Clone Information

BLAST Search Result

Clone Name	baet91d02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY105969.1\| Zea mays PCO131995 mRNA sequence	498	e-138
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	252	9e-64
3	dbj\|AP005002.3\| Oryza sativa (japonica cultivar-group) genomic D...	252	9e-64
4	ref\|XM_467920.1\| Oryza sativa (japonica cultivar-group), mRNA	192	7e-46
5	dbj\|AK060417.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	192	7e-46
6	ref\|NM_112804.3\| Arabidopsis thaliana ATPREP1/ATZNMP; metalloend...	101	2e-18
7	gb\|AY091051.1\| Arabidopsis thaliana putative metalloprotease (At...	101	2e-18
8	gb\|AY090240.1\| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, comp...	101	2e-18
9	gb\|BT006362.1\| Arabidopsis thaliana At3g19170/MVI11_8 gene, comp...	101	2e-18
10	gb\|BT002372.1\| Arabidopsis thaliana clone U19043 putative metall...	101	2e-18
11	dbj\|AP000419.1\| Arabidopsis thaliana genomic DNA, chromosome 3, ...	82	2e-12
12	ref\|NM_180631.1\| Arabidopsis thaliana ATPREP2; metalloendopeptid...	74	4e-10
13	ref\|NM_180630.1\| Arabidopsis thaliana ATPREP2; metalloendopeptid...	74	4e-10
14	ref\|NM_103851.3\| Arabidopsis thaliana ATPREP2; metalloendopeptid...	74	4e-10
15	gb\|AY074305.1\| Arabidopsis thaliana putative hydrogenase protein...	74	4e-10
16	gb\|BT004376.1\| Arabidopsis thaliana clone U19879 putative hydrog...	74	4e-10
17	gb\|AC011807.4\|AC011807 Arabidopsis thaliana chromosome I BAC F14...	74	4e-10
18	gb\|AC091902.2\| Homo sapiens chromosome 5 clone RP11-16L24, compl...	42	1.6
19	gb\|AC091897.4\| Homo sapiens chromosome 5 clone RP11-149M3, compl...	42	1.6
20	gb\|AC102103.10\| Mus musculus chromosome 15, clone RP23-82K1, com...	40	6.2
21	gb\|BC036982.1\| Mus musculus thyrotroph embryonic factor, transcr...	40	6.2
22	gb\|BC017689.1\| Mus musculus thyrotroph embryonic factor, transcr...	40	6.2
23	ref\|NM_153484.1\| Mus musculus thyrotroph embryonic factor (Tef),...	40	6.2
24	ref\|NM_017376.2\| Mus musculus thyrotroph embryonic factor (Tef),...	40	6.2
25	gb\|AY540631.1\| Mus musculus thyrotroph embryonic factor alpha is...	40	6.2
26	gb\|AC005486.2\| Homo sapiens PAC clone RP5-1070G24 from 7, comple...	40	6.2
27	gb\|AC132339.3\| Mus musculus BAC clone RP24-165O21 from chromosom...	40	6.2
28	gb\|AC004413.2\| Homo sapiens PAC clone RP4-650P9 from 7, complete...	40	6.2
29	emb\|AL359633.15\| Human DNA sequence from clone RP11-795J1 on chr...	40	6.2
30	gb\|AC135204.3\| Rattus norvegicus 1 BAC CH230-381D2 (Children's H...	40	6.2
31	emb\|BX119976.8\| Zebrafish DNA sequence from clone CH211-196F5 in...	40	6.2
32	dbj\|AK141606.1\| Mus musculus adult male hippocampus cDNA, RIKEN ...	40	6.2
33	dbj\|AK147965.1\| Mus musculus melanocyte cDNA, RIKEN full-length ...	40	6.2
34	dbj\|AK154472.1\| Mus musculus NOD-derived CD11c +ve dendritic cel...	40	6.2
35	gb\|AC158970.3\| Mus musculus chromosome 15, clone RP24-186A9, com...	40	6.2
36	dbj\|AK009518.1\| Mus musculus adult male tongue cDNA, RIKEN full-...	40	6.2
37	gb\|BC023410.1\| Mus musculus thyrotroph embryonic factor, mRNA (c...	40	6.2
38	dbj\|AK010205.1\| Mus musculus adult male tongue cDNA, RIKEN full-...	40	6.2
39	dbj\|AK042146.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	40	6.2
40	dbj\|AK085437.1\| Mus musculus 0 day neonate kidney cDNA, RIKEN fu...	40	6.2
41	gb\|BC094169.1\| Xenopus laevis cDNA clone MGC:115330 IMAGE:694890...	40	6.2
42	gb\|AC129207.4\| Mus musculus chromosome 5 clone RP24-280N5, compl...	40	6.2

