ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet90c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483411.1| Oryza sativa (japonica cultivar-group), mRNA 180 3e-42
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 180 3e-42
3dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 180 3e-42
4dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic D... 180 3e-42
5dbj|AK058714.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
6gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
7gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome... 62 2e-06
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
9ref|XM_483413.1| Oryza sativa (japonica cultivar-group), mRNA 56 1e-04
10ref|XM_470580.1| Oryza sativa (japonica cultivar-group), predic... 44 0.38
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.38
12gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
13gb|AC121789.2| Mus musculus BAC clone RP23-398C14 from 1, comple... 44 0.38
14gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, co... 44 0.38
15gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, com... 44 0.38
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
17dbj|AK104413.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
18dbj|AK104041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
19dbj|AK070149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
20dbj|AK061389.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
21gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 42 1.5
22gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
23gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.5
24dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
25ref|XM_467867.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
26gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
27gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
28gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.0
29gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.0
30ref|XM_423471.1| PREDICTED: Gallus gallus similar to Protocadher... 40 6.0
31gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.0
32ref|XM_744580.1| Aspergillus fumigatus Af293 uridine kinase (Afu... 40 6.0
33emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chrom... 40 6.0
34emb|AL390958.15| Human DNA sequence from clone RP11-271D19 on ch... 40 6.0
35gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 6.0
36emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 6.0
37emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.0
38gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosom... 40 6.0
39dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
40gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
41dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
43gb|AC010900.12| Homo sapiens BAC clone RP11-544H14 from 2, compl... 40 6.0
44gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
45gb|AE004474.1| Pseudomonas aeruginosa PAO1, section 35 of 529 of... 40 6.0
46dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.0
47dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.0
48dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
49dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
50emb|AL844141.7| Zebrafish DNA sequence from clone DKEY-30K6, com... 40 6.0
51dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
52emb|X95407.1|RCDSTNORG R.capsulatus dimethyl sulfoxide/trimethyl... 40 6.0
53dbj|AK110174.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
54dbj|AK072397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
55dbj|AK060579.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
56gb|AY104997.1| Zea mays PCO079200 mRNA sequence 40 6.0
57gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.0
58gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
59emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.0
60emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, c... 40 6.0
61gb|L41887.1|HUMSFRS Homo sapiens splicing factor, arginine/serin... 40 6.0
62emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chro... 40 6.0
63gb|AY560757.1| Quamtana bonamanzi 28S ribosomal RNA gene, partia... 40 6.0
64gb|AF210311.1| Streptomyces verticillus phosphopantetheinyl tran... 40 6.0 
>ref|XM_483411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1418

 Score =  180 bits (91), Expect = 3e-42
 Identities = 183/213 (85%), Gaps = 3/213 (1%)
 Strand = Plus / Plus

                                                                       
Query: 226 gtgcacggcggagaggttctccaagaaccgcgtgtacgcggcctgcaccgacctgcctac 285
           |||| ||||||||||||||  ||  ||||||||||||||||| |||| |||||||||   
Sbjct: 140 gtgcgcggcggagaggttcagcagcaaccgcgtgtacgcggcgtgcagcgacctgcccca 199

                                                                       
Query: 286 cctgggcgcgtccgtgcactggacctacgacccggcggcgtcc---tccctctccgtggc 342
           ||||||||||||||||||||||||||||||| | ||||||||    || || ||||||||
Sbjct: 200 cctgggcgcgtccgtgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggc 259

                                                                       
Query: 343 cttcgtcgccgcgccgccctcggccggcggctgggtcgcctgggggctcaaccccaccgg 402
            ||||||||||||||||| ||| ||||||| ||||| || |||||||||||||| |||||
Sbjct: 260 gttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccgaccgg 319

