ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet81g09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding p... 56 3e-05
2gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds 48 0.008
3gb|BC091085.1| Xenopus tropicalis MGC108424 protein, mRNA (cDNA ... 44 0.12
4ref|NM_001030449.1| Xenopus tropicalis MGC108424 protein (MGC108... 44 0.12
5emb|AL353786.16| Human DNA sequence from clone RP5-1175B15 on ch... 44 0.12
6gb|AF261102.1|AF261102 Brassica rapa thioglucoside glucohydrolas... 44 0.12
7emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-5... 44 0.12
8dbj|AB079894.1| Sus scrofa gene for T-cell receptor beta-chain, ... 44 0.12
9emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein 42 0.48
10dbj|AB006081.1| Fagus crenata mRNA for chlorophyll a/b-binding p... 42 0.48
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.9
12emb|AL365506.10| Human DNA sequence from clone RP11-640E12 on ch... 40 1.9
13emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chr... 40 1.9
14emb|AL356464.15| Human DNA sequence from clone RP11-38O23 on chr... 40 1.9
15dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 1.9
16gb|AC073174.5| Homo sapiens chromosome 10 clone RP11-319F12, com... 40 1.9
17dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.9
18gb|AF339312.1|AF339312 Hepatitis C virus isolate HCP98 polyprote... 40 1.9
19gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033... 40 1.9
20dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 1.9
21emb|Z98304.1|HS54B20 Human DNA sequence from clone RP1-54B20 on ... 40 1.9
22gb|AC122382.4| Mus musculus BAC clone RP23-479D11 from 13, compl... 40 1.9
23gb|AY634220.1| Oikopleura dioica transposon LTR retrotransposon ... 38 7.4
24gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, com... 38 7.4
25gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 38 7.4
26ref|XM_591416.2| PREDICTED: Bos taurus hypothetical LOC513688 (L... 38 7.4
27gb|AC124386.4| Mus musculus BAC clone RP24-422C24 from chromosom... 38 7.4
28gb|AC101659.12| Mus musculus chromosome 7, clone RP23-202M11, co... 38 7.4
29gb|AC102692.6| Mus musculus chromosome 18, clone RP24-491K18, co... 38 7.4
30emb|BX323827.5| Human DNA sequence from clone RP4-732K23 on chro... 38 7.4
31emb|AL513364.10| Human DNA sequence from clone RP11-480N10 on ch... 38 7.4
32emb|AL357115.24| Human DNA sequence from clone RP11-102P23 on ch... 38 7.4
33emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chr... 38 7.4
34gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genom... 38 7.4
35gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosom... 38 7.4
36dbj|AK131654.1| Mus musculus adult male cerebellum cDNA, RIKEN f... 38 7.4
37gb|AY055726.2| Mus musculus synovial sarcoma associated SS18 (Ss... 38 7.4
38gb|AC139426.2| Homo sapiens chromosome 15, clone RP13-395E19, co... 38 7.4
39gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genom... 38 7.4
40gb|AC135731.6| Homo sapiens chromosome 15, clone RP11-261B23, co... 38 7.4
41gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, co... 38 7.4
42gb|AF256078.1|AF256078 Drosophila simulans strain sim8 cut prote... 38 7.4
43gb|AF256077.1|AF256077 Drosophila simulans strain sim7 cut prote... 38 7.4
44gb|AF256076.1|AF256076 Drosophila simulans strain sim5 cut prote... 38 7.4
45gb|AF256075.1|AF256075 Drosophila simulans strain sim4 cut prote... 38 7.4
46gb|AF256074.1|AF256074 Drosophila simulans strain sim3 cut prote... 38 7.4
47gb|AF256073.1|AF256073 Drosophila simulans strain sim2 cut prote... 38 7.4
48emb|BX511004.9| Zebrafish DNA sequence from clone RP71-45K5 in l... 38 7.4
49gb|AC130723.4| Mus musculus BAC clone RP24-409P7 from 8, complet... 38 7.4
50emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chr... 38 7.4
51emb|AL833797.6| Mouse DNA sequence from clone RP23-89B11 on chro... 38 7.4
52gb|AC165249.2| Mus musculus BAC clone RP24-157P13 from chromosom... 38 7.4 
>gb|U73218.1|TAU73218 Triticum aestivum chlorophyll a/b-binding protein WCAB precursor
           (Wcab) mRNA, complete cds
          Length = 918