>gb|AY105969.1| Zea mays PCO131995 mRNA sequence
          Length = 1779

 Score =  498 bits (251), Expect = e-138
 Identities = 396/443 (89%), Gaps = 1/443 (0%)
 Strand = Plus / Plus

                                                                        
Query: 12   ccttctgttaatgaagccattgttatccctacacaggttaattatgttggaaaagctgga 71
            |||||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct: 1143 ccttctgtgaatgaagccattgttgtcccaactcaggttaattatgttggaaaagctgga 1202

                                                                        
Query: 72   aacctataccaaagtggataccagctcaatggaagtgcctatgtcatatccaagcacata 131
            ||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct: 1203 aacctttaccaaagtggataccagctcaatggaagcgcctatgtcatctcaaagcacata 1262

                                                                        
Query: 132  agcaacacatggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgt 191
            ||||| |||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 1263 agcaatacatggttatgggatcgtgttcgagttagcggtggtgcatatggaggattttgt 1322

                                                                        
Query: 192  gattttgacactcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctg 251
            ||||||||||| |||||||| || || || ||||| ||||| |||||||| ||||| |||
Sbjct: 1323 gattttgacacccattcaggagtgttctcatatttatcatatcgtgatccaaacttactg 1382

                                                                        
Query: 252  aaaacactagaggtctatgatgggactgcaaagttcctcagagaactagaggtagatgat 311
            |||||||||||||||||||||| ||| ||||  ||||||||||| |||||  | ||||||
Sbjct: 1383 aaaacactagaggtctatgatgagacagcaagattcctcagagagctagaattggatgat 1442

                                                                        
Query: 312  gatgctcccacaaaagctattattggcaccataggggatgttgattcctatcagctacca 371
            ||||| | |||||||||||||||||| |||||||| ||||||||  |||| |||||||||
Sbjct: 1443 gatgcactcacaaaagctattattggaaccataggcgatgttgacgcctaccagctacca 1502

                                                                        
Query: 372  gatgctaaaggttacagcagtctgatgcggtatttgttgggcatcactgaggaggaacgc 431
            |||||||||||||||||||| || ||| | |||||| |||||||||| || |||||||||
Sbjct: 1503 gatgctaaaggttacagcagcctaatgagatatttgctgggcatcacggatgaggaacgc 1562

                                   
Query: 432  cagc-aaggcgtgaagagatact 453
            |||| ||| ||||||||||||||
Sbjct: 1563 cagcaaagacgtgaagagatact 1585

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  252 bits (127), Expect = 9e-64
 Identities = 157/167 (94%)
 Strand = Plus / Plus

                                                                            
Query: 46       aggttaattatgttggaaaagctggaaacctataccaaagtggataccagctcaatggaa 105
                ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 32086509 aggttaattatgttggaaaagctggaaacctgtaccaaagtggatatcagctcaatggaa 32086568

                                                                            
Query: 106      gtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagtta 165
                ||||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct: 32086569 gtgcctatgtcatctccaagcatataagcaatacgtggttgtgggaccgtgttcgagtta 32086628

                                                               
Query: 166      gtggtggagcatatggagggttttgtgattttgacactcattcaggt 212
                ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 32086629 gtggtggtgcatatggagggttttgtgattttgacacccattcaggt 32086675



 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                            
Query: 225      ttgtcataccgtgatccgaacttgctgaaaacactagaggtctatgatgggactgcaaag 284
                ||||||||||||||||| || ||  ||||||||||||| || ||||||| ||| || |||
Sbjct: 32086806 ttgtcataccgtgatccaaatttattgaaaacactagaagtttatgatgagacggccaag 32086865

                                                                            
Query: 285      ttcctcagagaactagaggtagatgatgatgctcccacaaaagctattattggcaccata 344
                ||||| ||||| |||||  | |||||||||  || |||||||||||||||||| ||||||
Sbjct: 32086866 ttcctaagagagctagaaatggatgatgattgtctcacaaaagctattattggtaccata 32086925

