ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet90b12 |
|---|---|
| Clone Library Name | barley_pub |
>HWP1_CANAL (P46593) Hyphal wall protein 1 (Cell elongation protein 2)| Length = 634 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 123 DVPPQPNSPPDNVFRPDRPDKTGP 52 D PPQP+ P DN +PD+PD P Sbjct: 145 DNPPQPDIPCDNPPQPDQPDDNPP 168
>MMP15_MOUSE (O54732) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) Length = 657 Score = 30.8 bits (68), Expect = 0.84 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 Query: 117 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT 31 PP+P PP +P+RP K GP Q T Sbjct: 327 PPRPPQPPHPGGKPERPPKPGPPPQPRAT 355
>MMP15_HUMAN (P51511) Matrix metalloproteinase-15 precursor (EC 3.4.24.-)| (MMP-15) (Membrane-type matrix metalloproteinase 2) (MT-MMP 2) (MTMMP2) (Membrane-type-2 matrix metalloproteinase) (MT2-MMP) (MT2MMP) (SMCP-2) Length = 669 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -2 Query: 117 PPQPNSPPDNVFRPDRPDKTGPWSQKEGT 31 PP+P PP +P+RP K GP Q T Sbjct: 331 PPRPPQPPPPGGKPERPPKPGPPVQPRAT 359
>CLPB_DESVH (Q72AW6) Chaperone clpB| Length = 865 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/53 (33%), Positives = 28/53 (52%) Frame = -2 Query: 279 KITPKI*RIDRPRFHGRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYLLTD 121 K+ ++ R RP F R+ F P +P +I+ +VEL+LG LR L + Sbjct: 747 KVMEELRRHFRPEFLNRV----DETVLFKPLLPAQIARIVELLLGRLRGRLAE 795
>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant| protein) Length = 588 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%) Frame = +1 Query: 22 SGACPLLLAPRPGFIGPIRAEDIVRWGVWLGRHIC*KITQVS*DELNENRNL-VWNKRVK 198 S A P + P+P P+ +D+V V+LGR IC + D + + L W R+ Sbjct: 464 SSASPTGILPQP----PVNNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMN 519 Query: 199 A 201 + Sbjct: 520 S 520
>COL19_CAEEL (P18835) Cuticle collagen 19 precursor| Length = 289 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = -2 Query: 117 PPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDP 13 P P P ++P +P + GP + T PA +P Sbjct: 199 PAGPRGEPGTEYKPGQPGRPGPQGPRGETGPAGNP 233
>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1185 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -3 Query: 95 LTMSSARIGPIKPGLGAKRRGHAPLPTH 12 L S+A GP P GA+ H P+ TH Sbjct: 452 LANSNAHPGPFPPSTGAQSTAHPPVSTH 479
>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1186 Score = 28.5 bits (62), Expect = 4.1 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -3 Query: 95 LTMSSARIGPIKPGLGAKRRGHAPLPTH 12 L S+A GP P GA+ H P+ TH Sbjct: 451 LANSNAHPGPFPPSTGAQSTAHPPVSTH 478
>HIS1_THET8 (Q5SM15) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 206 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1 Query: 16 VGSGACPLLLAPRPGFIGPIR 78 +G GAC L L RPG GPIR Sbjct: 89 LGFGACRLSLIRRPGDTGPIR 109
>HIS1_THET2 (P62381) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)| (ATP-PRT) Length = 206 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1 Query: 16 VGSGACPLLLAPRPGFIGPIR 78 +G GAC L L RPG GPIR Sbjct: 89 LGFGACRLSLIRRPGDTGPIR 109
>FBXW7_DROME (Q9VZF4) F-box/WD-repeat protein 7 (F-box and WD-40 domain protein 7)| (Protein archipelago) Length = 1326 Score = 28.1 bits (61), Expect = 5.4 Identities = 9/26 (34%), Positives = 17/26 (65%) Frame = +1 Query: 178 VWNKRVKARLILISSTNTTVKAWPID 255 VW+ ++ +I+ ST+ T+K W +D Sbjct: 1038 VWSSQMSGNIIISGSTDRTLKVWDMD 1063