                                            
Query: 403 cgacggcatgagcggcacccaggcgctcgtcgc 435
           || ||| |||  |||||| ||||||||||||||
Sbjct: 320 cggcgggatggccggcacgcaggcgctcgtcgc 352
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  180 bits (91), Expect = 3e-42
 Identities = 183/213 (85%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                            
Query: 226      gtgcacggcggagaggttctccaagaaccgcgtgtacgcggcctgcaccgacctgcctac 285
                |||| ||||||||||||||  ||  ||||||||||||||||| |||| |||||||||   
Sbjct: 26067259 gtgcgcggcggagaggttcagcagcaaccgcgtgtacgcggcgtgcagcgacctgcccca 26067200

                                                                            
Query: 286      cctgggcgcgtccgtgcactggacctacgacccggcggcgtcc---tccctctccgtggc 342
                ||||||||||||||||||||||||||||||| | ||||||||    || || ||||||||
Sbjct: 26067199 cctgggcgcgtccgtgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggc 26067140

                                                                            
Query: 343      cttcgtcgccgcgccgccctcggccggcggctgggtcgcctgggggctcaaccccaccgg 402
                 ||||||||||||||||| ||| ||||||| ||||| || |||||||||||||| |||||
Sbjct: 26067139 gttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccgaccgg 26067080

                                                 
Query: 403      cgacggcatgagcggcacccaggcgctcgtcgc 435
                || ||| |||  |||||| ||||||||||||||
Sbjct: 26067079 cggcgggatggccggcacgcaggcgctcgtcgc 26067047



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                            
Query: 365      gccggcggctgggtcgcctgggggctcaaccccaccggcgacggcatgagcggcacccag 424
                |||||||| ||||| || |||||||| |||||||||||||| || |||  ||| || |||
Sbjct: 26079612 gccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggccgggacgcag 26079671

                        
Query: 425      gcgctcgt 432
                ||||||||
Sbjct: 26079672 gcgctcgt 26079679



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 349      cgccgcgccgccctcggccg 368
                ||||||||||||||||||||
Sbjct: 21912324 cgccgcgccgccctcggccg 21912343
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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score =  180 bits (91), Expect = 3e-42
 Identities = 183/213 (85%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                         
Query: 226   gtgcacggcggagaggttctccaagaaccgcgtgtacgcggcctgcaccgacctgcctac 285
             |||| ||||||||||||||  ||  ||||||||||||||||| |||| |||||||||   
Sbjct: 11190 gtgcgcggcggagaggttcagcagcaaccgcgtgtacgcggcgtgcagcgacctgcccca 11131

                                                                         
Query: 286   cctgggcgcgtccgtgcactggacctacgacccggcggcgtcc---tccctctccgtggc 342
             ||||||||||||||||||||||||||||||| | ||||||||    || || ||||||||
Sbjct: 11130 cctgggcgcgtccgtgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggc 11071

                                                                         
Query: 343   cttcgtcgccgcgccgccctcggccggcggctgggtcgcctgggggctcaaccccaccgg 402
              ||||||||||||||||| ||| ||||||| ||||| || |||||||||||||| |||||
Sbjct: 11070 gttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccgaccgg 11011

                                              
Query: 403   cgacggcatgagcggcacccaggcgctcgtcgc 435
             || ||| |||  |||||| ||||||||||||||
Sbjct: 11010 cggcgggatggccggcacgcaggcgctcgtcgc 10978



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 365   gccggcggctgggtcgcctgggggctcaaccccaccggcgacggcatgagcggcacccag 424
             |||||||| ||||| || |||||||| |||||||||||||| || |||  ||| || |||
Sbjct: 23543 gccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggccgggacgcag 23602

                     
Query: 425   gcgctcgt 432
             ||||||||
Sbjct: 23603 gcgctcgt 23610
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>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1186_G01
          Length = 112077

 Score =  180 bits (91), Expect = 3e-42
 Identities = 183/213 (85%), Gaps = 3/213 (1%)
 Strand = Plus / Minus

