ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet90f12 |
|---|---|
| Clone Library Name | barley_pub |
>ATX1_HUMAN (P54253) Ataxin-1 (Spinocerebellar ataxia type 1 protein)| Length = 816 Score = 30.0 bits (66), Expect = 1.4 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 3/97 (3%) Frame = -3 Query: 336 SAPWRSVARGTLKAPVVSRAPTVLLSYWPSMFLHLIATWRPL---KVSSALMFFLVQSAH 166 SAP TL A + P +S P + HL T++ + + S F+ + Sbjct: 91 SAPRSVPVATTLPAAYATPQPGTPVS--PVQYAHLPHTFQFIGSSQYSGTYASFI--PSQ 146 Query: 165 LARPTTTDVASALATAIASRTPRTSALVAAMSELLAD 55 L PT V SA+A+A + TP + + A S LLA+ Sbjct: 147 LIPPTANPVTSAVASAAGATTPSQRSQLEAYSTLLAN 183
>K0853_HUMAN (Q5T200) Protein KIAA0853| Length = 1668 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/97 (23%), Positives = 29/97 (29%) Frame = +1 Query: 85 ESTRPGRPAGDXXXXXXXXXXXXXXXXXXXLHKEEHQGRGNLQRSPGGDQVQEHRWPVRE 264 E TR G+ G H R + S G +Q H R Sbjct: 292 EKTRDGKDRGRDFERQREKRDKPRSTSPAGQHHSPISSRHHSSSSQSGSSIQRHSPSPRR 351 Query: 265 QNGGCPGYHRCLQRAPGH*PPRRRLCRSAPQRRLNTP 375 + P Y R L PP RR P L++P Sbjct: 352 KRTPSPSYQRTLT------PPLRRSASPYPSHSLSSP 382
>TATC_ECOLI (P69423) Sec-independent protein translocase protein tatC| Length = 257 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 21/96 (21%) Frame = -3 Query: 336 SAPWRSVARGTLKAPVVSRAPTVLLSYW----PSMFLHLIATWRPLKVSSALMF------ 187 ++P+ + + T ++ AP +L W P+++ H PL VSS+L+F Sbjct: 64 ASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAF 123 Query: 186 -----------FLVQSAHLARPTTTDVASALATAIA 112 FL +A +TD+AS L+ +A Sbjct: 124 AYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA 159
>TATC_ECOL6 (Q8FBI6) Sec-independent protein translocase protein tatC| Length = 257 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 21/96 (21%) Frame = -3 Query: 336 SAPWRSVARGTLKAPVVSRAPTVLLSYW----PSMFLHLIATWRPLKVSSALMF------ 187 ++P+ + + T ++ AP +L W P+++ H PL VSS+L+F Sbjct: 64 ASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAF 123 Query: 186 -----------FLVQSAHLARPTTTDVASALATAIA 112 FL +A +TD+AS L+ +A Sbjct: 124 AYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA 159
>TATC_ECO57 (P69424) Sec-independent protein translocase protein tatC| Length = 257 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 21/96 (21%) Frame = -3 Query: 336 SAPWRSVARGTLKAPVVSRAPTVLLSYW----PSMFLHLIATWRPLKVSSALMF------ 187 ++P+ + + T ++ AP +L W P+++ H PL VSS+L+F Sbjct: 64 ASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAF 123 Query: 186 -----------FLVQSAHLARPTTTDVASALATAIA 112 FL +A +TD+AS L+ +A Sbjct: 124 AYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA 159
>KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (rElk2) (Brain-specific eag-like channel 1) (BEC1) Length = 1087 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPP 365 PW PP + PWP +TA S S + PP Sbjct: 980 PWGPPASQSSPWP-RATALWTSTSDSEPP 1007
>KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (mElk2) Length = 1087 Score = 29.6 bits (65), Expect = 1.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPP 365 PW PP + PWP +TA S S + PP Sbjct: 980 PWGPPASQSSPWP-RATALWTSTSDSEPP 1007
>KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H member 3| (Voltage-gated potassium channel subunit Kv12.2) (Ether-a-go-go-like potassium channel 2) (ELK channel 2) (ELK2) (Brain-specific eag-like channel 1) (BEC1) Length = 1083 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPP 365 PW PP + PWP +TA S S + PP Sbjct: 976 PWGPPASQSSPWP-RATAFWTSTSDSEPP 1003
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein| 15) (One-twenty two protein) Length = 977 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/54 (35%), Positives = 27/54 (50%) Frame = +1 Query: 199 RGNLQRSPGGDQVQEHRWPVREQNGGCPGYHRCLQRAPGH*PPRRRLCRSAPQR 360 RG+ DQ ++ R P E++GG R L R+P PR+R C +P R Sbjct: 627 RGDRDLPSSRDQPRKRRLP--EESGG-----RHLDRSPESDRPRKRHCAPSPDR 673
