ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet90f05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK105795.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A02, full insert sequence Length = 1301 Score = 232 bits (117), Expect = 8e-58 Identities = 309/373 (82%) Strand = Plus / Plus Query: 73 atccagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccat 132 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||||| Sbjct: 314 atccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccac 373 Query: 133 gtcttcaaccccggccagtacactgaggacatgcgcgacatctccctggagcatgcccgc 192 ||| ||||||| ||||| | || ||||||||||| ||| | |||| |||| ||| | Sbjct: 374 gtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgac 433 Query: 193 ctccatagccgggccctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctc 252 ||| | ||||| |||| ||| ||||| |||||||| || || ||||||||||||||| Sbjct: 434 ctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctc 493 Query: 253 ggcgtcgtccggcacgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaa 312 || ||||| || ||| || || |||||||| |||||| |||||||||| |||||||| Sbjct: 494 gggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccag 553 Query: 313 ctcgacaaggccagaaagaagaaggccctaaggggcatcaagatcatgaagggtgacgcc 372 ||||| |||||| | ||||| ||||||| | |||| ||| |||||| |||| |||||| Sbjct: 554 ctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgcc 613 Query: 373 gaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctggcagcattgag 432 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 614 gaggacctccccttccccaccgacaccttcgaccgctacgtctccgccggcagcatcgag 673 Query: 433 tattggcctgatc 445 |||||||| |||| Sbjct: 674 tattggcccgatc 686
>dbj|AK104295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-008-F10, full insert sequence Length = 1311 Score = 232 bits (117), Expect = 8e-58 Identities = 309/373 (82%) Strand = Plus / Plus Query: 73 atccagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccat 132 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||||| Sbjct: 324 atccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccac 383 Query: 133 gtcttcaaccccggccagtacactgaggacatgcgcgacatctccctggagcatgcccgc 192 ||| ||||||| ||||| | || ||||||||||| ||| | |||| |||| ||| | Sbjct: 384 gtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgac 443 Query: 193 ctccatagccgggccctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctc 252 ||| | ||||| |||| ||| ||||| |||||||| || || ||||||||||||||| Sbjct: 444 ctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctc 503 Query: 253 ggcgtcgtccggcacgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaa 312 || ||||| || ||| || || |||||||| |||||| |||||||||| |||||||| Sbjct: 504 gggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccag 563 Query: 313 ctcgacaaggccagaaagaagaaggccctaaggggcatcaagatcatgaagggtgacgcc 372 ||||| |||||| | ||||| ||||||| | |||| ||| |||||| |||| |||||| Sbjct: 564 ctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgcc 623 Query: 373 gaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctggcagcattgag 432 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 624 gaggacctccccttccccaccgacaccttcgaccgctacgtctccgccggcagcatcgag 683 Query: 433 tattggcctgatc 445 |||||||| |||| Sbjct: 684 tattggcccgatc 696
>dbj|AK103998.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C05, full insert sequence Length = 1366 Score = 232 bits (117), Expect = 8e-58 Identities = 309/373 (82%) Strand = Plus / Plus Query: 73 atccagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccat 132 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||||| Sbjct: 327 atccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccac 386 Query: 133 gtcttcaaccccggccagtacactgaggacatgcgcgacatctccctggagcatgcccgc 192 ||| ||||||| ||||| | || ||||||||||| ||| | |||| |||| ||| | Sbjct: 387 gtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgac 446 Query: 193 ctccatagccgggccctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctc 252 ||| | ||||| |||| ||| ||||| |||||||| || || ||||||||||||||| Sbjct: 447 ctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctc 506 Query: 253 ggcgtcgtccggcacgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaa 312 || ||||| || ||| || || |||||||| |||||| |||||||||| |||||||| Sbjct: 507 gggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccag 566 Query: 313 ctcgacaaggccagaaagaagaaggccctaaggggcatcaagatcatgaagggtgacgcc 372 ||||| |||||| | ||||| ||||||| | |||| ||| |||||| |||| |||||| Sbjct: 567 ctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgcc 626 Query: 373 gaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctggcagcattgag 432 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 627 gaggacctccccttccccaccgacaccttcgaccgctacgtctccgccggcagcatcgag 686 Query: 433 tattggcctgatc 445 |||||||| |||| Sbjct: 687 tattggcccgatc 699