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 85/104 (81%)
 Strand = Plus / Plus

                                                                       
Query: 52  caatggcggcaacgaccatgtccctctcttccccagcctttgccggcaaggtagtgaagg 111
           ||||||||||| | |||||||||||||| ||| |  |||||||||||||||  |||||| 
Sbjct: 8   caatggcggcagccaccatgtccctctcctcctcgacctttgccggcaaggcggtgaaga 67

                                                       
Query: 112 acttgccatcgtcgtctcttttcggggaggctcgcgtcaccatg 155
           |  | ||||| | | |||| || || ||||| ||||||||||||
Sbjct: 68  atgtaccatctttggctctcttgggcgaggcccgcgtcaccatg 111
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>gb|BC053854.1| Homo sapiens cDNA clone IMAGE:5194336, partial cds
          Length = 1044

 Score = 48.1 bits (24), Expect = 0.008
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 108 aaggacttgccatcgtcgtctcttttcggggaggctcgcgtcaccatg 155
           |||||| |||| |||||| | || ||||||||||| ||||||||||||
Sbjct: 118 aaggacctgccgtcgtcggcgctcttcggggaggcgcgcgtcaccatg 165
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>gb|BC091085.1| Xenopus tropicalis MGC108424 protein, mRNA (cDNA clone MGC:108424
            IMAGE:7024763), complete cds
          Length = 2592

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 7    attcttggagaacaaaatcagc 28
            ||||||||||||||||||||||
Sbjct: 1526 attcttggagaacaaaatcagc 1505
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>ref|NM_001030449.1| Xenopus tropicalis MGC108424 protein (MGC108424), mRNA
          Length = 2592

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 7    attcttggagaacaaaatcagc 28
            ||||||||||||||||||||||
Sbjct: 1526 attcttggagaacaaaatcagc 1505
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>emb|AL353786.16| Human DNA sequence from clone RP5-1175B15 on chromosome X Contains the
              gene for a protein similar to rat fertility related protein
              WMP1, the 3' end of the PTPN21 gene for protein tyrosine
              phosphatase non-receptor type 21 and CpG islands, complete
              sequence
          Length = 139565

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 69     atgtccctctcttccccagcct 90
              ||||||||||||||||||||||
Sbjct: 102165 atgtccctctcttccccagcct 102186
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>gb|AF261102.1|AF261102 Brassica rapa thioglucoside glucohydrolase 1 gene, partial cds
          Length = 793

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 7   attcttggagaacaaaatcagcatac 32
           ||||||||| ||||||||||||||||
Sbjct: 119 attcttggaaaacaaaatcagcatac 94
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>emb|AL162171.4|CNS01RHP Human chromosome 14 DNA sequence BAC R-507K2 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197550

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 69     atgtccctctcttccccagcct 90
              ||||||||||||||||||||||
Sbjct: 178932 atgtccctctcttccccagcct 178911
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>dbj|AB079894.1| Sus scrofa gene for T-cell receptor beta-chain, Dbeta-1 to 3' End Vbeta
             region
          Length = 34575

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 69    atgtccctctcttccccagcctttgc 94
             |||||||| |||||||||||||||||
Sbjct: 29286 atgtccctttcttccccagcctttgc 29261
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>emb|X89023.1|HVLHCIITI H.vulgare mRNA for LHC II type I protein
          Length = 934

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 127 ctcttttcggggaggctcgcgtcaccatg 155
           |||| ||||| ||||||||||||||||||
Sbjct: 92  ctctcttcggtgaggctcgcgtcaccatg 120
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>dbj|AB006081.1| Fagus crenata mRNA for chlorophyll a/b-binding protein, complete
           cds
          Length = 1010

 Score = 42.1 bits (21), Expect = 0.48
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                        
Query: 66  accatgtccctctcttccccagcctttgccggcaaggtagtgaag 110
           |||||| | |||||||||||| |  |||||||||||| |||||||
Sbjct: 60  accatggctctctcttccccatctcttgccggcaaggcagtgaag 104
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 42       ccatcgacaacaatggcggc 61
                ||||||||||||||||||||
Sbjct: 28525526 ccatcgacaacaatggcggc 28525545



