ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet90c05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY596579.1| Saccharum officinarum clone SCCCCL4004C06, comple... 115 4e-23
2ref|XM_550499.1| Oryza sativa (japonica cultivar-group), mRNA 111 6e-22
3ref|NM_185418.2| Oryza sativa (japonica cultivar-group), mRNA 111 6e-22
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 111 6e-22
5dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic D... 111 6e-22
6dbj|AK120464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 6e-22
7dbj|AK100531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 6e-22
8dbj|AK067430.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 6e-22
9dbj|AK061817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 6e-22
10dbj|AK102259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 1e-19
11dbj|AK102765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 9e-18
12gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 0.47
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.47
14dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.47
15dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.47
16dbj|AK120141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.47
17dbj|AK073914.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.47
18ref|XM_864090.1| PREDICTED: Bos taurus similar to forkhead box I... 40 1.9
19emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on ch... 40 1.9
20gb|AY956334.1| Streptomyces aureofaciens strain CCM3239 auricin ... 40 1.9
21ref|XM_236056.3| PREDICTED: Rattus norvegicus roundabout homolog... 40 1.9
22dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 1.9
23gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 38 7.3
24ref|XM_470402.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.3
25ref|XM_478400.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.3
26gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.3
27gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 38 7.3
28gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 38 7.3
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.3
30gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 38 7.3
31emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 38 7.3
32emb|Z83838.2|HS127B20 Human DNA sequence from clone RP1-127B20 o... 38 7.3
33emb|AL513284.12| Human DNA sequence from clone RP11-518D3 on chr... 38 7.3
34gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 38 7.3
35emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome... 38 7.3
36emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 38 7.3
37gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 7.3
38gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 38 7.3
39gb|AF449411.1| Myxococcus xanthus cosmid pREG3E1, complete sequence 38 7.3
40gb|AC159809.2| Mus musculus BAC clone RP24-216P6 from chromosome... 38 7.3
41gb|AF076485.2|AF076485 Myxococcus xanthus defective in fruiting ... 38 7.3
42gb|AC117816.11| Mus musculus chromosome 19, clone RP24-573C13, c... 38 7.3
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
44dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
45dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
46dbj|AB210738.1| Ciona intestinalis Ci-UHRF2 mRNA, complete cds, ... 38 7.3
47gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genom... 38 7.3
48dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 38 7.3
49ref|XM_213624.3| PREDICTED: Rattus norvegicus Mak3 homolog (S. c... 38 7.3
50dbj|AK174562.1| Ciona intestinalis cDNA, clone:cieg085e20, full ... 38 7.3
51dbj|AK174341.1| Ciona intestinalis cDNA, clone:cicl045c20, full ... 38 7.3
52dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic D... 38 7.3
53dbj|AB006038.1| Cyprinus carpio cERK1 mRNA for extracellular sig... 38 7.3
54emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on ch... 38 7.3
55ref|XM_307077.2| Anopheles gambiae str. PEST ENSANGP00000001370 ... 38 7.3
56dbj|AK073441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.3
57dbj|AP004502.1| Lotus japonicus genomic DNA, chromosome 1, clone... 38 7.3 
>gb|AY596579.1| Saccharum officinarum clone SCCCCL4004C06, complete sequence
          Length = 2285

 Score =  115 bits (58), Expect = 4e-23
 Identities = 97/110 (88%)
 Strand = Plus / Plus

                                                                       
Query: 42  gaggctgtgcacacccgcaacctcgggctgatgatccgtggtcttgctgctcacgactcg 101
           ||||| ||||| ||||||||||| || |||||||||||||| |||||||| || ||||| 
Sbjct: 888 gaggcagtgcatacccgcaaccttggtctgatgatccgtggccttgctgcgcatgactca 947

                                                             
Query: 102 ggcaaacaccttgtcctccgccgccgcgctgctgccagccagctcagcct 151
           ||||| |||||||| || |||||||| |||||||| ||||||||||||||
Sbjct: 948 ggcaagcaccttgttcttcgccgccgtgctgctgcgagccagctcagcct 997
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>ref|XM_550499.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1450

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
           |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 300 tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 359