                                                                          
Query: 226    gtgcacggcggagaggttctccaagaaccgcgtgtacgcggcctgcaccgacctgcctac 285
              |||| ||||||||||||||  ||  ||||||||||||||||| |||| |||||||||   
Sbjct: 102820 gtgcgcggcggagaggttcagcagcaaccgcgtgtacgcggcgtgcagcgacctgcccca 102761

                                                                          
Query: 286    cctgggcgcgtccgtgcactggacctacgacccggcggcgtcc---tccctctccgtggc 342
              ||||||||||||||||||||||||||||||| | ||||||||    || || ||||||||
Sbjct: 102760 cctgggcgcgtccgtgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggc 102701

                                                                          
Query: 343    cttcgtcgccgcgccgccctcggccggcggctgggtcgcctgggggctcaaccccaccgg 402
               ||||||||||||||||| ||| ||||||| ||||| || |||||||||||||| |||||
Sbjct: 102700 gttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccgaccgg 102641

                                               
Query: 403    cgacggcatgagcggcacccaggcgctcgtcgc 435
              || ||| |||  |||||| ||||||||||||||
Sbjct: 102640 cggcgggatggccggcacgcaggcgctcgtcgc 102608
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>dbj|AK058714.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D11, full
           insert sequence
          Length = 1418

 Score =  180 bits (91), Expect = 3e-42
 Identities = 183/213 (85%), Gaps = 3/213 (1%)
 Strand = Plus / Plus

                                                                       
Query: 226 gtgcacggcggagaggttctccaagaaccgcgtgtacgcggcctgcaccgacctgcctac 285
           |||| ||||||||||||||  ||  ||||||||||||||||| |||| |||||||||   
Sbjct: 140 gtgcgcggcggagaggttcagcagcaaccgcgtgtacgcggcgtgcagcgacctgcccca 199

                                                                       
Query: 286 cctgggcgcgtccgtgcactggacctacgacccggcggcgtcc---tccctctccgtggc 342
           ||||||||||||||||||||||||||||||| | ||||||||    || || ||||||||
Sbjct: 200 cctgggcgcgtccgtgcactggacctacgacgccgcggcgtcggcgtcgctgtccgtggc 259

                                                                       
Query: 343 cttcgtcgccgcgccgccctcggccggcggctgggtcgcctgggggctcaaccccaccgg 402
            ||||||||||||||||| ||| ||||||| ||||| || |||||||||||||| |||||
Sbjct: 260 gttcgtcgccgcgccgccgtcgcccggcgggtgggtggcgtgggggctcaacccgaccgg 319

                                            
Query: 403 cgacggcatgagcggcacccaggcgctcgtcgc 435
           || ||| |||  |||||| ||||||||||||||
Sbjct: 320 cggcgggatggccggcacgcaggcgctcgtcgc 352
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>gb|AC099404.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBa0019D02, complete sequence
          Length = 154692

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                             
Query: 390    tcaaccccaccggcgacggcatgagcggcacccaggcgctcgtcgcc 436
              ||||||||||||||||||||||||  ||| | |||||||||||||||
Sbjct: 150219 tcaaccccaccggcgacggcatgaagggcgcgcaggcgctcgtcgcc 150265



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                          
Query: 374    tgggtcgcctgggggctcaaccccaccggcgacggcatgagcggcacccaggcgctcgtc 433
              ||||| || ||||||||||||||  |||| ||||| |||  |||  | ||||||||||||
Sbjct: 140714 tgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctcgtc 140655

                  
Query: 434    gccg 437
              ||||
Sbjct: 140654 gccg 140651
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>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBb0004A05, complete sequence
          Length = 157913

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                            
Query: 390   tcaaccccaccggcgacggcatgagcggcacccaggcgctcgtcgcc 436
             ||||||||||||||||||||||||  ||| | |||||||||||||||
Sbjct: 34893 tcaaccccaccggcgacggcatgaagggcgcgcaggcgctcgtcgcc 34939