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 39       cctccatcgacaacaatggcggc 61
                ||||||||||| |||||||||||
Sbjct: 34588168 cctccatcgacgacaatggcggc 34588146
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>emb|AL365506.10| Human DNA sequence from clone RP11-640E12 on chromosome 10, complete
             sequence
          Length = 81831

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   gtagtgaaggacttgccatc 121
             ||||||||||||||||||||
Sbjct: 81741 gtagtgaaggacttgccatc 81722
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>emb|AL355472.19| Human DNA sequence from clone RP5-827C21 on chromosome 1 Contains a
             ribosomal protein S15 (RPS15) pseudogene, three novel
             genes (LOC388753), the 3' end of the TARBP1 gene for TAR
             (HIV) RNA binding protein 1 and a CpG island, complete
             sequence
          Length = 92628

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    caaggtagtgaaggacttgc 117
             ||||||||||||||||||||
Sbjct: 11797 caaggtagtgaaggacttgc 11816
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>emb|AL356464.15| Human DNA sequence from clone RP11-38O23 on chromosome Xp11.23-11.4
             Contains the 3'end of the SSX6 gene for synovial sarcoma X
             breakpoint 6, a novel gene similar to lysozyme C
             (1,4-beta-N-acetylmuramidase), a zinc finger protein 21
             (ZNF21) pseudogene, an ornithine aminotransferase (gyrate
             atrophy) (OAT) pseudogene, a SSX2 pseudogene (psiSSX2), a
             S100 calcium binding protein A11 (calgizzarin)(S100A11)
             pseudogene, the 5'end of the SSX5 gene for synovial
             sarcoma X breakpoint 5 and one CpG island, complete
             sequence
          Length = 73851

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 66    accatgtccctctcttcccc 85
             ||||||||||||||||||||
Sbjct: 15180 accatgtccctctcttcccc 15199
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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 82      ccccagcctttgccggcaag 101
               ||||||||||||||||||||
Sbjct: 5609702 ccccagcctttgccggcaag 5609683
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>gb|AC073174.5| Homo sapiens chromosome 10 clone RP11-319F12, complete sequence
          Length = 161551

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    gtagtgaaggacttgccatc 121
              ||||||||||||||||||||
Sbjct: 159642 gtagtgaaggacttgccatc 159661
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 42       ccatcgacaacaatggcggc 61
                ||||||||||||||||||||
Sbjct: 28616850 ccatcgacaacaatggcggc 28616869



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 39       cctccatcgacaacaatggcggc 61
                ||||||||||| |||||||||||
Sbjct: 34678240 cctccatcgacgacaatggcggc 34678218
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>gb|AF339312.1|AF339312 Hepatitis C virus isolate HCP98 polyprotein gene, E2 protein PePHD
           region, partial cds
          Length = 333

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 93  gccggcaaggtagtgaagga 112
           ||||||||||||||||||||
Sbjct: 140 gccggcaaggtagtgaagga 121
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>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete
              sequence
          Length = 143681

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     ccatcgacaacaatggcggc 61
              ||||||||||||||||||||
Sbjct: 119656 ccatcgacaacaatggcggc 119675
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 46      cgacaacaatggcggcaacg 65
               ||||||||||||||||||||
Sbjct: 3533888 cgacaacaatggcggcaacg 3533869
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>emb|Z98304.1|HS54B20 Human DNA sequence from clone RP1-54B20 on chromosome Xp11.1-11.3
              Contains the 5' end of the SSX6 gene for synovial sarcoma X
              breakpoint 6, two novel genes similar to a C2H2 type zinc
              finger protein, a novel gene, a novel gene similar to
              lysozyme C (1,4-beta-N-acetylmuramidase), the ZNF81 gene
              for zinc finger protein 81 (HFZ20) and three CpG islands,
              complete sequence
          Length = 209618

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 66     accatgtccctctcttcccc 85
              ||||||||||||||||||||
Sbjct: 107790 accatgtccctctcttcccc 107771
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>gb|AC122382.4| Mus musculus BAC clone RP23-479D11 from 13, complete sequence
          Length = 190429

