>RCOR2_BRARE (Q6P116) REST corepressor 2|
          Length = 536

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +2

Query: 14  PTGVKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRP 124
           P    PPL   APPS PPS +  PP L+TR  +   P
Sbjct: 449 PLTQPPPLLRPAPPSAPPSLLRQPPPLQTRPLQNRTP 485

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 32.3 bits (72), Expect = 0.61
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 28  AAASCRRAPLATSILHPRPPSSPYQDLARISPAP 129
           AAA+    P A+ + +PRP +S Y   A  SPAP
Sbjct: 341 AAAASAAGPAASPVENPRPQASAYSPAAAASPAP 374

>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)|
          Length = 228

 Score = 32.0 bits (71), Expect = 0.79
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = +2

Query: 14  PTGVKPPLRVDAPPS----RPPSSILAPPRLRTRTSRASRP 124
           P    PP+ V   PS    RPP++ ++PPR R R  R+ RP
Sbjct: 128 PPRAVPPVGVRYHPSIEVARPPAARISPPRRRRRRRRSPRP 168

>CWC22_ASPFU (Q4WKB9) Pre-mRNA-splicing factor cwc22|
          Length = 881

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 22/50 (44%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 5   GRKPTGVK--PPLRVDAPP--SRPPSSILAPPRLRTRTSRASRPPLRSLA 142
           GR+ + V   PP RV      SR PS  + PPR RT  SR  R   RSL+
Sbjct: 727 GRRRSSVSRTPPRRVRGKSYDSRSPSRSVTPPRRRTSYSRRDRSYSRSLS 776

>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
           (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
 Frame = +2

Query: 20  GVKPPLRVDAPPSRPPSSILA-----PPRLRTRTSRASRPPLR 133
           GV  P    +P SRPPS   +     PPR  T T   SRPP R
Sbjct: 548 GVPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSR 590

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 38  RVDAPPSRPPSSILAPPRLRTRTSRASRPPLR 133
           R  +PP +PP    +PPR   R S ++ PP R
Sbjct: 364 RSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 395



 Score = 30.0 bits (66), Expect = 3.0
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 26  KPPLRVDAPP--SRPPSSILAPPRLRTRTSRASRPP 127
           KPP R  +PP  +R  S   +PPR R R S  + PP
Sbjct: 371 KPPKRTSSPPRKTRRLSPSASPPRRRHRPSSPATPP 406

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 38  RVDAPPSRPPSSILAPPRLRTRTSRASRPPLR 133
           R  +PP +PP    +PPR   R S ++ PP R
Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 26  KPPLRVDAPP--SRPPSSILAPPRLRTRTSRASRPP 127
           KPP R  +PP  +R  S   +PPR R R S  + PP
Sbjct: 373 KPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPP 408

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 38  RVDAPPSRPPSSILAPPRLRTRTSRASRPPLR 133
           R  +PP +PP    +PPR   R S ++ PP R
Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLSPSASPPRR 397



 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 26  KPPLRVDAPP--SRPPSSILAPPRLRTRTSRASRPP 127
           KPP R  +PP  +R  S   +PPR R R S  + PP
Sbjct: 373 KPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPP 408

>ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4 locus|
          Length = 679

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +2

Query: 2   GGRKPTGVKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRPP 127
           G R P G  P L    PPSRP  +   PP   T T     PP
Sbjct: 263 GPRVPIGPNPVLSDQRPPSRPVPARPPPPSNSTPTGDPLTPP 304

>SRPK1_HUMAN (Q96SB4) Serine/threonine-protein kinase SRPK1 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 1)
           (SR-protein-specific kinase 1) (SFRS protein kinase 1)
          Length = 826

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +2

Query: 2   GGRKPTGVKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRPP 127
           G R+P   +P  R + PP+ P  ++L  P   + T  AS  P
Sbjct: 95  GRRRPPPARPLTRPETPPAHPARALLCAPWAASPTPAASPSP 136

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 30/101 (29%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
 Frame = +2

Query: 5   GRKPTGVKP--PLRVDAPPSRPPSSILAP-PRLRTRTSRASRPPLRSLA*V*GSGGRFGP 175
           GR P+   P  P R   PP  PP S  AP PR   RT  A             S GR   
Sbjct: 221 GRGPSSAAPAAPGRTPPPPGPPPLSEAAPKPRAAARTPAA-------------SAGRIER 267