>IL6RA_PIG (O18796) Interleukin-6 receptor alpha chain precursor (IL-6R-alpha)| (IL-6R 1) (CD126 antigen) Length = 467 Score = 27.7 bits (60), Expect = 7.1 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Frame = -2 Query: 234 GRIRTGNQNQTSFYPFVPHEISVLVELILGHLRYL--LTDVPPQPNSPPDNVFRPDRPDK 61 G+++ + +T+ +P P+ + LV L L P PNS DN R RP+ Sbjct: 392 GQLQALKEGKTNMHP--PYSLGQLVPERPKSTPVLVPLISPPVSPNSLGDNTSRNSRPEA 449 Query: 60 TGPWS 46 GP S Sbjct: 450 RGPQS 454
>HSN2_RAT (Q6IFS7) Protein HSN2 precursor| Length = 434 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -2 Query: 153 ILGHLRYLLTDVPPQPNSPPDNVFRPDRPDKT 58 ++GHL+ L D P P SP ++ P+ D T Sbjct: 206 LVGHLQNLRLDSGPSPASPLSSISAPNSTDAT 237
>HSN2_MOUSE (Q6IFS6) Protein HSN2 precursor| Length = 433 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -2 Query: 153 ILGHLRYLLTDVPPQPNSPPDNVFRPDRPDKT 58 ++GHL+ L D P P SP ++ P+ D T Sbjct: 206 LVGHLQNLRLDSGPSPASPLSSISAPNSTDAT 237
>PBPB_BACSU (Q07868) Penicillin-binding protein 2B (PBP-2B)| Length = 716 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +3 Query: 168 QKSRVEQKGKSSFDSDFQYEYDRESVAY 251 QK+ ++ G+ S +F+YE+D+ S AY Sbjct: 396 QKTGIDLPGEVSSKINFKYEFDKASTAY 423
>LRP8_MOUSE (Q924X6) Low-density lipoprotein receptor-related protein 8| precursor (Apolipoprotein E receptor 2) Length = 996 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 47 LQGPVLSGRSGRKTLSGGEFGWGGTSVKR*RRCPKMSSTRTEISCGTK 190 L P +S S + T + + W G +KR R P+ +ST T S T+ Sbjct: 738 LPAPQISSHSPKYTCACPDTMWLGPDMKRCYRAPQSTSTTTLASAMTR 785
>GST1_ONCVO (P46434) Glutathione S-transferase 1 (EC 2.5.1.18) (Fragment)| Length = 235 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 2 YLFRGSEAGHVPSFWLQGPVLSGRSGRKTLSGGEFGWGGTS 124 YL + GHVP + G VL + L GG FG GT+ Sbjct: 75 YLKPRTPFGHVPMLNVSGNVLGESHAIELLLGGRFGLLGTN 115
>LRP8_HUMAN (Q14114) Low-density lipoprotein receptor-related protein 8| precursor (Apolipoprotein E receptor 2) Length = 963 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +2 Query: 47 LQGPVLSGRSGRKTLSGGEFGWGGTSVKR*RRCPKMSSTRTEISCGTK 190 L P +S S + T + + W G +KR R P+ +ST T S T+ Sbjct: 705 LPAPQISSHSPKYTCACPDTMWLGPDMKRCYRAPQSTSTTTLASTMTR 752
>ZFN1_ARATH (Q8GXX7) Zinc finger CCCH type domain-containing protein ZFN1| Length = 397 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%) Frame = -2 Query: 237 HGRIRTGNQNQTSF----YPFVPHEISVLVELILGHLRYLLTDVPPQPNSPPDNVFRPDR 70 H R + G + S YP +E+ L GH ++ T P P N+ P Sbjct: 110 HPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQPQPTNMMVPTS 169 Query: 69 PDKTGPWSQ 43 ++ PWS+ Sbjct: 170 GQQSYPWSR 178
>DMWD_MOUSE (Q08274) Dystrophia myotonica WD repeat-containing protein| (Dystrophia myotonica-containing WD repeat motif protein) (DMR-N9 protein) Length = 650 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/38 (34%), Positives = 13/38 (34%) Frame = -2 Query: 126 TDVPPQPNSPPDNVFRPDRPDKTGPWSQKEGTCPASDP 13 T PPQP PP P GP S P P Sbjct: 36 TPAPPQPTQPPPGPAAASGPGAAGPASSPPPAGPGPGP 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,884,011 Number of Sequences: 219361 Number of extensions: 982909 Number of successful extensions: 3259 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3081 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3254 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