                                                               
Query: 345      ggggatgttgattcctatcagctaccagatgctaaaggttacagcag 391
                || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 32086926 ggtgacgttgattcctaccagctgccagatgctaaaggttacagcag 32086972



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 58/66 (87%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                            
Query: 389      cagtctgatgcggtatttgttgggcatcactgaggaggaacgccagc-aaggcgtgaaga 447
                |||||| ||||| || ||| |||||||||| | |||||||||||||| ||| ||||||||
Sbjct: 32087296 cagtctaatgcgatacttgctgggcatcacggtggaggaacgccagcaaagacgtgaaga 32087355

                      
Query: 448      gatact 453
                ||||||
Sbjct: 32087356 gatact 32087361

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>dbj|AP005002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0486G03
          Length = 146713

 Score =  252 bits (127), Expect = 9e-64
 Identities = 157/167 (94%)
 Strand = Plus / Plus

                                                                         
Query: 46    aggttaattatgttggaaaagctggaaacctataccaaagtggataccagctcaatggaa 105
             ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 23165 aggttaattatgttggaaaagctggaaacctgtaccaaagtggatatcagctcaatggaa 23224

                                                                         
Query: 106   gtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagtta 165
             ||||||||||||| |||||||| |||||||| || ||||| |||||||| ||||||||||
Sbjct: 23225 gtgcctatgtcatctccaagcatataagcaatacgtggttgtgggaccgtgttcgagtta 23284

                                                            
Query: 166   gtggtggagcatatggagggttttgtgattttgacactcattcaggt 212
             ||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 23285 gtggtggtgcatatggagggttttgtgattttgacacccattcaggt 23331



 Score =  157 bits (79), Expect = 4e-35
 Identities = 145/167 (86%)
 Strand = Plus / Plus

                                                                         
Query: 225   ttgtcataccgtgatccgaacttgctgaaaacactagaggtctatgatgggactgcaaag 284
             ||||||||||||||||| || ||  ||||||||||||| || ||||||| ||| || |||
Sbjct: 23462 ttgtcataccgtgatccaaatttattgaaaacactagaagtttatgatgagacggccaag 23521

                                                                         
Query: 285   ttcctcagagaactagaggtagatgatgatgctcccacaaaagctattattggcaccata 344
             ||||| ||||| |||||  | |||||||||  || |||||||||||||||||| ||||||
Sbjct: 23522 ttcctaagagagctagaaatggatgatgattgtctcacaaaagctattattggtaccata 23581

                                                            
Query: 345   ggggatgttgattcctatcagctaccagatgctaaaggttacagcag 391
             || || ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 23582 ggtgacgttgattcctaccagctgccagatgctaaaggttacagcag 23628



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 58/66 (87%), Gaps = 1/66 (1%)
 Strand = Plus / Plus

                                                                         
Query: 389   cagtctgatgcggtatttgttgggcatcactgaggaggaacgccagc-aaggcgtgaaga 447
             |||||| ||||| || ||| |||||||||| | |||||||||||||| ||| ||||||||
Sbjct: 23952 cagtctaatgcgatacttgctgggcatcacggtggaggaacgccagcaaagacgtgaaga 24011

                   
Query: 448   gatact 453
             ||||||
Sbjct: 24012 gatact 24017

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>ref|XM_467920.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score =  192 bits (97), Expect = 7e-46
 Identities = 179/205 (87%), Gaps = 1/205 (0%)
 Strand = Plus / Plus

                                                                       
Query: 250 tgaaaacactagaggtctatgatgggactgcaaagttcctcagagaactagaggtagatg 309
           ||||||||||||| || ||||||| ||| || |||||||| ||||| |||||  | ||||
Sbjct: 17  tgaaaacactagaagtttatgatgagacggccaagttcctaagagagctagaaatggatg 76

                                                                       
Query: 310 atgatgctcccacaaaagctattattggcaccataggggatgttgattcctatcagctac 369
           |||||  || |||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct: 77  atgattgtctcacaaaagctattattggtaccataggtgacgttgattcctaccagctgc 136