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 276 VPWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 +P +PP+PS P P+ PT+ PP VP Sbjct: 196 MPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVP 230
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 276 VPWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 +P +PP+PS P P+ PT+ PP VP Sbjct: 196 MPSLPPMPSIPPIPVPPPVPTLPPVPPVPPIPPVP 230
>IE18_PRVIF (P11675) Immediate-early protein IE180| Length = 1461 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPPQHA 374 P PP P+A P P S+A S S+ A P A Sbjct: 425 PPSPPAPAAAPRPSASSASATSSSAAASPAPA 456
>PO121_MOUSE (Q8K3Z9) Nuclear envelope pore membrane protein POM 121 (Pore| membrane protein of 121 kDa) Length = 1200 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPPQHA 374 P P S P P +S+A T + SSTAPP A Sbjct: 706 PATPKSESDSPLPSSSSAATTASSSTAPPTAA 737
>K1683_HUMAN (Q9H0B3) Protein KIAA1683| Length = 1180 Score = 28.5 bits (62), Expect = 4.1 Identities = 20/83 (24%), Positives = 37/83 (44%) Frame = -3 Query: 330 PWRSVARGTLKAPVVSRAPTVLLSYWPSMFLHLIATWRPLKVSSALMFFLVQSAHLARPT 151 P ++ T+ R+P + P L + T P ++ S ++++ LA PT Sbjct: 467 PLQTCLSATMSKTSSQRSPVGVTKPSPQTRLPAMITKTPAQLRSVAT--ILKTLCLASPT 524 Query: 150 TTDVASALATAIASRTPRTSALV 82 +V + A+A+ TP TS + Sbjct: 525 VANVKAPPQVAVAAGTPNTSGSI 547
>RBM12_MOUSE (Q8R4X3) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 1002 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 276 VPWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 +P +PP+PS P P+ PT+ PP VP Sbjct: 196 MPSLPPLPSIPPIPVPPPVPTLPPVPPVPPIPPVP 230 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 276 VPWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 VP +PPVP P P P+V +T PP +P Sbjct: 214 VPTLPPVPPVPPIP---PVPSVPPMTTLPPMSGMP 245
>PDC6I_XENLA (Q9W6C5) Programmed cell death 6-interacting protein (Signal| transduction protein Xp95) Length = 867 Score = 28.5 bits (62), Expect = 4.1 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 5/36 (13%) Frame = +3 Query: 288 PPVPSACPWPLTST-----APTVSLSSTAPPQHAVP 380 P +PSA P P ++ APT + S+ PP + +P Sbjct: 764 PAMPSASPVPASAAQASNPAPTAAADSSQPPSNTIP 799
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 3/64 (4%) Frame = +1 Query: 178 HKEEHQGRGNLQRSPGGDQVQEHRWP---VREQNGGCPGYHRCLQRAPGH*PPRRRLCRS 348 H H GRG + SPG + R P VR + R RAP P RL R+ Sbjct: 2223 HHHHHPGRGPGRVSPGVSARRRRRGPVARVRPARAPALAHARARARAPARLLPELRLRRA 2282 Query: 349 APQR 360 R Sbjct: 2283 RRPR 2286
>IE18_PRVKA (P33479) Immediate-early protein IE180| Length = 1446 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAP-PQHAVP 380 P PP P+A P P S+A + + +S AP P+ A P Sbjct: 417 PPSPPAPAAAPRPSASSASSSAAASPAPAPEPARP 451
>DAN4_YEAST (P47179) Cell wall protein DAN4 precursor| Length = 1161 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/25 (52%), Positives = 14/25 (56%) Frame = +3 Query: 288 PPVPSACPWPLTSTAPTVSLSSTAP 362 P S P TST PT S +STAP Sbjct: 249 PTTSSTSTTPTTSTTPTTSTTSTAP 273
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 28.1 bits (61), Expect = 5.4 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 P +PP P+ P P+ P + PPQ A+P Sbjct: 966 PVLPPQPTRPPQPVLPPQPMLPPQPVLPPQPALP 999 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 P +PP P P P P + T PPQ +P Sbjct: 948 PTLPPQPVLPPQPTLPPQPVLPPQPTRPPQPVLP 981 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 P +PP P+ P P+ PT+ PPQ P Sbjct: 942 PALPPQPTLPPQPVLPPQPTLPPQPVLPPQPTRP 975
>GLR21_ARATH (O04660) Glutamate receptor 2.1 precursor (Ligand-gated ion channel| 2.1) (AtGLR3) Length = 901 Score = 27.7 bits (60), Expect = 7.0 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +3 Query: 282 WIPPVPSACPWPLTSTAPTVSLS 350 W P+ +CP PLT+ P S+S Sbjct: 793 WFKPIDESCPDPLTNPDPNPSVS 815