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                         
Query: 374   tgggtcgcctgggggctcaaccccaccggcgacggcatgagcggcacccaggcgctcgtc 433
             ||||| || ||||||||||||||  |||| ||||| |||  |||  | ||||||||||||
Sbjct: 25388 tgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctcgtc 25329

                 
Query: 434   gccg 437
             ||||
Sbjct: 25328 gccg 25325
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 390      tcaaccccaccggcgacggcatgagcggcacccaggcgctcgtcgcc 436
                ||||||||||||||||||||||||  ||| | |||||||||||||||
Sbjct: 19104934 tcaaccccaccggcgacggcatgaagggcgcgcaggcgctcgtcgcc 19104980



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 232      ggcggagaggttctccaaga 251
                ||||||||||||||||||||
Sbjct: 22054806 ggcggagaggttctccaaga 22054787



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                            
Query: 374      tgggtcgcctgggggctcaaccccaccggcgacggcatgagcggcacccaggcgctcgtc 433
                ||||| || ||||||||||||||  |||| ||||| |||  |||  | ||||||||||||
Sbjct: 19095428 tgggtggcgtgggggctcaacccggccggtgacgggatggccggggcgcaggcgctcgtc 19095369

                    
Query: 434      gccg 437
                ||||
Sbjct: 19095368 gccg 19095365
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>ref|XM_483413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 792

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                       
Query: 365 gccggcggctgggtcgcctgggggctcaaccccaccggcgacggcatgagcggcacccag 424
           |||||||| ||||| || |||||||| |||||||||||||| || |||  ||| || |||
Sbjct: 223 gccggcgggtgggtggcgtgggggctgaaccccaccggcgaggggatggccgggacgcag 282

                   
Query: 425 gcgctcgt 432
           ||||||||
Sbjct: 283 gcgctcgt 290
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>ref|XM_470580.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1155

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 369 gcggctgggtcgcctgggggctcaac 394
           |||||||||||||||||||| |||||
Sbjct: 209 gcggctgggtcgcctgggggatcaac 234
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 369     gcggctgggtcgcctgggggctcaac 394
               |||||||||||||||||||| |||||
Sbjct: 4892538 gcggctgggtcgcctgggggatcaac 4892563



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 349      cgccgcgccgccctcggccg 368
                ||||||||||||||||||||
Sbjct: 15819193 cgccgcgccgccctcggccg 15819212



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 363     cggccggcggctgggtcgcc 382
               ||||||||||||||||||||
Sbjct: 9140538 cggccggcggctgggtcgcc 9140519



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     cgccgcgccgccctcggccg 368
               ||||||||||||||||||||
Sbjct: 8131524 cgccgcgccgccctcggccg 8131505
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>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
              complete sequence
          Length = 159092

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 369    gcggctgggtcgcctgggggctcaac 394
              |||||||||||||||||||| |||||
Sbjct: 103009 gcggctgggtcgcctgggggatcaac 102984
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>gb|AC121789.2| Mus musculus BAC clone RP23-398C14 from 1, complete sequence
          Length = 181157

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 45    gaaagctctcctctttccccac 66
             ||||||||||||||||||||||
Sbjct: 53486 gaaagctctcctctttccccac 53465
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>gb|AC022867.10| Homo sapiens chromosome 8, clone RP11-367C12, complete sequence
          Length = 196931

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 45    gaaagctctcctctttccccac 66
             ||||||||||||||||||||||
Sbjct: 93698 gaaagctctcctctttccccac 93677
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>gb|AC016057.6| Homo sapiens chromosome 8, clone RP11-383H13, complete sequence
          Length = 197785

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 45    gaaagctctcctctttccccac 66
             ||||||||||||||||||||||
Sbjct: 23007 gaaagctctcctctttccccac 22986
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 369     gcggctgggtcgcctgggggctcaac 394
               |||||||||||||||||||| |||||
Sbjct: 4891753 gcggctgggtcgcctgggggatcaac 4891778