                                                                       
Query: 64  tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
           | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 360 ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 419

                                   
Query: 124 gccgcgctgctgccagccagctca 147
           | || ||||||||||| |||||||
Sbjct: 420 gtcgtgctgctgccagtcagctca 443
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>ref|NM_185418.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2246

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                        
Query: 4    tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
            |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 930  tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 989

                                                                        
Query: 64   tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
            | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 990  ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 1049

                                    
Query: 124  gccgcgctgctgccagccagctca 147
            | || ||||||||||| |||||||
Sbjct: 1050 gtcgtgctgctgccagtcagctca 1073
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Minus

                                                                          
Query: 4      tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
              |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 796739 tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 796680

                                                                          
Query: 64     tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
              | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 796679 ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 796620

                                      
Query: 124    gccgcgctgctgccagccagctca 147
              | || ||||||||||| |||||||
Sbjct: 796619 gtcgtgctgctgccagtcagctca 796596
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>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0541H01
          Length = 157519

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Minus

                                                                         
Query: 4     tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
             |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 79873 tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 79814

                                                                         
Query: 64    tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
             | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 79813 ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 79754

                                     
Query: 124   gccgcgctgctgccagccagctca 147
             | || ||||||||||| |||||||
Sbjct: 79753 gtcgtgctgctgccagtcagctca 79730
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>dbj|AK120464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108C12, full
            insert sequence
          Length = 3983

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                        
Query: 4    tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
            |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 2574 tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 2633

                                                                        
Query: 64   tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
            | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 2634 ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 2693

                                    
Query: 124  gccgcgctgctgccagccagctca 147
            | || ||||||||||| |||||||
Sbjct: 2694 gtcgtgctgctgccagtcagctca 2717
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>dbj|AK100531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101I10, full
            insert sequence
          Length = 3630

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                        
Query: 4    tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
            |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 2221 tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 2280

                                                                        
Query: 64   tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
            | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 2281 ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 2340

                                    
Query: 124  gccgcgctgctgccagccagctca 147
            | || ||||||||||| |||||||
Sbjct: 2341 gtcgtgctgctgccagtcagctca 2364
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>dbj|AK067430.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B06, full
            insert sequence
          Length = 2245

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                        
Query: 4    tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
            |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 929  tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 988

                                                                        
Query: 64   tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
            | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 989  ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 1048

                                    
Query: 124  gccgcgctgctgccagccagctca 147
            | || ||||||||||| |||||||
Sbjct: 1049 gtcgtgctgctgccagtcagctca 1072
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>dbj|AK061817.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B07, full
           insert sequence
          Length = 1450

 Score =  111 bits (56), Expect = 6e-22
 Identities = 122/144 (84%)
 Strand = Plus / Plus

                                                                       
Query: 4   tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
           |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 300 tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 359

                                                                       
Query: 64  tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
           | || || ||||||||||| ||||| || || ||||| ||||| ||||||||||| ||||
Sbjct: 360 ttggactcatgatccgtggccttgcagcacatgactctggcaagcaccttgtccttcgcc 419

                                   
Query: 124 gccgcgctgctgccagccagctca 147
           | || ||||||||||| |||||||
Sbjct: 420 gtcgtgctgctgccagtcagctca 443
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>dbj|AK102259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033088K01, full
            insert sequence
          Length = 2430

 Score =  103 bits (52), Expect = 1e-19
 Identities = 121/144 (84%)
 Strand = Plus / Plus

                                                                        
Query: 4    tctacatcctcttcatcgctgcgtccatcatcattgctgaggctgtgcacacccgcaacc 63
            |||||||||| ||||| | ||| ||||||||  |||||||||||||||| || ||||| |
Sbjct: 1092 tctacatcctgttcattggtgcatccatcattgttgctgaggctgtgcatacacgcaatc 1151

                                                                        
Query: 64   tcgggctgatgatccgtggtcttgctgctcacgactcgggcaaacaccttgtcctccgcc 123
            | || || ||||||||||| ||||| || || ||||| ||||| ||| ||||||| ||||
Sbjct: 1152 ttggactcatgatccgtggccttgcagcacatgactctggcaagcactttgtccttcgcc 1211

