ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet91d02 |
|---|---|
| Clone Library Name | barley_pub |
>HYPA_CLOPE (Q46205) Protein hypA| Length = 973 Score = 99.0 bits (245), Expect = 5e-21 Identities = 54/139 (38%), Positives = 75/139 (53%) Frame = +3 Query: 21 NEAIVIPTQVNYVGKAGNLYQSGYQLNGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFD 200 NE ++ V YV K GN GY+ +G+ ++ + +LW+ VRV GGAYG F +F Sbjct: 783 NEGLLTQGNVQYVAKGGNYKTHGYKYSGALSLLESILGFDYLWNAVRVKGGAYGVFSNFR 842 Query: 201 THSGVFSYLSYRDPNLLKTLEVYDGTAKFLRELEVDDDAPTKAIIGTIGDVDSYQLPDAK 380 G + +SYRDPN+ TLE YD K+L + E D+ TK IIGTI D K Sbjct: 843 RDGGAY-IVSYRDPNIKSTLEAYDNIPKYLNDFEADEREMTKYIIGTIRKYDQPISNGIK 901 Query: 381 GYSSLMRYLLGITEEERQQ 437 G ++ YL T E+ Q+ Sbjct: 902 GDIAVSYYLSNFTYEDLQK 920
>Y228_BORBU (O51246) Hypothetical protein BB0228| Length = 971 Score = 61.2 bits (147), Expect = 1e-09 Identities = 38/140 (27%), Positives = 68/140 (48%) Frame = +3 Query: 15 SVNEAIVIPTQVNYVGKAGNLYQSGYQLNGSAYVISKHISNTWLWDRVRVSGGAYGGFCD 194 ++ E I+I ++V + Y+ + A + + + W+++RV GGAYG Sbjct: 773 ALREIIIIQSKVAFNAICFPSYKINDENYPKANFLEHVLRSGIFWEKIRVMGGAYGASAS 832 Query: 195 FDTHSGVFSYLSYRDPNLLKTLEVYDGTAKFLRELEVDDDAPTKAIIGTIGDVDSYQLPD 374 +G+FS+ SYRDPN KT + ++ + + L ++ DD +IG IG + Sbjct: 833 IA--NGIFSFASYRDPNFTKTYQAFEKSLEELANNKMTDDEIYTYLIGLIGTNIYVKTKA 890 Query: 375 AKGYSSLMRYLLGITEEERQ 434 + S R +L I++ RQ Sbjct: 891 TEALQSYRRKMLNISDSLRQ 910
>YD430_YEAST (P32898) Hypothetical 112.2 kDa protein in TIF35-NPL3 intergenic| region (ORF1) Length = 989 Score = 57.8 bits (138), Expect = 1e-08 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 1/136 (0%) Frame = +3 Query: 30 IVIPTQVNYVGKAGNLYQSGYQLNGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDTHS 209 I P QV+Y +A ++ + V+S ++ L VR GGAYGG + + Sbjct: 807 IKFPFQVHYTSQALLGVPYTHKDGSALQVMSNMLTFKHLHREVREKGGAYGGGASYSALA 866 Query: 210 GVFSYLSYRDPNLLKTLEVYDGTAKF-LRELEVDDDAPTKAIIGTIGDVDSYQLPDAKGY 386 G+FS+ SYRDP LK+LE + + ++ L + + +A + VD+ + P +G Sbjct: 867 GIFSFYSYRDPQPLKSLETFKNSGRYILNDAKWGVTDLDEAKLTIFQQVDAPKSPKGEGV 926 Query: 387 SSLMRYLLGITEEERQ 434 + M G+T++ +Q Sbjct: 927 TYFMS---GVTDDMKQ 939
>YBAH_SCHPO (O42908) Hypothetical protein C119.17 in chromosome II| Length = 882 Score = 34.3 bits (77), Expect = 0.16 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 114 VISKHISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSYLSYRD 239 ++S +++ +L +R GGAYG + GV S+ +YRD Sbjct: 838 ILSSLLTHKYLHGEIREKGGAYGAGLSYSGIDGVLSFFTYRD 879
>HAT2_CANAL (Q59RH5) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)| Length = 382 Score = 30.8 bits (68), Expect = 1.7 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%) Frame = +3 Query: 237 DPNL-----LKTLEVYDGTAKFLRELEVDDDAPTKAIIGTIGDVDSYQLPDAKGYSSLMR 401 DPN+ +KT++ + A+ R + DA A I +G+VD Y L YS Sbjct: 82 DPNVKANSKIKTVQKLENNAEICRARYMPQDANIVATINGLGEVDLYNLDTETRYSHFAP 141 Query: 402 YL---LGITEEERQQGV 443 + G++ +Q+G+ Sbjct: 142 HTKNGYGLSWNPKQKGL 158