>dbj|AK072988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150A08, full insert sequence Length = 1359 Score = 232 bits (117), Expect = 8e-58 Identities = 309/373 (82%) Strand = Plus / Plus Query: 73 atccagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccat 132 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||||| Sbjct: 322 atccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccac 381 Query: 133 gtcttcaaccccggccagtacactgaggacatgcgcgacatctccctggagcatgcccgc 192 ||| ||||||| ||||| | || ||||||||||| ||| | |||| |||| ||| | Sbjct: 382 gtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgac 441 Query: 193 ctccatagccgggccctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctc 252 ||| | ||||| |||| ||| ||||| |||||||| || || ||||||||||||||| Sbjct: 442 ctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctc 501 Query: 253 ggcgtcgtccggcacgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaa 312 || ||||| || ||| || || |||||||| |||||| |||||||||| |||||||| Sbjct: 502 gggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccag 561 Query: 313 ctcgacaaggccagaaagaagaaggccctaaggggcatcaagatcatgaagggtgacgcc 372 ||||| |||||| | ||||| ||||||| | |||| ||| |||||| |||| |||||| Sbjct: 562 ctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgcc 621 Query: 373 gaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctggcagcattgag 432 |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct: 622 gaggacctccccttccccaccgacaccttcgaccgctacgtctccgccggcagcatcgag 681 Query: 433 tattggcctgatc 445 |||||||| |||| Sbjct: 682 tattggcccgatc 694
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 208 bits (105), Expect = 1e-50 Identities = 291/353 (82%) Strand = Plus / Minus Query: 73 atccagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccat 132 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||||| Sbjct: 26136773 atccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccac 26136714 Query: 133 gtcttcaaccccggccagtacactgaggacatgcgcgacatctccctggagcatgcccgc 192 ||| ||||||| ||||| | || ||||||||||| ||| | |||| |||| ||| | Sbjct: 26136713 gtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgac 26136654 Query: 193 ctccatagccgggccctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctc 252 ||| | ||||| |||| ||| ||||| |||||||| || || ||||||||||||||| Sbjct: 26136653 ctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctc 26136594 Query: 253 ggcgtcgtccggcacgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaa 312 || ||||| || ||| || || |||||||| |||||| |||||||||| |||||||| Sbjct: 26136593 gggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccag 26136534 Query: 313 ctcgacaaggccagaaagaagaaggccctaaggggcatcaagatcatgaagggtgacgcc 372 ||||| |||||| | ||||| ||||||| | |||| ||| |||||| |||| |||||| Sbjct: 26136533 ctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgcc 26136474 Query: 373 gaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctggcag 425 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 26136473 gaggacctccccttccccaccgacaccttcgaccgctacgtctccgccggcag 26136421
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 208 bits (105), Expect = 1e-50 Identities = 291/353 (82%) Strand = Plus / Minus Query: 73 atccagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccat 132 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||||| Sbjct: 26064949 atccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccac 26064890 Query: 133 gtcttcaaccccggccagtacactgaggacatgcgcgacatctccctggagcatgcccgc 192 ||| ||||||| ||||| | || ||||||||||| ||| | |||| |||| ||| | Sbjct: 26064889 gtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgac 26064830 Query: 193 ctccatagccgggccctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctc 252 ||| | ||||| |||| ||| ||||| |||||||| || || ||||||||||||||| Sbjct: 26064829 ctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctc 26064770 Query: 253 ggcgtcgtccggcacgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaa 312 || ||||| || ||| || || |||||||| |||||| |||||||||| |||||||| Sbjct: 26064769 gggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccag 26064710 Query: 313 ctcgacaaggccagaaagaagaaggccctaaggggcatcaagatcatgaagggtgacgcc 372 ||||| |||||| | ||||| ||||||| | |||| ||| |||||| |||| |||||| Sbjct: 26064709 ctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgcc 26064650 Query: 373 gaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctggcag 425 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 26064649 gaggacctccccttccccaccgacaccttcgaccgctacgtctccgccggcag 26064597
