ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet91f09 |
|---|---|
| Clone Library Name | barley_pub |
>PSAD_HORVU (P36213) Photosystem I reaction center subunit II, chloroplast| precursor (Photosystem I 20 kDa subunit) (PSI-D) Length = 205 Score = 58.9 bits (141), Expect = 3e-09 Identities = 27/28 (96%), Positives = 27/28 (96%) Frame = +1 Query: 127 RHLITAAWSPSDKPRPATLAMPSSARGP 210 RHLITAAWSPS KPRPATLAMPSSARGP Sbjct: 12 RHLITAAWSPSAKPRPATLAMPSSARGP 39
>B3A3_RAT (P23348) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 30.4 bits (67), Expect = 1.3 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +3 Query: 66 KNHKLERHRHGHGHASLGGDAPPDHRGLVAIRQAPPRHPRHA 191 ++ + RH H H L PP H+ +R+ PP RHA Sbjct: 69 RDFEFHRHTSHHTHHPLSARLPPPHK----LRRLPPTSARHA 106
>SMS1_MOUSE (Q8VCQ6) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin synthase 1) (Mob protein) Length = 419 Score = 29.6 bits (65), Expect = 2.2 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +3 Query: 60 LAKNHKLERHRHGH--GHASLGGDAP-PDHRGLVAIRQAPPRHP 182 L H +E H++GH GH S+G D P PD G +I+ P P Sbjct: 73 LKMEHHMEAHKNGHANGHLSIGVDIPNPD--GSFSIKTKPNGMP 114
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 29.3 bits (64), Expect = 2.9 Identities = 18/59 (30%), Positives = 24/59 (40%) Frame = +3 Query: 12 TPSPARACGLRSLPHLLAKNHKLERHRHGHGHASLGGDAPPDHRGLVAIRQAPPRHPRH 188 TPSP + G RS+ +A+NH + R + PP G PP P H Sbjct: 512 TPSPTGSSGSRSMSPAVAQNHPISRPASNQSSSGGPMQQPPVGAG------GPPPMPPH 564
>GLMS_HALSA (Q9HT00) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 600 Score = 29.3 bits (64), Expect = 2.9 Identities = 13/46 (28%), Positives = 18/46 (39%) Frame = +3 Query: 15 PSPARACGLRSLPHLLAKNHKLERHRHGHGHASLGGDAPPDHRGLV 152 P P+R G R + H H + H H GD H G++ Sbjct: 54 PVPSREDGTRGIGHTRWSTHGEPTRENAHPHTDCTGDVAVVHNGII 99
>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich| glycoprotein) Length = 620 Score = 28.9 bits (63), Expect = 3.8 Identities = 26/76 (34%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Frame = +3 Query: 3 PDTTPSPARACGLRSLPHLLAKNHKLERHR-----HGHGHASLGGDAPPDHRGLVAIRQA 167 P TTP P+R H+ + H RH HGH S+GG PP HRG + + Sbjct: 55 PTTTP-PSRG-------HVPSPRHAPPRHAYPPPSHGHLPPSVGG--PPPHRGHLPPSRG 104 Query: 168 --PPRHPRHAILRPRP 209 PP P + P P Sbjct: 105 FNPPPSPVISPSHPPP 120
>SMS1_RAT (Q7TSX5) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin synthase 1) (Mob protein) Length = 419 Score = 28.9 bits (63), Expect = 3.8 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +3 Query: 60 LAKNHKLERHRHGH--GHASLGGDAP-PDHRGLVAIRQAPPRHP 182 L H +E H++GH GH S+G D P PD G +I+ P P Sbjct: 73 LKMEHHIEAHKNGHANGHLSIGVDIPNPD--GSFSIKIKPNGMP 114
>B3A3_MOUSE (P16283) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) Length = 1227 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 66 KNHKLERHRHGHGHASLGGDAPPDHRGLVAIRQAPPRHPRH 188 ++ + RH H H L PP H+ +R+ PP RH Sbjct: 69 RDFEFHRHTSHHTHHPLSARLPPPHK----LRRPPPTSARH 105
>B3A3_HUMAN (P48751) Anion exchange protein 3 (Neuronal band 3-like protein)| (Solute carrier family 4 member 3) (Cardiac/brain band 3-like protein) (CAE3/BAE3) Length = 1232 Score = 28.9 bits (63), Expect = 3.8 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +3 Query: 66 KNHKLERHRHGHGHASLGGDAPPDHRGLVAIRQAPPRHPRH 188 ++ + RH H H L PP H+ +R+ PP RH Sbjct: 69 RDFEFHRHTSHHTHHPLSARLPPPHK----LRRLPPTSARH 105
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 28.9 bits (63), Expect = 3.8 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%) Frame = +3 Query: 15 PSPARA-CGL-RSLPHLLAKNHKLER---HRHGHGHASLGGDAP---PDHRGLVAIRQAP 170 P+P RA CG R PH +H+ H H H A+ G D P P R L + P Sbjct: 1207 PAPRRARCGCPRPHPHRPRASHRAPAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCP 1266 Query: 171 PRHPRHAILRP 203 P + P Sbjct: 1267 RAAPTRRLTGP 1277
>SMS1_HUMAN (Q86VZ5) Phosphatidylcholine:ceramide cholinephosphotransferase 1| (EC 2.7.-.-) (Transmembrane protein 23) (Sphingomyelin synthase 1) (Mob protein) Length = 419 Score = 28.5 bits (62), Expect = 5.0 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = +3 Query: 60 LAKNHKLERHRHGH--GHASLGGDAP-PDHRGLVAIRQAPPRHP 182 L H LE H++GH GH ++G D P PD G +I+ P P Sbjct: 73 LKMEHHLEAHKNGHANGHLNIGVDIPTPD--GSFSIKIKPNGMP 114
>ZN179_HUMAN (Q9ULX5) Zinc finger protein 179 (Brain finger protein) (RING| finger protein 112) Length = 632 Score = 28.1 bits (61), Expect = 6.5 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 5/39 (12%) Frame = +3 Query: 84 RHRHGHGHASLGGDAPPDHRGLVA-----IRQAPPRHPR 185 R R GHAS GGD D R L+ + A P+H + Sbjct: 364 RRRMNQGHASPGGDTDDDFRHLLGAYVSDVLSAAPQHAK 402 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.129 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,811,387 Number of Sequences: 219361 Number of extensions: 390110 Number of successful extensions: 1731 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1557 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1702 length of database: 80,573,946 effective HSP length: 46 effective length of database: 70,483,340 effective search space used: 1691600160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