                                                                       
Query: 370 cagatgctaaaggttacagcagtctgatgcggtatttgttgggcatcactgaggaggaac 429
           ||||||||||||||||||||||||| ||||| || ||| |||||||||| | ||||||||
Sbjct: 137 cagatgctaaaggttacagcagtctaatgcgatacttgctgggcatcacggtggaggaac 196

                                    
Query: 430 gccagc-aaggcgtgaagagatact 453
           |||||| ||| ||||||||||||||
Sbjct: 197 gccagcaaagacgtgaagagatact 221

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>dbj|AK060417.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F01, full
           insert sequence
          Length = 675

 Score =  192 bits (97), Expect = 7e-46
 Identities = 179/205 (87%), Gaps = 1/205 (0%)
 Strand = Plus / Plus

                                                                       
Query: 250 tgaaaacactagaggtctatgatgggactgcaaagttcctcagagaactagaggtagatg 309
           ||||||||||||| || ||||||| ||| || |||||||| ||||| |||||  | ||||
Sbjct: 17  tgaaaacactagaagtttatgatgagacggccaagttcctaagagagctagaaatggatg 76

                                                                       
Query: 310 atgatgctcccacaaaagctattattggcaccataggggatgttgattcctatcagctac 369
           |||||  || |||||||||||||||||| |||||||| || ||||||||||| ||||| |
Sbjct: 77  atgattgtctcacaaaagctattattggtaccataggtgacgttgattcctaccagctgc 136

                                                                       
Query: 370 cagatgctaaaggttacagcagtctgatgcggtatttgttgggcatcactgaggaggaac 429
           ||||||||||||||||||||||||| ||||| || ||| |||||||||| | ||||||||
Sbjct: 137 cagatgctaaaggttacagcagtctaatgcgatacttgctgggcatcacggtggaggaac 196

                                    
Query: 430 gccagc-aaggcgtgaagagatact 453
           |||||| ||| ||||||||||||||
Sbjct: 197 gccagcaaagacgtgaagagatact 221

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>ref|NM_112804.3| Arabidopsis thaliana ATPREP1/ATZNMP; metalloendopeptidase AT3G19170
            (ATPREP1/ATZNMP) mRNA, complete cds
          Length = 3466

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 21   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 80
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2725 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2784

                                                                        
Query: 81   caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 140
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2785 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2844

                                                                        
Query: 141  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 200
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2845 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2904

                                                                       
Query: 201  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 259
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2905 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2963



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 324  aaagctattattggcaccataggggatgttgattcctatcagctaccagatgctaaaggt 383
            |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| ||||||
Sbjct: 3028 aaagctattattggcaccatcggtgatgttgattcataccaattacctgatgccaaaggt 3087

                     
Query: 384  tacagcagt 392
            || ||||||
Sbjct: 3088 tatagcagt 3096

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>gb|AY091051.1| Arabidopsis thaliana putative metalloprotease (At3g19170) mRNA,
            complete cds
          Length = 3475

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 21   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 80
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2723 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2782

                                                                        
Query: 81   caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 140
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2783 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2842

                                                                        
Query: 141  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 200
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2843 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2902

                                                                       
Query: 201  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 259
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2903 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2961



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 324  aaagctattattggcaccataggggatgttgattcctatcagctaccagatgctaaaggt 383
            |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| ||||||
Sbjct: 3026 aaagctattattggcaccatcggtgatgttgattcataccaattacctgatgccaaaggt 3085

                     
Query: 384  tacagcagt 392
            || ||||||
Sbjct: 3086 tatagcagt 3094

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>gb|AY090240.1| Arabidopsis thaliana AT3g19170/MVI11_8 mRNA, complete cds
          Length = 3463

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 21   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 80
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2725 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2784

                                                                        
Query: 81   caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 140
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2785 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2844

                                                                        
Query: 141  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 200
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2845 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2904

                                                                       
Query: 201  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 259
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2905 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2963



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 324  aaagctattattggcaccataggggatgttgattcctatcagctaccagatgctaaaggt 383
            |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| ||||||
Sbjct: 3028 aaagctattattggcaccatcggtgatgttgattcataccaattacctgatgccaaaggt 3087

                     
Query: 384  tacagcagt 392
            || ||||||
Sbjct: 3088 tatagcagt 3096

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>gb|BT006362.1| Arabidopsis thaliana At3g19170/MVI11_8 gene, complete cds
          Length = 3243