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 349      cgccgcgccgccctcggccg 368
                ||||||||||||||||||||
Sbjct: 15813727 cgccgcgccgccctcggccg 15813746



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 363     cggccggcggctgggtcgcc 382
               ||||||||||||||||||||
Sbjct: 9138371 cggccggcggctgggtcgcc 9138352



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 349     cgccgcgccgccctcggccg 368
               ||||||||||||||||||||
Sbjct: 8129359 cgccgcgccgccctcggccg 8129340
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>dbj|AK104413.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B05, full
           insert sequence
          Length = 1496

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 369 gcggctgggtcgcctgggggctcaac 394
           |||||||||||||||||||| |||||
Sbjct: 285 gcggctgggtcgcctgggggatcaac 310
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>dbj|AK104041.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-H11, full
           insert sequence
          Length = 1530

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 369 gcggctgggtcgcctgggggctcaac 394
           |||||||||||||||||||| |||||
Sbjct: 319 gcggctgggtcgcctgggggatcaac 344
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>dbj|AK070149.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042P18, full
           insert sequence
          Length = 1534

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 369 gcggctgggtcgcctgggggctcaac 394
           |||||||||||||||||||| |||||
Sbjct: 317 gcggctgggtcgcctgggggatcaac 342
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>dbj|AK061389.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-B12, full
           insert sequence
          Length = 1105

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 369 gcggctgggtcgcctgggggctcaac 394
           |||||||||||||||||||| |||||
Sbjct: 319 gcggctgggtcgcctgggggatcaac 344
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 344     ttcgtcgccgcgccgccctcg 364
               |||||||||||||||||||||
Sbjct: 2269511 ttcgtcgccgcgccgccctcg 2269531
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 363     cggccggcggctgggtcgcct 383
               |||||||||||||||||||||
Sbjct: 2832039 cggccggcggctgggtcgcct 2832019
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 350    gccgcgccgccctcggccggc 370
              |||||||||||||||||||||
Sbjct: 619011 gccgcgccgccctcggccggc 618991
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 395    cccaccggcgacggcatgagc 415
              |||||||||||||||||||||
Sbjct: 221415 cccaccggcgacggcatgagc 221395
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>ref|XM_467867.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 678

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 349 cgccgcgccgccctcggccg 368
           ||||||||||||||||||||
Sbjct: 549 cgccgcgccgccctcggccg 530
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>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0036C12, complete sequence
          Length = 145517

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cgccgcgccgccctcggccg 368
             ||||||||||||||||||||
Sbjct: 69174 cgccgcgccgccctcggccg 69193
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>gb|AC079853.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0004M10, complete sequence
          Length = 152423

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cgccgcgccgccctcggccg 368
             ||||||||||||||||||||
Sbjct: 80993 cgccgcgccgccctcggccg 81012
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     catgagcggcacccaggcgctcgt 432
               ||||||||||| ||||||||||||
Sbjct: 2689936 catgagcggcatccaggcgctcgt 2689959
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 151    cacgcgggttctcgccctgc 170
              ||||||||||||||||||||
Sbjct: 618409 cacgcgggttctcgccctgc 618428
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>ref|XM_423471.1| PREDICTED: Gallus gallus similar to Protocadherin beta 12 precursor
            (PCDH-beta12) (LOC425750), mRNA
          Length = 2204

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 349  cgccgcgccgccctcggccggcgg 372
            |||||||||||| |||||||||||
Sbjct: 1374 cgccgcgccgccgtcggccggcgg 1351
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 409   catgagcggcacccaggcgctcgt 432
             ||||||||||| ||||||||||||
Sbjct: 17455 catgagcggcatccaggcgctcgt 17478
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>ref|XM_744580.1| Aspergillus fumigatus Af293 uridine kinase (Afu2g05430) partial
           mRNA
          Length = 1362