                                    
Query: 124  gccgcgctgctgccagccagctca 147
            | || ||||||||||| |||||||
Sbjct: 1212 gtcgtgctgctgccagtcagctca 1235
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>dbj|AK102765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D23, full
           insert sequence
          Length = 1309

 Score = 97.6 bits (49), Expect = 9e-18
 Identities = 103/121 (85%)
 Strand = Plus / Plus

                                                                       
Query: 27  tccatcatcattgctgaggctgtgcacacccgcaacctcgggctgatgatccgtggtctt 86
           ||||||||  |||||||||||||||| || ||||| || || || ||||||||||| |||
Sbjct: 16  tccatcattgttgctgaggctgtgcatacacgcaatcttggactcatgatccgtggcctt 75

                                                                       
Query: 87  gctgctcacgactcgggcaaacaccttgtcctccgccgccgcgctgctgccagccagctc 146
           || || || ||||| ||||| ||||||||||| ||||| || ||||||||||| ||||||
Sbjct: 76  gcagcacatgactctggcaagcaccttgtccttcgccgtcgtgctgctgccagtcagctc 135

            
Query: 147 a 147
           |
Sbjct: 136 a 136
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 54      acccgcaacctcgggctgatg 74
               |||||||||||||||||||||
Sbjct: 2712908 acccgcaacctcgggctgatg 2712888
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 104      caaacaccttgtcctccgccgccgc 128
                |||||||||||||| ||||||||||
Sbjct: 27041961 caaacaccttgtccgccgccgccgc 27041937
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>dbj|AP004139.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1486_E07
          Length = 110494

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 104   caaacaccttgtcctccgccgccgc 128
             |||||||||||||| ||||||||||
Sbjct: 13610 caaacaccttgtccgccgccgccgc 13586
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>dbj|AP005108.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461B08
          Length = 153743

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 104   caaacaccttgtcctccgccgccgc 128
             |||||||||||||| ||||||||||
Sbjct: 95163 caaacaccttgtccgccgccgccgc 95139
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>dbj|AK120141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013028D07, full
            insert sequence
          Length = 2904

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 104  caaacaccttgtcctccgccgccgc 128
            |||||||||||||| ||||||||||
Sbjct: 2444 caaacaccttgtccgccgccgccgc 2468
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>dbj|AK073914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N24, full
            insert sequence
          Length = 3037

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 104  caaacaccttgtcctccgccgccgc 128
            |||||||||||||| ||||||||||
Sbjct: 2574 caaacaccttgtccgccgccgccgc 2598
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>ref|XM_864090.1| PREDICTED: Bos taurus similar to forkhead box I2 (LOC613373), mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 114 gtcctccgccgccgcgctgc 133
           ||||||||||||||||||||
Sbjct: 129 gtcctccgccgccgcgctgc 148
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>emb|AL136221.38| Human DNA sequence from clone RP11-391H12 on chromosome 13 Contains the
              CUL4A gene for cullin 4A, the LAMP1 gene for
              lysosomal-associated membrane protein 1, the GRTP1 gene for
              growth hormone regulated TBC protein 1, a novel gene, the
              5' end of a novel gene (FLJ11305) an LDHB (lactate
              dehydrogenase B) pseudogene and six CpG islands, complete
              sequence
          Length = 188896

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    gccgccgcgctgctgccagc 140
              ||||||||||||||||||||
Sbjct: 137528 gccgccgcgctgctgccagc 137509
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>gb|AY956334.1| Streptomyces aureofaciens strain CCM3239 auricin biosynthesis gene
            cluster, partial sequence
          Length = 17455

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  cctccgccgccgcgctgctg 135
            ||||||||||||||||||||
Sbjct: 4457 cctccgccgccgcgctgctg 4476
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>ref|XM_236056.3| PREDICTED: Rattus norvegicus roundabout homolog 3 (Drosophila)
            (predicted) (Robo3_predicted), mRNA
          Length = 5220