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 21   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 80
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2659 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2718

                                                                        
Query: 81   caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 140
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2719 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2778

                                                                        
Query: 141  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 200
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2779 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2838

                                                                       
Query: 201  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 259
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2839 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2897



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 324  aaagctattattggcaccataggggatgttgattcctatcagctaccagatgctaaaggt 383
            |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| ||||||
Sbjct: 2962 aaagctattattggcaccatcggtgatgttgattcataccaattacctgatgccaaaggt 3021

                     
Query: 384  tacagcagt 392
            || ||||||
Sbjct: 3022 tatagcagt 3030

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>gb|BT002372.1| Arabidopsis thaliana clone U19043 putative metalloprotease
            (At3g19170) mRNA, complete cds
          Length = 3274

 Score =  101 bits (51), Expect = 2e-18
 Identities = 192/239 (80%)
 Strand = Plus / Plus

                                                                        
Query: 21   aatgaagccattgttatccctacacaggttaattatgttggaaaagctggaaacctatac 80
            |||||||||||||| || || || ||||| || |||||||||||||| || ||| |||||
Sbjct: 2659 aatgaagccattgtaataccaacccaggtaaactatgttggaaaagcgggtaacatatac 2718

                                                                        
Query: 81   caaagtggataccagctcaatggaagtgcctatgtcatatccaagcacataagcaacaca 140
               |  || ||  ||||  |||| ||||| ||||| ||||| ||||| || ||||| |||
Sbjct: 2719 agcaccgggtatgagcttgatggcagtgcgtatgttatatcaaagcatattagcaataca 2778

                                                                        
Query: 141  tggttatgggaccgcgttcgagttagtggtggagcatatggagggttttgtgattttgac 200
            ||||||||||| || ||||| || |||||||| ||||||||||| || |||||||| || 
Sbjct: 2779 tggttatgggatcgtgttcgtgtaagtggtggtgcatatggaggtttctgtgatttcgat 2838

                                                                       
Query: 201  actcattcaggtgtcttttcctatttgtcataccgtgatccgaacttgctgaaaacact 259
             | |||||||| || ||||| || || || ||||| ||||| |||||| |||| |||||
Sbjct: 2839 tcgcattcaggagtattttcttacttatcgtaccgggatccaaacttgttgaagacact 2897



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 324  aaagctattattggcaccataggggatgttgattcctatcagctaccagatgctaaaggt 383
            |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| ||||||
Sbjct: 2962 aaagctattattggcaccatcggtgatgttgattcataccaattacctgatgccaaaggt 3021

                     
Query: 384  tacagcagt 392
            || ||||||
Sbjct: 3022 tatagcagt 3030

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>dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11
          Length = 81875

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 83/97 (85%)
 Strand = Plus / Minus

                                                                         
Query: 100   atggaagtgcctatgtcatatccaagcacataagcaacacatggttatgggaccgcgttc 159
             |||| ||||| ||||| ||||| ||||| || ||||| |||||||||||||| || ||||
Sbjct: 21444 atggcagtgcgtatgttatatcaaagcatattagcaatacatggttatgggatcgtgttc 21385

                                                  
Query: 160   gagttagtggtggagcatatggagggttttgtgattt 196
             | || |||||||| ||||||||||| || ||||||||
Sbjct: 21384 gtgtaagtggtggtgcatatggaggtttctgtgattt 21348



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                         
Query: 324   aaagctattattggcaccataggggatgttgattcctatcagctaccagatgctaaaggt 383
             |||||||||||||||||||| || ||||||||||| || ||  |||| ||||| ||||||
Sbjct: 21135 aaagctattattggcaccatcggtgatgttgattcataccaattacctgatgccaaaggt 21076

                     
Query: 384   tacagcag 391
             || |||||
Sbjct: 21075 tatagcag 21068

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>ref|NM_180631.1| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.2 mRNA, complete
            cds
          Length = 3432

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 111  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 170
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 171  ggagcatatggagggttttgtgattttga 199
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>ref|NM_180630.1| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.1 mRNA, complete
            cds
          Length = 3582

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 111  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 170
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 171  ggagcatatggagggttttgtgattttga 199
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>ref|NM_103851.3| Arabidopsis thaliana ATPREP2; metalloendopeptidase AT1G49630
            (ATPREP2) transcript variant AT1G49630.3 mRNA, complete
            cds
          Length = 3576