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 99  actcctcggccccggagaagagat 122
           ||||||||||| ||||||||||||
Sbjct: 23  actcctcggccacggagaagagat 46
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>emb|BX119321.4| Human DNA sequence from clone RP5-908D6 on chromosome 1 Contains the 5'
             end of a novel pseudogene and a guanylate binding protein
             pseudogene, complete sequence
          Length = 68235

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    aagaaagctctcctctttcc 62
             ||||||||||||||||||||
Sbjct: 16905 aagaaagctctcctctttcc 16886
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>emb|AL390958.15| Human DNA sequence from clone RP11-271D19 on chromosome 9, complete
             sequence
          Length = 65791

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    tcctcccacctgaaccccca 95
             ||||||||||||||||||||
Sbjct: 24381 tcctcccacctgaaccccca 24362
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 348     tcgccgcgccgccctcggcc 367
               ||||||||||||||||||||
Sbjct: 1601158 tcgccgcgccgccctcggcc 1601177
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 408     gcatgagcggcacccaggcg 427
               ||||||||||||||||||||
Sbjct: 3605613 gcatgagcggcacccaggcg 3605632
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     catgagcggcacccaggcgctcgt 432
               ||||||||||| ||||||||||||
Sbjct: 3847722 catgagcggcatccaggcgctcgt 3847745
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>gb|AC150683.3| Mus musculus BAC clone RP23-435E16 from chromosome 7, complete sequence
          Length = 198646

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    agaaagctctcctctttccc 63
             ||||||||||||||||||||
Sbjct: 87224 agaaagctctcctctttccc 87243
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 390      tcaaccccaccggcgacggcatga 413
                |||||||||||||||||| |||||
Sbjct: 15360714 tcaaccccaccggcgacgacatga 15360691
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>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0016G06, complete sequence
          Length = 119910

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   cggccggcggctgggtcgcc 382
             ||||||||||||||||||||
Sbjct: 83718 cggccggcggctgggtcgcc 83699
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 349      cgccgcgccgccctcggccg 368
                ||||||||||||||||||||
Sbjct: 16745064 cgccgcgccgccctcggccg 16745083
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 349      cgccgcgccgccctcggccg 368
                ||||||||||||||||||||
Sbjct: 31817281 cgccgcgccgccctcggccg 31817262
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>gb|AC010900.12| Homo sapiens BAC clone RP11-544H14 from 2, complete sequence
          Length = 208024

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     tcctcccacctgaaccccca 95
              ||||||||||||||||||||
Sbjct: 143767 tcctcccacctgaaccccca 143786
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 349   cgccgcgccgccctcggccg 368
             ||||||||||||||||||||
Sbjct: 62954 cgccgcgccgccctcggccg 62935
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>gb|AE004474.1| Pseudomonas aeruginosa PAO1, section 35 of 529 of the complete genome
          Length = 10694

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 354  cgccgccctcggccggcggc 373
            ||||||||||||||||||||
Sbjct: 2146 cgccgccctcggccggcggc 2127
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 271     caccgacctgcctaccctgggcgc 294
               |||||||||||| |||||||||||
Sbjct: 1347909 caccgacctgcccaccctgggcgc 1347932
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 297     ccgtgcactggacctacgac 316
               ||||||||||||||||||||
Sbjct: 4468825 ccgtgcactggacctacgac 4468844
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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0635G10
          Length = 146728

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 232   ggcggagaggttctccaaga 251
             ||||||||||||||||||||
Sbjct: 96870 ggcggagaggttctccaaga 96851
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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    cgccgcgccgccctcggccg 368
              ||||||||||||||||||||
Sbjct: 113079 cgccgcgccgccctcggccg 113060
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>emb|AL844141.7| Zebrafish DNA sequence from clone DKEY-30K6, complete sequence
          Length = 257634