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144241 Score = 208 bits (105), Expect = 1e-50 Identities = 291/353 (82%) Strand = Plus / Minus Query: 73 atccagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccat 132 ||||||||||| |||||||| ||||||||||| ||||| ||||| ||| ||||||||| Sbjct: 27011 atccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccac 26952 Query: 133 gtcttcaaccccggccagtacactgaggacatgcgcgacatctccctggagcatgcccgc 192 ||| ||||||| ||||| | || ||||||||||| ||| | |||| |||| ||| | Sbjct: 26951 gtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgac 26892 Query: 193 ctccatagccgggccctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctc 252 ||| | ||||| |||| ||| ||||| |||||||| || || ||||||||||||||| Sbjct: 26891 ctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctc 26832 Query: 253 ggcgtcgtccggcacgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaa 312 || ||||| || ||| || || |||||||| |||||| |||||||||| |||||||| Sbjct: 26831 gggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccag 26772 Query: 313 ctcgacaaggccagaaagaagaaggccctaaggggcatcaagatcatgaagggtgacgcc 372 ||||| |||||| | ||||| ||||||| | |||| ||| |||||| |||| |||||| Sbjct: 26771 ctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgcc 26712 Query: 373 gaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctggcag 425 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 26711 gaggacctccccttccccaccgacaccttcgaccgctacgtctccgccggcag 26659
>gb|AY104466.1| Zea mays PCO114350 mRNA sequence Length = 1005 Score = 186 bits (94), Expect = 4e-44 Identities = 199/234 (85%) Strand = Plus / Plus Query: 207 cctcaaggtggtcgatgtcggcggtggcactgggttcaccacgctcggcgtcgtccggca 266 ||||| ||| ||||| |||||||| ||||| |||||||||||||||||| ||||| ||| Sbjct: 100 cctcacggtcgtcgacgtcggcggcggcacggggttcaccacgctcggcatcgtcaagca 159 Query: 267 cgttgatcccgagaacgtgacgctgatcgaccagtcgccgcaccaactcgacaaggccag 326 ||| | || |||||||| |||||| |||||||||| |||||||| |||||||||||| | Sbjct: 160 cgtcaacccggagaacgtcacgctgctcgaccagtccccgcaccagctcgacaaggcccg 219 Query: 327 aaagaagaaggccctaaggggcatcaagatcatgaagggtgacgccgaggaccttccctt 386 ||||| ||||||| | ||| ||| |||||| |||| |||||||||||||| || || Sbjct: 220 gcagaaggaggccctcaagggggtcaccatcatggagggcgacgccgaggacctcccgtt 279 Query: 387 ccccaccgacaccttcgaccgatacgtctccgctggcagcattgagtattggcc 440 |||||||||| |||||||||||||| ||||||| |||||||| ||||| ||||| Sbjct: 280 ccccaccgactccttcgaccgatacatctccgccggcagcatcgagtactggcc 333
>gb|AY333781.1| Chlamydomonas reinhardtii MPBQ/MSBQ methyltransferase (VTE3) mRNA, complete cds; nuclear gene for chloroplast product Length = 1014 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 362 agggtgacgccgaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctg 421 |||| |||||||||||||| |||||||||||||||||||| ||||| ||||| ||||| | Sbjct: 485 agggcgacgccgaggacctgcccttccccaccgacacctttgaccgctacgtgtccgccg 544 Query: 422 gcagcattgagtattggcc 440 || ||| ||||| ||||| Sbjct: 545 gctccatcgagtactggcc 563 Score = 58.0 bits (29), Expect = 3e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 277 gagaacgtgacgctgatcgaccagtcgccgcaccaactcgacaaggcca 325 ||||||||||||||||| |||||||| |||||||| || | |||||||| Sbjct: 400 gagaacgtgacgctgatggaccagtcaccgcaccagctggccaaggcca 448
>ref|XM_476850.1| Oryza sativa (japonica cultivar-group), mRNA Length = 993 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Plus Query: 362 agggtgacgccgaggaccttcccttccccaccgacaccttcgaccgatacgtctccgctg 421 |||||||||| |||||||| |||| ||| || ||||| || || || || ||||| |||| Sbjct: 467 agggtgacgctgaggacctcccctacccgactgacacatttgatcgctatgtctctgctg 526 Query: 422 gcagcattgagtattggcctgatc 445 | ||||||||||| |||||||||| Sbjct: 527 ggagcattgagtactggcctgatc 550 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 208 ctcaaggtggtcgatgtcggcggtggcactgggttcaccac 248 |||||||| |||||||| || |||||||||||||||||||| Sbjct: 313 ctcaaggttgtcgatgttggtggtggcactgggttcaccac 353
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 208 ctcaaggtggtcgatgtcggcggtggcactgggttcaccac 248 |||||||| |||||||| || |||||||||||||||||||| Sbjct: 4215888 ctcaaggttgtcgatgttggtggtggcactgggttcaccac 4215848
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 208 ctcaaggtggtcgatgtcggcggtggcactgggttcaccac 248 |||||||| |||||||| || |||||||||||||||||||| Sbjct: 99510 ctcaaggttgtcgatgttggtggtggcactgggttcaccac 99470