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    aatcagcatacacaagacct 41
             ||||||||||||||||||||
Sbjct: 90029 aatcagcatacacaagacct 90010
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>gb|AY634220.1| Oikopleura dioica transposon LTR retrotransposon Tor4a, partial
           sequence
          Length = 6823

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 45  tcgacaacaatggcggcaacgac 67
           |||||||| ||||||||||||||
Sbjct: 589 tcgacaacgatggcggcaacgac 611
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>gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, complete sequence
          Length = 198759

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 74    cctctcttccccagccttt 92
             |||||||||||||||||||
Sbjct: 69473 cctctcttccccagccttt 69455
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 36      agacctccatcgacaacaa 54
               |||||||||||||||||||
Sbjct: 2187787 agacctccatcgacaacaa 2187769
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>ref|XM_591416.2| PREDICTED: Bos taurus hypothetical LOC513688 (LOC513688), mRNA
          Length = 2194

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                       
Query: 88   cctttgccggcaaggtagtgaaggact 114
            ||||||| |||||| ||||||||||||
Sbjct: 1315 cctttgctggcaagttagtgaaggact 1289
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>gb|AC124386.4| Mus musculus BAC clone RP24-422C24 from chromosome 1, complete sequence
          Length = 146080

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    ccatgtccctctcttcccc 85
             |||||||||||||||||||
Sbjct: 45419 ccatgtccctctcttcccc 45401
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>gb|AC101659.12| Mus musculus chromosome 7, clone RP23-202M11, complete sequence
          Length = 244819

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     acaaaatcagcatacacaa 36
              |||||||||||||||||||
Sbjct: 228613 acaaaatcagcatacacaa 228595
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>gb|AC102692.6| Mus musculus chromosome 18, clone RP24-491K18, complete sequence
          Length = 225042

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 70     tgtccctctcttccccagc 88
              |||||||||||||||||||
Sbjct: 161686 tgtccctctcttccccagc 161704
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>emb|BX323827.5| Human DNA sequence from clone RP4-732K23 on chromosome X, complete
             sequence
          Length = 57941

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    acaaaatcagcatacacaa 36
             |||||||||||||||||||
Sbjct: 45019 acaaaatcagcatacacaa 45001
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>emb|AL513364.10| Human DNA sequence from clone RP11-480N10 on chromosome 1, complete
            sequence
          Length = 74951

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   acaaaatcagcatacacaa 36
            |||||||||||||||||||
Sbjct: 1224 acaaaatcagcatacacaa 1242
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>emb|AL357115.24| Human DNA sequence from clone RP11-102P23 on chromosome Xq13.3-21.1
             Contains the 5' end of the NSBP1 gene for nucleosomal
             binding protein 1 and the SH3BGRL gene for SH3 domain
             binding glutamic acid-rich protein like, complete sequence
          Length = 164012

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    acaaaatcagcatacacaa 36
             |||||||||||||||||||
Sbjct: 82042 acaaaatcagcatacacaa 82024
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>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a
           nicotinamide nucleotide adenylyltransferase 1 (NMNAT1)
           pseudogene and a high-mobility group box 3 (HMGB3)
           pseudogene, complete sequence
          Length = 184024

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 18  acaaaatcagcatacacaa 36
           |||||||||||||||||||
Sbjct: 777 acaaaatcagcatacacaa 759
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>gb|AC133339.3| Oryza sativa chromosome 3 BAC OSJNBa0078D06 genomic sequence, complete
             sequence
          Length = 164236

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 39    cctccatcgacaacaatggcggc 61
             ||||||||||| |||||||||||
Sbjct: 45885 cctccatcgacgacaatggcggc 45863
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>gb|AC162904.4| Mus musculus BAC clone RP24-152H15 from chromosome 1, complete sequence
          Length = 147442

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     ccatgtccctctcttcccc 85
              |||||||||||||||||||
Sbjct: 140898 ccatgtccctctcttcccc 140880
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>dbj|AK131654.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched
            library, clone:1520403K13 product:unclassifiable, full
            insert sequence
          Length = 3812