>CDON_RAT (O35158) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1256 Score = 29.6 bits (65), Expect = 3.8 Identities = 19/59 (32%), Positives = 29/59 (49%) Frame = +3 Query: 69 GNLYQSGYQLNGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSYLSYRDPN 245 G LYQ G ++NG + T L R++G +GGF + S S+L ++ PN Sbjct: 1001 GYLYQ-GSEINGQM------VEYTTLSGTARINGSVHGGFLSKGSLSNGCSHLHHKGPN 1052
>CDON_HUMAN (Q4KMG0) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1287 Score = 29.6 bits (65), Expect = 3.8 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 7/97 (7%) Frame = +3 Query: 69 GNLYQSGYQLNGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSYLSYRDPNL 248 G LYQ G +NG + T L +++G +GGF S +S+L ++ PN Sbjct: 1004 GYLYQ-GSDMNGQM------VDYTTLSGASQINGNVHGGFLTNGGLSSGYSHLHHKVPNA 1056 Query: 249 LKTL-------EVYDGTAKFLRELEVDDDAPTKAIIG 338 + + +Y G + L VD + P + G Sbjct: 1057 VNGIVNGSLNGGLYSGHSNSLTRTHVDFEHPHHLVNG 1093
>Y1500_CLOTE (Q894N6) UPF0145 protein CTC_01500| Length = 106 Score = 29.6 bits (65), Expect = 3.8 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 Query: 213 VFSYLSYRDPNLLKTLEVYDGTAKFLRELEVDDDAPTKAIIGTIGDVDSY 362 + S LSY D L+T+ + +G F + + D A K ++G G++ SY Sbjct: 2 ILSNLSYIDNKELETINIVEGVCVFSKNVGKDIMASFKNVVG--GEIKSY 49
>RPOC_THEAQ (Q9KWU6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 29.3 bits (64), Expect = 5.0 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +3 Query: 339 TIGDVDSYQLPDAKGYSSLMRYLLG-ITEEERQQGVK 446 T G +D +QL +AKG ++ RYL+ I + R QGVK Sbjct: 1326 TRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVK 1362
>CR5AC_BACTU (P56955) Pesticidal crystal protein cry5Ac (Insecticidal| delta-endotoxin CryVA(c)) (Crystaline entomocidal protoxin) (135 kDa crystal protein) Length = 1220 Score = 28.9 bits (63), Expect = 6.6 Identities = 25/85 (29%), Positives = 32/85 (37%) Frame = +3 Query: 150 DRVRVSGGAYGGFCDFDTHSGVFSYLSYRDPNLLKTLEVYDGTAKFLRELEVDDDAPTKA 329 D R+S G GGF D YLSY +T + Y G L + +A Sbjct: 468 DGTRLSAGMGGGFADTIYSLPATHYLSYLYGTPYQTSDNYSGHVGALVGVSTPQEATLPN 527 Query: 330 IIGTIGDVDSYQLPDAKGYSSLMRY 404 IIG PD +G S M + Sbjct: 528 IIGQ---------PDEQGNVSTMGF 543
>PSD_IDILO (Q5QVW0) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 292 Score = 28.9 bits (63), Expect = 6.6 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%) Frame = +3 Query: 288 LRELEVDDDA---PTKAIIGTIGDVDSYQLPDAKGYSSLMRYLLGITEEE 428 LR LE + P + +GD+++ ++ AKG+ ++ LLG EE+ Sbjct: 77 LRPLEASESELAHPVDGAVSQLGDIENGRIFQAKGHDYSLQELLGGNEED 126
>CR5AB_BACUD (Q45753) Pesticidal crystal protein cry5Ab (Insecticidal| delta-endotoxin CryVA(b)) (Crystaline entomocidal protoxin) (142 kDa crystal protein) Length = 1289 Score = 28.9 bits (63), Expect = 6.6 Identities = 25/85 (29%), Positives = 32/85 (37%) Frame = +3 Query: 150 DRVRVSGGAYGGFCDFDTHSGVFSYLSYRDPNLLKTLEVYDGTAKFLRELEVDDDAPTKA 329 D R+S G GGF D YLSY +T + Y G L + +A Sbjct: 468 DGTRLSAGMGGGFADTIYSLPATHYLSYLYGTPYQTSDNYSGHVGALVGVSTPQEATLPN 527 Query: 330 IIGTIGDVDSYQLPDAKGYSSLMRY 404 IIG PD +G S M + Sbjct: 528 IIGQ---------PDEQGNVSTMGF 543