Query: 176 NWAAXXXXXXXXXXXDMTGKKRKAEAARLDETDRAMYGAFR 298
             A               G+ R+ E    D T  A Y  +R
Sbjct: 268 RRARAAVAGRDATGRFTAGQPRRVE-LDADATSGAFYARYR 307

>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 11   KPTGVKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRPPL 130
            +P     P  VD PPSRP +   +P  +R     +S PP+
Sbjct: 3275 RPVETPTPDVVDGPPSRPTTPPASPQPIRATVEVSSPPPV 3314

>FBRL_DROER (Q8I1F4) Fibrillarin|
          Length = 345

 Score = 24.3 bits (51), Expect(2) = 3.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 90  RGGARMEDGGREGGASTRSGGFT 22
           RGG     GGR GGA    GG T
Sbjct: 89  RGGGGRGGGGRGGGAGGFKGGKT 111



 Score = 24.3 bits (51), Expect(2) = 3.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 131 GGAGEMRARSWYGDEGGRG 75
           GG G  R R   GD GGRG
Sbjct: 35  GGFGGGRGRGGGGDRGGRG 53

>FBRL_DROME (Q9W1V3) Fibrillarin|
          Length = 344

 Score = 24.3 bits (51), Expect(2) = 3.2
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 90  RGGARMEDGGREGGASTRSGGFT 22
           RGG     GGR GGA    GG T
Sbjct: 88  RGGGGRGGGGRGGGAGGFKGGKT 110



 Score = 24.3 bits (51), Expect(2) = 3.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 131 GGAGEMRARSWYGDEGGRG 75
           GG G  R R   GD GGRG
Sbjct: 34  GGFGGGRGRGGGGDRGGRG 52

>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)|
          Length = 701

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
 Frame = +1

Query: 1   GREETYRRKAAASCRRAPLATSILHPRPPSSPYQDLARISPAP-------PLTRLGLGFR 159
           G  +   R+   S  RAP     L P PP  P +  +R SPA        P +   +   
Sbjct: 600 GTPQALPRRLVGSSLRAPTVPPPLPPTPP-QPARRQSRRSPASPSPASPGPASPSPVSLS 658

Query: 160 RPIRAELGRAAADQGS 207
            P + +LG A A+ G+
Sbjct: 659 NPAQVDLGAATAEGGA 674

>COS10_YEAST (P52924) Protein COS10|
          Length = 374

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 7   EETYRRKAAASCRRAPLATSILHPRPPSSPYQDLARISPA 126
           +ETYR K A SC+R  ++ S L   P  S +   A +SPA
Sbjct: 213 KETYRCKLAWSCQRIRISFSPLDFLPDMSDFFICANLSPA 252

>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 52  PLATSILHPRPPSSPYQDLARISPAPPLTRLGLGFRRPIRAELGRAA 192
           P   S+ HP PP+ P       + +PP T       RPI A + R A
Sbjct: 119 PSTESVAHPAPPTRPANPTPTPTSSPPKTA-----ARPINAPISRPA 160

>FMR1_MOUSE (P35922) Fragile X mental retardation protein 1 homolog (Protein|
           FMR-1) (FMRP)
          Length = 614

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 117 DAREVLVRRRGGARMEDGGREGGASTRSGGF 25
           + RE  +RR  G R   GGR  G   R GGF
Sbjct: 519 EERESFLRRGDGRRRRGGGRGQGGRGRGGGF 549

>US04_HCMVA (P16839) Hypothetical protein US4|
          Length = 119

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 17  TGVKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRPP 127
           T V PPL   +PP+   ++   P R     S  SRPP
Sbjct: 43  TAVSPPLTFSSPPTSTVATPYFPMRFINVKSHVSRPP 79

>IRX5_HUMAN (P78411) Iroquois-class homeodomain protein IRX-5 (Iroquois|
           homeobox protein 5) (Homeodomain protein IRXB2) (IRX-2A)
          Length = 482

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 5   GRKPTGVKPPLRVDAPPSRPPSSILAPPRL 94
           G  P G   P  + +PP  PP ++LA P+L
Sbjct: 304 GEVPPGPGGPSVIHSPPPPPPPAVLAKPKL 333

>ABCD4_MOUSE (O89016) ATP-binding cassette sub-family D member 4 (Peroxisomal|
           membrane protein 69) (PMP69) (Peroxisomal membrane
           protein 1-like) (PXMP1-L) (P70R)
          Length = 606