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    tttccccacccaccggtctc 77
             ||||||||||||||||||||
Sbjct: 66968 tttccccacccaccggtctc 66987
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>dbj|AP004558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0409A07
          Length = 146663

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 349    cgccgcgccgccctcggccg 368
              ||||||||||||||||||||
Sbjct: 112993 cgccgcgccgccctcggccg 113012
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>emb|X95407.1|RCDSTNORG R.capsulatus dimethyl sulfoxide/trimethylamine N-oxide Reductase gene
          Length = 2540

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 342  ccttcgtcgccgcgccgccctcgg 365
            ||||||||||||||||||| ||||
Sbjct: 1292 ccttcgtcgccgcgccgccatcgg 1269
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>dbj|AK110174.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-G09, full
            insert sequence
          Length = 3039

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 349  cgccgcgccgccctcggccg 368
            ||||||||||||||||||||
Sbjct: 1381 cgccgcgccgccctcggccg 1400
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>dbj|AK072397.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078P12, full
            insert sequence
          Length = 2210

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  cggccggcggctgggtcgcc 382
            ||||||||||||||||||||
Sbjct: 1653 cggccggcggctgggtcgcc 1672
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>dbj|AK060579.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F09, full
            insert sequence
          Length = 2006

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 363  cggccggcggctgggtcgcc 382
            ||||||||||||||||||||
Sbjct: 1573 cggccggcggctgggtcgcc 1592
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>gb|AY104997.1| Zea mays PCO079200 mRNA sequence
          Length = 593

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 126 ccgtccatccatccgccatg 145
           ||||||||||||||||||||
Sbjct: 36  ccgtccatccatccgccatg 55
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 409     catgagcggcacccaggcgctcgt 432
               ||||||||||| ||||||||||||
Sbjct: 3541619 catgagcggcatccaggcgctcgt 3541642
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 390      tcaaccccaccggcgacggcatga 413
                |||||||||||||||||| |||||
Sbjct: 15314997 tcaaccccaccggcgacgacatga 15314974
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>emb|AL713928.3|CNS07YP5 Oryza sativa chromosome 12, . BAC OSJNBa0036B12 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 151541

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 390    tcaaccccaccggcgacggcatga 413
              |||||||||||||||||| |||||
Sbjct: 136107 tcaaccccaccggcgacgacatga 136084
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>emb|AL928671.6| Zebrafish DNA sequence from clone CH211-39M14, complete sequence
          Length = 173481

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tttccccacccaccggtctc 77
             ||||||||||||||||||||
Sbjct: 99770 tttccccacccaccggtctc 99751
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>gb|L41887.1|HUMSFRS Homo sapiens splicing factor, arginine/serine-rich 7 (SFRS7) gene,
           complete cds
          Length = 8213

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 ccgccctcggccggcggctg 375
           ||||||||||||||||||||
Sbjct: 851 ccgccctcggccggcggctg 870
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>emb|AL355818.13| Human DNA sequence from clone RP4-667C9 on chromosome 1, complete
             sequence
          Length = 101854

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    aagaaagctctcctctttcc 62
             ||||||||||||||||||||
Sbjct: 93060 aagaaagctctcctctttcc 93079
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>gb|AY560757.1| Quamtana bonamanzi 28S ribosomal RNA gene, partial sequence
          Length = 1111

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 63  ccacccaccggtctcctccc 82
           ||||||||||||||||||||
Sbjct: 542 ccacccaccggtctcctccc 523
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>gb|AF210311.1| Streptomyces verticillus phosphopantetheinyl transferase PptA
           (pptA) gene, complete cds; and unknown genes
          Length = 1761

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 351 ccgcgccgccctcggccggc 370
           ||||||||||||||||||||
Sbjct: 403 ccgcgccgccctcggccggc 422


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,956,194
Number of Sequences: 3902068
Number of extensions: 2956194
Number of successful extensions: 64742
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62441
Number of HSP's gapped (non-prelim): 2301
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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