotaxis response regulator protein-glutamate| methylesterase 1 (EC 3.1.1.61) Length = 369 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 5/52 (9%) Frame = -1 Query: 339 SQPQDPGLS--PSMEVSKADAVALCSGINPCAPPSA---STGTLEIAGRRRV 199 S+ + PG S P+ V A AL + P A PS+ STGTL++AG + V Sbjct: 129 SRRRVPGRSFRPAPAVRPAAPAALRATPRPSAAPSSAASSTGTLQVAGGKPV 180
>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)| Length = 1007 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/42 (30%), Positives = 21/42 (50%) Frame = -1 Query: 348 PSESQPQDPGLSPSMEVSKADAVALCSGINPCAPPSASTGTL 223 P++SQ P ++P S A ++PC+PPS +L Sbjct: 726 PTQSQQTQPPVAPQAPSSILLPAAPIPILSPCSPPSPQASSL 767
>CASR_MOUSE (Q9QY96) Extracellular calcium-sensing receptor precursor (CaSR)| (Parathyroid Cell calcium-sensing receptor) Length = 1079 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +2 Query: 194 RSTRRRPAISRVPVEALGGAHGLMPLHSATASA 292 R+T RRP ISR +LGG+ G P S ++ + Sbjct: 886 RATLRRPNISRKRSSSLGGSTGSNPSSSISSKS 918
>PO2F3_RAT (P42571) POU domain, class 2, transcription factor 3| (Octamer-binding transcription factor 11) (Oct-11) (Transcription factor Skn-1) Length = 430 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 184 LSASLHSPAPRDLEGPGG 237 L AS H P P+ L GPGG Sbjct: 157 LEASQHLPGPKHLPGPGG 174
>CRYM_MACFL (Q28488) Mu-crystallin| Length = 314 Score = 27.3 bits (59), Expect = 9.5 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 4/44 (9%) Frame = +2 Query: 209 RPAISRVPVEALGGAHGLMPLHSATASALLTSML----GLKPGS 328 +P + +PV G G+MP++SA+ AL T ++ G+ P S Sbjct: 44 QPVRTVIPVAKHQGFLGIMPVYSASEDALTTKLVTFYEGMSPTS 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,234,861 Number of Sequences: 219361 Number of extensions: 501912 Number of successful extensions: 2319 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2318 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
