>YO12_CAEEL (P34668) Putative ATP-dependent RNA helicase ZK686.2 in chromosome|
           III (EC 3.6.1.-)
          Length = 593

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
 Frame = -3

Query: 384 TWMPI---------FLVLSPPTLTP--ALVSRSRVMAKVPDFLMSELAAVGSTPSAAAET 238
           TW P+         F + SPP L P    ++      K   +++  LAAVGS PS   + 
Sbjct: 132 TWFPVQYAVLPSLFFEIRSPPPLRPRDVAIAAPTGSGKTICYVLPVLAAVGSKPSKILQA 191

Query: 237 VALMTVMLLAS 205
           V L+ V  L +
Sbjct: 192 VILVPVQTLVA 202

>RPOA_CORJK (Q4JTC2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 337

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 188 VPGFLHEASNITVIKATVSAAALGVDPTAASSD--------IKKSGTFAIT-LDLETKAG 340
           + G LHE + I  +K  VS   L +     SSD        I+K G   +T  D+E  AG
Sbjct: 56  IEGVLHEFTTIPGVKEDVSDIILNIKSLVLSSDSDEPVSMFIRKEGPGEVTGADVEVPAG 115

Query: 341 VKV 349
           V+V
Sbjct: 116 VEV 118

>RPOA_CORDI (Q6NJ63) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 338

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 188 VPGFLHEASNITVIKATVSAAALGVDPTAASSD--------IKKSGTFAITL-DLETKAG 340
           + G LHE + I  +K  VS   L +     SSD        ++K G   IT  D+E  AG
Sbjct: 56  IDGVLHEFTTINGVKEDVSDIILNIKGLVLSSDSDEPVVMYLRKEGAGVITAGDIEPPAG 115

Query: 341 VKV 349
           V++
Sbjct: 116 VEI 118

>FRZF_MYXXA (P31759) Protein methyltransferase frzF (EC 2.1.1.80)|
          Length = 593

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
 Frame = -3

Query: 360 LSPPTLTPALVSRSRVMAKVPDF---------LMSELAAVGSTPSAAAETVALMTVML 214
           +SP +  PA+ +RSRV A++P           + +EL AV +TP A    V     +L
Sbjct: 364 VSPHSPLPAIAARSRVTAELPTVGSVDSARPRITTELPAVATTPRAPTVEVPAWPTLL 421

>GMEB1_HUMAN (Q9Y692) Glucocorticoid modulatory element-binding protein 1|
           (GMEB-1) (Parvovirus initiation factor p96) (PIF p96)
           (DNA-binding protein p96PIF)
          Length = 573

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 32/131 (24%), Positives = 50/131 (38%), Gaps = 6/131 (4%)
 Frame = -3

Query: 402 LMPSQCTWMPIFLVLSPPTLTPALVSRSRVMAKVPDFLMSELAAVGSTP------SAAAE 241
           L PS     P F V+SP T+TP  V +S  M  +P   +S+    GS+P       +  +
Sbjct: 391 LSPSPPVQQPQFTVISPITITP--VGQSFSMGNIPVATLSQ----GSSPVTVHTLPSGPQ 444

Query: 240 TVALMTVMLLASCRNPGTVASPSGXXXXXXXXXXVKSSYR*TSFLLGFLAVSVKSMESVS 61
                TV+  A   +P TV               ++      +       V + +MES  
Sbjct: 445 LFRYATVVSSAKSSSPDTVTIHPSSSLALLSSTAMQDGSTLGNMTTMVSPVELVAMESGL 504

Query: 60  AGAVAELERLS 28
             A+  +E  S
Sbjct: 505 TSAIQAVESTS 515

>FLJK_CAUCR (P18913) Flagellin fljK (25 kDa flagellin)|
          Length = 273

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 206 EASNITVIKATVSAAALGVDPTAASSDIKKSGTFAITLDLETKAGV-KVGGLKTKKIGIQ 382
           + S  TV   T+S A +G+  T+  +    + T   T+D   +    K+  L T  +G+ 
Sbjct: 153 DGSGFTVNAKTISLAGIGLTTTSTFTTAAAAKTMIGTIDTALQTATNKLASLGTSSVGLD 212