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 111  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 170
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 171  ggagcatatggagggttttgtgattttga 199
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>gb|AY074305.1| Arabidopsis thaliana putative hydrogenase protein (At1g49630) mRNA,
            complete cds
          Length = 3598

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 111  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 170
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2791 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2850

                                         
Query: 171  ggagcatatggagggttttgtgattttga 199
            || ||||||||||| |  |||||||||||
Sbjct: 2851 ggtgcatatggaggttcctgtgattttga 2879

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>gb|BT004376.1| Arabidopsis thaliana clone U19879 putative hydrogenase (At1g49630)
            mRNA, complete cds
          Length = 3274

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 111  tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 170
            ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 2746 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 2805

                                         
Query: 171  ggagcatatggagggttttgtgattttga 199
            || ||||||||||| |  |||||||||||
Sbjct: 2806 ggtgcatatggaggttcctgtgattttga 2834

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>gb|AC011807.4|AC011807 Arabidopsis thaliana chromosome I BAC F14J22 genomic sequence, complete
             sequence
          Length = 104679

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                         
Query: 111   tatgtcatatccaagcacataagcaacacatggttatgggaccgcgttcgagttagtggt 170
             ||||| ||||| ||||| || || ||||||||||||||||| || ||||| || ||||||
Sbjct: 67499 tatgttatatcaaagcatattagtaacacatggttatgggatcgtgttcgtgtaagtggt 67558

                                          
Query: 171   ggagcatatggagggttttgtgattttga 199
             || ||||||||||| |  |||||||||||
Sbjct: 67559 ggtgcatatggaggttcctgtgattttga 67587

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>gb|AC091902.2| Homo sapiens chromosome 5 clone RP11-16L24, complete sequence
          Length = 188877

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 427    aacgccagcaaggcgtgaaga 447
              |||||||||||||||||||||
Sbjct: 174995 aacgccagcaaggcgtgaaga 174975

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>gb|AC091897.4| Homo sapiens chromosome 5 clone RP11-149M3, complete sequence
          Length = 27269

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 427   aacgccagcaaggcgtgaaga 447
             |||||||||||||||||||||
Sbjct: 18940 aacgccagcaaggcgtgaaga 18960

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>gb|AC102103.10| Mus musculus chromosome 15, clone RP23-82K1, complete sequence
          Length = 237423

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 201   actcattcaggtgtcttttc 220
             ||||||||||||||||||||
Sbjct: 81162 actcattcaggtgtcttttc 81143

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>gb|BC036982.1| Mus musculus thyrotroph embryonic factor, transcript variant 1, mRNA
            (cDNA clone MGC:46858 IMAGE:4976241), complete cds
          Length = 4222

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3460 actcattcaggtgtcttttc 3441

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>gb|BC017689.1| Mus musculus thyrotroph embryonic factor, transcript variant 2, mRNA
            (cDNA clone MGC:19233 IMAGE:4242534), complete cds
          Length = 4018

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3258 actcattcaggtgtcttttc 3239

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>ref|NM_153484.1| Mus musculus thyrotroph embryonic factor (Tef), transcript variant 2,
            mRNA
          Length = 4018

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3258 actcattcaggtgtcttttc 3239

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>ref|NM_017376.2| Mus musculus thyrotroph embryonic factor (Tef), transcript variant 1,
            mRNA
          Length = 4222

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3460 actcattcaggtgtcttttc 3441

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>gb|AY540631.1| Mus musculus thyrotroph embryonic factor alpha isoform (Tef) mRNA,
            complete cds, alternatively spliced
          Length = 4064

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3480 actcattcaggtgtcttttc 3461

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>gb|AC005486.2| Homo sapiens PAC clone RP5-1070G24 from 7, complete sequence
          Length = 157075

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 24     gaagccattgttatccctacacag 47
              ||||| ||||||||||||||||||
Sbjct: 155215 gaagcaattgttatccctacacag 155238

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>gb|AC132339.3| Mus musculus BAC clone RP24-165O21 from chromosome 5, complete sequence
          Length = 152574

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 406    tgttgggcatcactgaggag 425
              ||||||||||||||||||||
Sbjct: 113570 tgttgggcatcactgaggag 113551