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  gccgcgctgctgccagccag 143
            ||||||||||||||||||||
Sbjct: 3758 gccgcgctgctgccagccag 3739
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     gccgccgcgctgctgccagc 140
               ||||||||||||||||||||
Sbjct: 2033940 gccgccgcgctgctgccagc 2033921
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 123     cgccgcgctgctgccagcc 141
               |||||||||||||||||||
Sbjct: 1274904 cgccgcgctgctgccagcc 1274886
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>ref|XM_470402.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2714

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 118 tccgccgccgcgctgctgc 136
           |||||||||||||||||||
Sbjct: 309 tccgccgccgcgctgctgc 327
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>ref|XM_478400.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1116

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 110 ccttgtcctccgccgccgc 128
           |||||||||||||||||||
Sbjct: 253 ccttgtcctccgccgccgc 235
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>gb|AC113332.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1057_B02,
             complete sequence
          Length = 99795

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 110   ccttgtcctccgccgccgc 128
             |||||||||||||||||||
Sbjct: 55372 ccttgtcctccgccgccgc 55354
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 109     accttgtcctccgccgccgcgctgctg 135
               ||||| ||||| |||||||||||||||
Sbjct: 3255802 accttctcctcggccgccgcgctgctg 3255828
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    tccgccgccgcgctgctgc 136
              |||||||||||||||||||
Sbjct: 912644 tccgccgccgcgctgctgc 912626
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 118      tccgccgccgcgctgctgc 136
                |||||||||||||||||||
Sbjct: 35253853 tccgccgccgcgctgctgc 35253835
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
              sequence
          Length = 156606

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    tccgccgccgcgctgctgc 136
              |||||||||||||||||||
Sbjct: 132614 tccgccgccgcgctgctgc 132596
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 119     ccgccgccgcgctgctgcc 137
               |||||||||||||||||||
Sbjct: 4997079 ccgccgccgcgctgctgcc 4997097
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>emb|Z83838.2|HS127B20 Human DNA sequence from clone RP1-127B20 on chromosome 22, complete
             sequence
          Length = 135259

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 132   gctgccagccagctcagcc 150
             |||||||||||||||||||
Sbjct: 48464 gctgccagccagctcagcc 48446
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>emb|AL513284.12| Human DNA sequence from clone RP11-518D3 on chromosome 1 Contains the
             3' end of a novel gene (FLJ42034, FLJ38762), the gene for
             a putative NFkB activating protein 373, a C-terminal
             binding protein 2 (CTBP2) pseudogene, a ribosomal protein
             S7 (RPS7) pseudogene and a CpG island, complete sequence
          Length = 169972

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 127   gcgctgctgccagccagct 145
             |||||||||||||||||||
Sbjct: 62322 gcgctgctgccagccagct 62340
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 56     ccgcaacctcgggctgatg 74
              |||||||||||||||||||
Sbjct: 862852 ccgcaacctcgggctgatg 862834
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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 109    accttgtcctccgccgccgcgctgctg 135
              ||||| ||||| |||||||||||||||
Sbjct: 142444 accttctcctcggccgccgcgctgctg 142470
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>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             11/14
          Length = 318050

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 109   accttgtcctccgccgccgcgctgctg 135
             ||||| ||||| |||||||||||||||
Sbjct: 93054 accttctcctcggccgccgcgctgctg 93080
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 118   tccgccgccgcgctgctgc 136
             |||||||||||||||||||
Sbjct: 79156 tccgccgccgcgctgctgc 79138
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 17      catcgctgcgtccatcatc 35
               |||||||||||||||||||
Sbjct: 4064942 catcgctgcgtccatcatc 4064960
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>gb|AF449411.1| Myxococcus xanthus cosmid pREG3E1, complete sequence
          Length = 36615

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 119   ccgccgccgcgctgctgcc 137
             |||||||||||||||||||
Sbjct: 18837 ccgccgccgcgctgctgcc 18819
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>gb|AC159809.2| Mus musculus BAC clone RP24-216P6 from chromosome 9, complete sequence
          Length = 160712

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 115   tcctccgccgccgcgctgctgcc 137
             |||||||||||| ||||||||||
Sbjct: 44542 tcctccgccgccccgctgctgcc 44564
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>gb|AF076485.2|AF076485 Myxococcus xanthus defective in fruiting (dif) locus, complete
           sequence
          Length = 5950