Query: 383 VH 388
            H
Sbjct: 213 TH 214

>SERC_MYCTU (P63514) Putative phosphoserine aminotransferase (EC 2.6.1.52)|
           (PSAT)
          Length = 376

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -3

Query: 345 LTPALVSRSRVMAK----VPDFLMSELAAVGSTPSAAAETVALMTVMLLA 208
           ++PA +SR   +A     VPDFL   +A   S  +    T A+ T+ LLA
Sbjct: 213 MSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLA 262

>SERC_MYCBO (P63515) Putative phosphoserine aminotransferase (EC 2.6.1.52)|
           (PSAT)
          Length = 376

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -3

Query: 345 LTPALVSRSRVMAK----VPDFLMSELAAVGSTPSAAAETVALMTVMLLA 208
           ++PA +SR   +A     VPDFL   +A   S  +    T A+ T+ LLA
Sbjct: 213 MSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTPAIATLALLA 262

>CD5L_HUMAN (O43866) CD5 antigen-like precursor (SP-alpha) (CT-2)|
           (IgM-associated peptide)
          Length = 347

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 237 VALMTVMLLASCRNPGTVASPSG 169
           +AL+  ++LA C  PG +ASPSG
Sbjct: 1   MALLFSLILAICTRPGFLASPSG 23

>GMEB1_MOUSE (Q9JL60) Glucocorticoid modulatory element-binding protein 1|
           (GMEB-1)
          Length = 562

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 32/112 (28%), Positives = 45/112 (40%), Gaps = 7/112 (6%)
 Frame = -3

Query: 375 PIFLVLSPPTLTPALVSRSRVMAKVPDFLMSELAAVGSTP------SAAAETVALMTVML 214
           P F V+SP T+TP  V +S  M  +P   +S+    GS+P       +  +     TV+ 
Sbjct: 389 PQFTVISPITITP--VGQSFSMGNIPVATLSQ----GSSPVTVHTLPSGPQLFRYATVVS 442

Query: 213 LASCRNPGTVA-SPSGXXXXXXXXXXVKSSYR*TSFLLGFLAVSVKSMESVS 61
            A   +P TV   PS              S       LG +A  V  ME V+
Sbjct: 443 SAKSNSPDTVTIHPSSSLALLSSTSMQDGS------SLGNMATMVSPMELVA 488

>BCAR3_MOUSE (Q9QZK2) Breast cancer anti-estrogen resistance protein 3|
           (p130Cas-binding protein AND-34)
          Length = 820

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 393 SQCTWMPIFLVLSPPTLTPALVSR 322
           S C   P+F   S PTL+PALV R
Sbjct: 353 SPCPSSPVFRTGSEPTLSPALVRR 376

>RPOA_CORGL (Q8NSV2) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP|
           alpha subunit) (Transcriptase alpha chain) (RNA
           polymerase alpha subunit)
          Length = 338

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
 Frame = +2

Query: 188 VPGFLHEASNITVIKATVSAAALGVDPTAASSD--------IKKSGTFAITL-DLETKAG 340
           + G LHE + I+ +K  VS   L +     SSD        + K G   +T  D++  AG
Sbjct: 56  IDGVLHEFTTISGVKEDVSDIILNIKGLVLSSDSDEPVVMQLVKEGPGVVTAGDIQPPAG 115

Query: 341 VKV 349
           V++
Sbjct: 116 VEI 118

>Y1379_METKA (Q8TVL0) UPF0219 protein MK1379|
          Length = 350

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
 Frame = +2

Query: 233 ATVSAAALGVDPTAASSDIK---KSGTFAITLDLETKAGVKVGGLKTKKIGIQVHCD 394
           AT+ AAA+G  P   ++D +   K+GT AI    +T AG+   G+   K G+ +  D
Sbjct: 95  ATIVAAAIGATPDLTAADYEFACKAGTAAI----QTCAGLVASGM--IKYGLAIGAD 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,842,602
Number of Sequences: 219361
Number of extensions: 373407
Number of successful extensions: 1565
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)