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>gb|AC004413.2| Homo sapiens PAC clone RP4-650P9 from 7, complete sequence
          Length = 114827

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 14     ttctgttaatgaagccattgttat 37
              |||||||||||||||||| |||||
Sbjct: 106110 ttctgttaatgaagccatagttat 106087

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>emb|AL359633.15| Human DNA sequence from clone RP11-795J1 on chromosome 6 Contains the 5'
              end of the DSCR1L1 gene for Down syndrome critical region
              gene 1-like 1 (MCIP2 ZAKI-4), three novel genes and a CpG
              island, complete sequence
          Length = 199200

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 420    gaggaggaacgccagcaagg 439
              ||||||||||||||||||||
Sbjct: 150711 gaggaggaacgccagcaagg 150692

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>gb|AC135204.3| Rattus norvegicus 1 BAC CH230-381D2 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 183322

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    tcccacaaaagctattattg 336
              ||||||||||||||||||||
Sbjct: 109630 tcccacaaaagctattattg 109649

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>emb|BX119976.8| Zebrafish DNA sequence from clone CH211-196F5 in linkage group 20
              Contains the gene for a novel protein (zgc:63952), the 3'
              end of the gene for a novel protein similar to mouse and
              human importin 4 (IPO4), three genes for transposase, a
              novel gene and six CpG islands, complete sequence
          Length = 190000

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     aaagctggaaacctatacca 82
              ||||||||||||||||||||
Sbjct: 144259 aaagctggaaacctatacca 144240

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>dbj|AK141606.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched
            library, clone:C630043H05 product:thyrotroph embryonic
            factor, full insert sequence
          Length = 4071

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3323 actcattcaggtgtcttttc 3304

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>dbj|AK147965.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library,
            clone:G270119N11 product:thyrotroph embryonic factor,
            full insert sequence
          Length = 4175

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3430 actcattcaggtgtcttttc 3411

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>dbj|AK154472.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630037E11
            product:thyrotroph embryonic factor, full insert sequence
          Length = 4186

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3441 actcattcaggtgtcttttc 3422

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>gb|AC158970.3| Mus musculus chromosome 15, clone RP24-186A9, complete sequence
          Length = 208509

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   actcattcaggtgtcttttc 220
             ||||||||||||||||||||
Sbjct: 27794 actcattcaggtgtcttttc 27813

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>dbj|AK009518.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310028D20 product:unclassifiable, full
           insert sequence
          Length = 1738

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 actcattcaggtgtcttttc 220
           ||||||||||||||||||||
Sbjct: 993 actcattcaggtgtcttttc 974

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>gb|BC023410.1| Mus musculus thyrotroph embryonic factor, mRNA (cDNA clone
            IMAGE:5054763), partial cds
          Length = 2688

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 1926 actcattcaggtgtcttttc 1907

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>dbj|AK010205.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
           library, clone:2310076L22 product:unclassifiable, full
           insert sequence
          Length = 813

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 actcattcaggtgtcttttc 220
           ||||||||||||||||||||
Sbjct: 68  actcattcaggtgtcttttc 49

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>dbj|AK042146.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630063M24 product:thyrotroph embryonic
            factor, full insert sequence
          Length = 4401

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  actcattcaggtgtcttttc 220
            ||||||||||||||||||||
Sbjct: 3656 actcattcaggtgtcttttc 3637

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>dbj|AK085437.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630024P09 product:unclassifiable, full
           insert sequence
          Length = 1388

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 201 actcattcaggtgtcttttc 220
           ||||||||||||||||||||
Sbjct: 643 actcattcaggtgtcttttc 624

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>gb|BC094169.1| Xenopus laevis cDNA clone MGC:115330 IMAGE:6948906, complete cds
          Length = 4388

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 411  ggcatcactgaggaggaacg 430
            ||||||||||||||||||||
Sbjct: 1160 ggcatcactgaggaggaacg 1179

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>gb|AC129207.4| Mus musculus chromosome 5 clone RP24-280N5, complete sequence
          Length = 165994

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 406    tgttgggcatcactgaggag 425
              ||||||||||||||||||||
Sbjct: 117870 tgttgggcatcactgaggag 117889


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,726,353
Number of Sequences: 3902068
Number of extensions: 3726353
Number of successful extensions: 70664
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70570
Number of HSP's gapped (non-prelim): 89
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result