>RPOC_THET2 (Q72HM6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1513 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +3 Query: 339 TIGDVDSYQLPDAKGYSSLMRYLL-GITEEERQQGVK 446 T G +D +QL +AKG ++ RYL+ I + R QGVK Sbjct: 1315 TRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVK 1351
>RPOC_THET8 (Q8RQE8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 28.9 bits (63), Expect = 6.6 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = +3 Query: 339 TIGDVDSYQLPDAKGYSSLMRYLL-GITEEERQQGVK 446 T G +D +QL +AKG ++ RYL+ I + R QGVK Sbjct: 1326 TRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVK 1362
>CR5AA_BACUD (Q45760) Pesticidal crystal protein cry5Aa (Insecticidal| delta-endotoxin CryVA(a)) (Crystaline entomocidal protoxin) (152 kDa crystal protein) Length = 1385 Score = 28.9 bits (63), Expect = 6.6 Identities = 25/85 (29%), Positives = 32/85 (37%) Frame = +3 Query: 150 DRVRVSGGAYGGFCDFDTHSGVFSYLSYRDPNLLKTLEVYDGTAKFLRELEVDDDAPTKA 329 D R+S G GGF D YLSY +T + Y G L + +A Sbjct: 468 DGTRLSAGMGGGFADTIYSLPATHYLSYLYGTPYQTSDNYSGHVGALVGVSTPQEATLPN 527 Query: 330 IIGTIGDVDSYQLPDAKGYSSLMRY 404 IIG PD +G S M + Sbjct: 528 IIGQ---------PDEQGNVSTMGF 543
>XPA_DROME (P28518) DNA-repair protein complementing XP-A cells homolog| (Xeroderma pigmentosum group A complementing protein homolog) Length = 296 Score = 28.9 bits (63), Expect = 6.6 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 19/120 (15%) Frame = +3 Query: 12 PSVNEAIVIPTQVNYVGKAGNLYQSGYQLNGSAYVISKHISNT----WLWDRVRVSGGAY 179 P +++AI IP Q + G+++ Y N + + + L R Sbjct: 111 PILDDAIAIPVQYEECLECGDMFADSYLFNNFGHSVCDKCRDKDERYALITRTEAKAEYL 170 Query: 180 GGFCDFDTHSGVFSYLSYRDPNLL---------------KTLEVYDGTAKFLRELEVDDD 314 CDFD Y+S ++P+ + + LEV+ + +R+ E +D Sbjct: 171 LKDCDFDKREPKLRYISRKNPHNVRWGEMKLYLHLQIHQRALEVWGSEEELVRQHEARED 230
>FDFT_NICBE (P53800) Squalene synthetase (EC 2.5.1.21) (SQS) (SS)| (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP farnesyltransferase) Length = 411 Score = 28.5 bits (62), Expect = 8.6 Identities = 23/83 (27%), Positives = 33/83 (39%) Frame = +3 Query: 150 DRVRVSGGAYGGFCDFDTHSGVFSYLSYRDPNLLKTLEVYDGTAKFLRELEVDDDAPTKA 329 DR R YG F DF + S ++ DPN KTL+ + K R+ Sbjct: 323 DRTRTIADVYGAFFDFSCM--LKSKVNNNDPNATKTLKRLEVILKTCRD----------- 369 Query: 330 IIGTIGDVDSYQLPDAKGYSSLM 398 GT+ SY + YS ++ Sbjct: 370 -SGTLNKRKSYIIRSEPNYSPVL 391
>GUNG_CLOCE (P37700) Endoglucanase G precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase G) (Cellulase G) (EGCCG) Length = 725 Score = 28.5 bits (62), Expect = 8.6 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Frame = +3 Query: 243 NLLKTLEVYDGTAK-FLRELEVDDDAPTKAIIGTIGDVDSYQLPDAKGYSSLMRYLLGIT 419 N + + VYD K F E + P I+ GDV+S + DA +++L +YLLG T Sbjct: 630 NTVTNIPVYDNGVKVFGNEPAGGSENPDPEIL--YGDVNSDKNVDALDFAALKKYLLGGT 687 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,245,834 Number of Sequences: 219361 Number of extensions: 1414082 Number of successful extensions: 3465 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3463 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