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 ccgccgccgcgctgctgcc 137
           |||||||||||||||||||
Sbjct: 550 ccgccgccgcgctgctgcc 568
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>gb|AC117816.11| Mus musculus chromosome 19, clone RP24-573C13, complete sequence
          Length = 168728

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 29     catcatcattgctgaggct 47
              |||||||||||||||||||
Sbjct: 124606 catcatcattgctgaggct 124624
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 110      ccttgtcctccgccgccgc 128
                |||||||||||||||||||
Sbjct: 19704579 ccttgtcctccgccgccgc 19704597
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 110      ccttgtcctccgccgccgc 128
                |||||||||||||||||||
Sbjct: 24452699 ccttgtcctccgccgccgc 24452681
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 118      tccgccgccgcgctgctgc 136
                |||||||||||||||||||
Sbjct: 35343925 tccgccgccgcgctgctgc 35343907
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>dbj|AB210738.1| Ciona intestinalis Ci-UHRF2 mRNA, complete cds, clone: cima846j16
          Length = 2788

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 29   catcatcattgctgaggct 47
            |||||||||||||||||||
Sbjct: 1944 catcatcattgctgaggct 1926
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>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete
              sequence
          Length = 116443

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 118    tccgccgccgcgctgctgc 136
              |||||||||||||||||||
Sbjct: 114601 tccgccgccgcgctgctgc 114619
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 123     cgccgcgctgctgccagcc 141
               |||||||||||||||||||
Sbjct: 8011842 cgccgcgctgctgccagcc 8011860
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>ref|XM_213624.3| PREDICTED: Rattus norvegicus Mak3 homolog (S. cerevisiae)
           (predicted) (Mak3_predicted), mRNA
          Length = 1107

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 119 ccgccgccgcgctgctgcc 137
           |||||||||||||||||||
Sbjct: 118 ccgccgccgcgctgctgcc 100
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>dbj|AK174562.1| Ciona intestinalis cDNA, clone:cieg085e20, full insert sequence
          Length = 1024

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 29  catcatcattgctgaggct 47
           |||||||||||||||||||
Sbjct: 122 catcatcattgctgaggct 104
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>dbj|AK174341.1| Ciona intestinalis cDNA, clone:cicl045c20, full insert sequence
          Length = 2736

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 29   catcatcattgctgaggct 47
            |||||||||||||||||||
Sbjct: 1873 catcatcattgctgaggct 1855
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>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0048D08
          Length = 145772

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 110   ccttgtcctccgccgccgc 128
             |||||||||||||||||||
Sbjct: 36585 ccttgtcctccgccgccgc 36603
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>dbj|AB006038.1| Cyprinus carpio cERK1 mRNA for extracellular signal regulated
           protein kinase 1, complete cds
          Length = 1539

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 119 ccgccgccgcgctgctgcc 137
           |||||||||||||||||||
Sbjct: 293 ccgccgccgcgctgctgcc 275
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>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete
              sequence
          Length = 219412

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     gggctgatgatccgtggtc 84
              |||||||||||||||||||
Sbjct: 156820 gggctgatgatccgtggtc 156838
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>ref|XM_307077.2| Anopheles gambiae str. PEST ENSANGP00000001370
           (ENSANGG00000001175), partial mRNA
          Length = 900

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 133 ctgccagccagctcagcct 151
           |||||||||||||||||||
Sbjct: 686 ctgccagccagctcagcct 704
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>dbj|AK073441.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E24, full
           insert sequence
          Length = 2716

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 118 tccgccgccgcgctgctgc 136
           |||||||||||||||||||
Sbjct: 311 tccgccgccgcgctgctgc 329
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>dbj|AP004502.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT07E11, TM0033b,
             complete sequence
          Length = 80917

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    attgctgaggctgtgcaca 54
             |||||||||||||||||||
Sbjct: 36397 attgctgaggctgtgcaca 36379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,320,199
Number of Sequences: 3902068
Number of extensions: 1320199
Number of successful extensions: 123159
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121444
Number of HSP's gapped (non-prelim): 1715
length of query: 152
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 131
effective length of database: 17,151,101,840
effective search space: 2246794341040
effective search space used: 2246794341040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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