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 317 SQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENG 427
           S+LY +           G R ++EK + W+LR H  G
Sbjct: 560 SELYRIGQQLGMTFISVGHRPSLEKFHSWVLRLHGGG 596

>GFC1_HUMAN (P63117) HERV-F(c)1_Xq21.33 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein]
          Length = 469

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 2   GGRKPTGVKPPLRVDAP--PSRPPSSILAPPRLRTRTSRASRPPLRSLA*V*GSGG 163
           G   PT   PPL    P  P+ PP+S L PP   +  +R+    L  L  V G+ G
Sbjct: 143 GSSGPTPTAPPLPPTPPSSPANPPASALPPPSPVSAHTRSKTDLLCLLREVAGAEG 198

>BUR1_YARLI (Q6C842) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 706

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = +2

Query: 29  PPLRVDAPPSRPPSSILAPPRLRTRTSRASRPPLR 133
           PPL  D PP  P S+   PPR  + T   SRPP R
Sbjct: 630 PPLPADGPPPPPSSN---PPR-PSETYGGSRPPWR 660

>MMP21_HUMAN (Q8N119) Matrix metalloproteinase-21 precursor (EC 3.4.24.-)|
           (MMP-21)
          Length = 569

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 23  VKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRPPL 130
           ++PP     PPS PPS    PPR R+R  R+ R PL
Sbjct: 122 MRPP-----PPSAPPSPPGPPPRARSR--RSPRAPL 150

>ZCHC8_XENLA (Q6DD45) Zinc finger CCHC domain-containing protein 8|
          Length = 743

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 5   GRKPTGVKPPLRVDAPPSRPPSSILAPP 88
           G    G  PPL    PPS PP+ I  PP
Sbjct: 460 GSPSYGTPPPLPRGTPPSTPPNFIPPPP 487

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 38  RVDAPPSRPPS-SILAPPRLRTRTSRASRPPLR 133
           R  +PP +PP  ++ +PPR   R S ++ PP R
Sbjct: 362 RSRSPPKKPPKRTVSSPPRKTRRLSPSASPPRR 394

>SYN2_HUMAN (Q92777) Synapsin-2 (Synapsin II)|
          Length = 582

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 2   GGRKPTGVKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRPPLR 133
           G  +P G++PP +V  PP R P     PP   + +S +S  P R
Sbjct: 458 GPGQPQGMQPPGKV-LPPRRLPPGPSLPPSSSSSSSSSSSAPQR 500

>AVEN_MOUSE (Q9D9K3) Cell death regulator Aven|
          Length = 342

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 20/36 (55%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = -1

Query: 126 GGRDAREVLVRR-RGGA-----RMEDGGREGGASTR 37
           GGR  R    RR RGG      R E GGR GGASTR
Sbjct: 42  GGRRGRGRGFRRGRGGGGLRGGRWEPGGRGGGASTR 77

>PRP1_HUMAN (P04280) Basic salivary proline-rich protein 1 precursor (Salivary|
           proline-rich protein) [Contains: Basic peptide IB-6;
           Peptide P-H]
          Length = 392

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
 Frame = +2

Query: 2   GGRKPTGVKPPLRVDAPPSR----------PPSSILAPPRLRTRTSRASRPP 127
           GG KP G  PP +   PP++          PP     PP+      +   PP
Sbjct: 308 GGNKPQGPPPPGKPQGPPAQGGSKSQSARAPPGKPQGPPQQEGNNPQGPPPP 359

>KLF2_HUMAN (Q9Y5W3) Krueppel-like factor 2 (Lung krueppel-like factor)|
          Length = 355

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 18/40 (45%), Positives = 18/40 (45%)
 Frame = +2

Query: 8   RKPTGVKPPLRVDAPPSRPPSSILAPPRLRTRTSRASRPP 127
           R P G  PP     PP  PP S   P RL     RAS PP
Sbjct: 161 RGPGGRPPP-----PPDTPPLSPDGPARLPAPGPRASFPP 195

>FMR1_HUMAN (Q06787) Fragile X mental retardation 1 protein (Protein FMR-1)|
           (FMRP)
          Length = 632

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -1

Query: 117 DAREVLVRRRGGARMEDGGREGGASTRSGGF 25
           + RE  +RR  G R   GGR  G   R GGF
Sbjct: 520 EERESFLRRGDGRRRGGGGRGQGGRGRGGGF 550


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,341,752
Number of Sequences: 219361
Number of extensions: 793515
Number of successful extensions: 5241
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 4121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5156
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)