>RIN3_MOUSE (P59729) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 980 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTA--PPQHA 374 P PPVP A P P + PT L+ A PP H+ Sbjct: 293 PLAPPVPPAGPLPNSPLTPTSHLAPHAPGPPGHS 326
>VRP1_YEAST (P37370) Verprolin| Length = 817 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 P PP+PS+ P TS AP L TAPP ++P Sbjct: 305 PSQPPLPSSAPPIPTSHAP--PLPPTAPPPPSLP 336
>LAT52_LYCES (P13447) Anther-specific protein LAT52 precursor| Length = 161 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Frame = +2 Query: 149 VVGLAKCADC-TRKNIKAEETFNGLQVAIKCKNIDGQYESKTV-GALDTTGAFSVPLATD 322 V G C C + K E G V ++C+NI + E+ +V G D G + + + D Sbjct: 29 VEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGD 88 Query: 323 LHGADC 340 C Sbjct: 89 HENDIC 94
>GAK10_HUMAN (P87889) HERV-K_5q33.3 provirus ancestral Gag polyprotein (Gag| polyprotein) (HERV-K10 Gag protein) (HERV-K107 Gag protein) [Contains: Matrix protein; Capsid protein; Nucleocapsid protein] Length = 665 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 1/38 (2%) Frame = +1 Query: 253 PVREQNGGCPGYHRCLQ-RAPGH*PPRRRLCRSAPQRR 363 P E G PG Q RAP H PP RRL AP R Sbjct: 221 PPPESQYGYPGMPPAPQGRAPYHQPPTRRLNPMAPPSR 258
>BBC1_YEAST (P47068) Myosin tail region-interacting protein MTI1 (BBC1 protein)| Length = 1157 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/34 (38%), Positives = 16/34 (47%) Frame = +3 Query: 279 PWIPPVPSACPWPLTSTAPTVSLSSTAPPQHAVP 380 P +PP P A P P V S+APP + P Sbjct: 713 PPVPPAPPALSAPSVPPVPPVPPVSSAPPALSAP 746
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%) Frame = +3 Query: 288 PPVPSACPWP-----LTSTAPTVSLSSTAPPQHAVP 380 PP+P+A P P + ++AP ++ + AP Q +VP Sbjct: 2056 PPLPTAPPQPASAPAIPASAPPITSPTIAPAQPSVP 2091
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = +3 Query: 273 WVPWIPPVPSACPWPLTSTAPTVSLSSTAPP 365 W W P P PWP+ P S APP Sbjct: 45 WPLWPRPYPQ--PWPMNPPTPDPSPKPVAPP 73
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 5/36 (13%) Frame = +3 Query: 288 PPVPSACPWP-----LTSTAPTVSLSSTAPPQHAVP 380 PP+P+A P P + ++AP ++ + AP Q +VP Sbjct: 2049 PPLPAAPPQPASTPAIPASAPPITSPTIAPAQPSVP 2084
>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3| precursor (LTBP-3) Length = 1268 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Frame = +1 Query: 214 RSPGGDQVQEHRWPVREQNGGC---PGYHRCLQRAPGH*PPRRRLCRSAPQRRLNTPC 378 R P + + E R P +G C PG +C+ PG+ CR + TPC Sbjct: 693 RPPICEDIDECRDPSTCPDGKCENKPGSFKCIACQPGYRSQGGGACRDVNECSEGTPC 750
>WA22_MYCTU (P0A686) WAG22 antigen precursor| Length = 914 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = -2 Query: 364 GGAVELSDTVGAVEVSGQGHAEGTGGIQG 278 GGA L T G GQGH G GG G Sbjct: 250 GGAGGLFTTGGVGGAGGQGHTGGAGGAGG 278
>WA22_MYCBO (P0A687) WAG22 antigen precursor| Length = 914 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/29 (48%), Positives = 14/29 (48%) Frame = -2 Query: 364 GGAVELSDTVGAVEVSGQGHAEGTGGIQG 278 GGA L T G GQGH G GG G Sbjct: 250 GGAGGLFTTGGVGGAGGQGHTGGAGGAGG 278
>BZNB_PSEFL (P51853) Benzaldehyde lyase (EC 4.1.2.38) (Benzoin aldolase) (BL)| (BZL) Length = 563 Score = 27.3 bits (59), Expect = 9.2 Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 12/90 (13%) Frame = -3 Query: 312 RGTLKAPVVSRAPTVLLSYWPSMFLHLIATWRPLKVSSALMFFLVQSAHLARPTTTDVAS 133 R L AP R P +L W + + S ++ LV SAH ARP D+ Sbjct: 147 RAALSAP---RGPVLLDLPWDILM-------NQIDEDSVIIPDLVLSAHGARPDPADLDQ 196 Query: 132 ALAT------------AIASRTPRTSALVA 79 ALA + ASRT R +AL A Sbjct: 197 ALALLRKAERPVIVLGSEASRTARKTALSA 226 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,717,981 Number of Sequences: 219361 Number of extensions: 1033723 Number of successful extensions: 4012 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3583 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3980 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