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1014_E09 Length = 184624 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 208 ctcaaggtggtcgatgtcggcggtggcactgggttcaccac 248 |||||||| |||||||| || |||||||||||||||||||| Sbjct: 36942 ctcaaggttgtcgatgttggtggtggcactgggttcaccac 36902
>emb|X74814.1|EGOMTRN E.gunnii OMT mRNA for O-Methyltransferase Length = 1452 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 213 ggtggtcgatgtcggcggtggcactggg 240 ||||||||||||||| |||||||||||| Sbjct: 692 ggtggtcgatgtcggaggtggcactggg 719
>gb|AF168777.1|AF168777 Eucalyptus globulus caffeic acid O-methyltransferase (COMT2) gene, partial cds Length = 3022 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 213 ggtggtcgatgtcggcggtggcactggg 240 ||||||||||||||| |||||||||||| Sbjct: 2291 ggtggtcgatgtcgggggtggcactggg 2318
>emb|AL021921.1|HS357I16 Human DNA sequence from clone RP3-357I16 on chromosome 1p36.13, complete sequence Length = 134506 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 378 ccttcccttccccaccgacacc 399 |||||||||||||||||||||| Sbjct: 117988 ccttcccttccccaccgacacc 117967
>gb|U95738.1|HSU95738 Human chromosome 16p13.11 BAC clone CIT987SK-29B12 complete sequence Length = 171368 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 378 ccttcccttccccaccgacacc 399 |||||||||||||||||||||| Sbjct: 27985 ccttcccttccccaccgacacc 28006
>ref|NM_116206.2| Arabidopsis thaliana APG1 (ALBINO OR PALE GREEN MUTANT 1); methyltransferase AT3G63410 (APG1) mRNA, complete cds Length = 1734 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 318 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 377 Query: 136 ttcaa 140 |||| Sbjct: 378 atcaa 382 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 456 gtggtcgatgtcggcggcggaactggtttcac 487
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 271 gatcccgagaacgtgacgctg 291 ||||||||||||||||||||| Sbjct: 2425266 gatcccgagaacgtgacgctg 2425286
>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project) Length = 79153 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 39101 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 39042 Query: 136 ttcaa 140 |||| Sbjct: 39041 atcaa 39037 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 38963 gtggtcgatgtcggcggcggaactggtttcac 38932
>emb|BX823184.1|CNS0A772 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB95ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1231 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 299 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 358 Query: 136 ttcaa 140 |||| Sbjct: 359 atcaa 363 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 437 gtggtcgatgtcggcggcggaactggtttcac 468
>emb|BX823122.1|CNS0A7AV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB91ZE01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1212 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 283 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 342 Query: 136 ttcaa 140 |||| Sbjct: 343 atcaa 347 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 421 gtggtcgatgtcggcggcggaactggtttcac 452
>emb|BX822388.1|CNS0A78A Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB33ZB11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1171 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 200 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 259 Query: 136 ttcaa 140 |||| Sbjct: 260 atcaa 264 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 338 gtggtcgatgtcggcggcggaactggtttcac 369
>emb|BX822319.1|CNS0A73F Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB28ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1210 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 274 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 333 Query: 136 ttcaa 140 |||| Sbjct: 334 atcaa 338 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 412 gtggtcgatgtcggcggcggaactggtttcac 443
>emb|BX825577.1|CNS0A6FE Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL45ZG06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1139 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 203 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 262 Query: 136 ttcaa 140 |||| Sbjct: 263 atcaa 267 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 341 gtggtcgatgtcggcggcggaactggtttcac 372
>emb|BX823904.1|CNS0A6LO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS90ZE02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1215 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 249 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 308 Query: 136 ttcaa 140 |||| Sbjct: 309 atcaa 313 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 387 gtggtcgatgtcggcggcggaactggtttcac 418
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 242 tcaccacgctcggcgtcgtcc 262 ||||||||||||||||||||| Sbjct: 5617212 tcaccacgctcggcgtcgtcc 5617192 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 gtggtcgatgtcggcggtggc 234 ||||||||||||||||||||| Sbjct: 2907823 gtggtcgatgtcggcggtggc 2907803
>gb|AY085864.1| Arabidopsis thaliana clone 19143 mRNA, complete sequence Length = 1169 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 284 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 343 Query: 136 ttcaa 140 |||| Sbjct: 344 atcaa 348 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 422 gtggtcgatgtcggcggcggaactggtttcac 453
>dbj|AB054257.1| Arabidopsis thaliana mRNA for APG1, complete cds Length = 1017 Score = 42.1 bits (21), Expect = 1.5 Identities = 54/65 (83%) Strand = Plus / Plus Query: 76 cagcacaaaaaggaggccctctggttctacagcttcatctccttcggctacgaccatgtc 135 |||||||| |||||||| |||||||||||| ||| | ||| ||| |||||||||||| Sbjct: 202 cagcacaagaaggaggcttactggttctacaggttcttatccatcgtatacgaccatgtc 261 Query: 136 ttcaa 140 |||| Sbjct: 262 atcaa 266 Score = 40.1 bits (20), Expect = 6.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggcactgggttcac 245 ||||||||||||||||| || ||||| ||||| Sbjct: 340 gtggtcgatgtcggcggcggaactggtttcac 371
>dbj|AB070947.1| Streptomyces avermitilis polyketide-9 biosynthetic gene cluster Length = 24268 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 214 gtggtcgatgtcggcggtggc 234 ||||||||||||||||||||| Sbjct: 10046 gtggtcgatgtcggcggtggc 10066
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tggtcgatgtcggcggtggc 234 |||||||||||||||||||| Sbjct: 6196172 tggtcgatgtcggcggtggc 6196191
>gb|BT014152.1| Lycopersicon esculentum clone 133271F, mRNA sequence Length = 1488 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 418 gctggcagcattgagtattggcctgatc 445 ||||| ||||||||||||||||| |||| Sbjct: 753 gctggaagcattgagtattggccagatc 780
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 ccgagaacgtgacgctgatc 294 |||||||||||||||||||| Sbjct: 3204718 ccgagaacgtgacgctgatc 3204699
>emb|BX294142.1| Pirellula sp. strain 1 complete genome; segment 10/24 Length = 294050 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 213 ggtggtcgatgtcggcggtggcac 236 |||||||||||||||||| ||||| Sbjct: 271033 ggtggtcgatgtcggcggcggcac 271056
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 caaggtggtcgatgtcggcg 229 |||||||||||||||||||| Sbjct: 448700 caaggtggtcgatgtcggcg 448719
>gb|AE004716.1| Pseudomonas aeruginosa PAO1, section 277 of 529 of the complete genome Length = 11610 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 248 cgctcggcgtcgtccggcacgttg 271 ||||||||||||||| |||||||| Sbjct: 694 cgctcggcgtcgtccagcacgttg 717
>gb|AC020611.15| Homo sapiens 12 BAC RP11-1029F8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188972 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aggaccttcccttccccacc 393 |||||||||||||||||||| Sbjct: 89331 aggaccttcccttccccacc 89312
>emb|X94968.1|NTENVMEMP N.tabacum mRNA for 37kDa chloroplast inner envelope membrane polypeptide Length = 1355 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 418 gctggcagcattgagtattggcctgatc 445 ||||| ||||||||||||||||| |||| Sbjct: 647 gctggaagcattgagtattggcccgatc 674
>gb|AF168776.1|AF168776 Eucalyptus globulus caffeic acid O-methyltransferase (COMT1) gene, partial cds Length = 1532 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 213 ggtggtcgatgtcggcggtggcactggg 240 ||||||||||||||| || ||||||||| Sbjct: 803 ggtggtcgatgtcggaggcggcactggg 830
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 gctcggcgtcgtccggcacg 268 |||||||||||||||||||| Sbjct: 2832775 gctcggcgtcgtccggcacg 2832756
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ttcgccatgggttccagcaa 59 |||||||||||||||||||| Sbjct: 347032 ttcgccatgggttccagcaa 347051 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,006,680 Number of Sequences: 3902068 Number of extensions: 3006680 Number of successful extensions: 52470 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51971 Number of HSP's gapped (non-prelim): 499 length of query: 445 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 423 effective length of database: 17,147,199,772 effective search space: 7253265503556 effective search space used: 7253265503556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