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 2    tcctcattcttggagaaca 20
            |||||||||||||||||||
Sbjct: 1926 tcctcattcttggagaaca 1944
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>gb|AY055726.2| Mus musculus synovial sarcoma associated SS18 (Ss18) gene, complete
             cds, alternatively spliced
          Length = 64533

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    tgtccctctcttccccagc 88
             |||||||||||||||||||
Sbjct: 38790 tgtccctctcttccccagc 38808
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>gb|AC139426.2| Homo sapiens chromosome 15, clone RP13-395E19, complete sequence
          Length = 188448

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     acaaaatcagcatacacaa 36
              |||||||||||||||||||
Sbjct: 105713 acaaaatcagcatacacaa 105731
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>gb|AC133778.4| Oryza sativa chromosome 3 BAC OSJNBb0027B08 genomic sequence, complete
             sequence
          Length = 129302

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 39    cctccatcgacaacaatggcggc 61
             ||||||||||| |||||||||||
Sbjct: 55165 cctccatcgacgacaatggcggc 55187
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>gb|AC135731.6| Homo sapiens chromosome 15, clone RP11-261B23, complete sequence
          Length = 123089

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    acaaaatcagcatacacaa 36
             |||||||||||||||||||
Sbjct: 87508 acaaaatcagcatacacaa 87490
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>gb|AC021413.16| Homo sapiens chromosome 15, clone RP11-30N16, complete sequence
          Length = 199198

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 18     acaaaatcagcatacacaa 36
              |||||||||||||||||||
Sbjct: 170265 acaaaatcagcatacacaa 170247
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>gb|AF256078.1|AF256078 Drosophila simulans strain sim8 cut protein (ct) gene, partial cds
          Length = 1090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  acaacaatggcggcaacga 66
           |||||||||||||||||||
Sbjct: 859 acaacaatggcggcaacga 877
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>gb|AF256077.1|AF256077 Drosophila simulans strain sim7 cut protein (ct) gene, partial cds
          Length = 1090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  acaacaatggcggcaacga 66
           |||||||||||||||||||
Sbjct: 859 acaacaatggcggcaacga 877
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>gb|AF256076.1|AF256076 Drosophila simulans strain sim5 cut protein (ct) gene, partial cds
          Length = 1090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  acaacaatggcggcaacga 66
           |||||||||||||||||||
Sbjct: 859 acaacaatggcggcaacga 877
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>gb|AF256075.1|AF256075 Drosophila simulans strain sim4 cut protein (ct) gene, partial cds
          Length = 1090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  acaacaatggcggcaacga 66
           |||||||||||||||||||
Sbjct: 859 acaacaatggcggcaacga 877
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>gb|AF256074.1|AF256074 Drosophila simulans strain sim3 cut protein (ct) gene, partial cds
          Length = 1090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  acaacaatggcggcaacga 66
           |||||||||||||||||||
Sbjct: 859 acaacaatggcggcaacga 877
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>gb|AF256073.1|AF256073 Drosophila simulans strain sim2 cut protein (ct) gene, partial cds
          Length = 1090

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 48  acaacaatggcggcaacga 66
           |||||||||||||||||||
Sbjct: 859 acaacaatggcggcaacga 877
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>emb|BX511004.9| Zebrafish DNA sequence from clone RP71-45K5 in linkage group 19, complete
              sequence
          Length = 168626

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 39     cctccatcgacaacaatgg 57
              |||||||||||||||||||
Sbjct: 143076 cctccatcgacaacaatgg 143094
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>gb|AC130723.4| Mus musculus BAC clone RP24-409P7 from 8, complete sequence
          Length = 197951

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 71     gtccctctcttccccagcc 89
              |||||||||||||||||||
Sbjct: 103997 gtccctctcttccccagcc 104015
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>emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chromosome 2, complete
             sequence
          Length = 105895

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    aaatcagcatacacaagac 39
             |||||||||||||||||||
Sbjct: 34028 aaatcagcatacacaagac 34046
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>emb|AL833797.6| Mouse DNA sequence from clone RP23-89B11 on chromosome 2, complete
             sequence
          Length = 165400

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     tcttggagaacaaaatcag 27
             |||||||||||||||||||
Sbjct: 98208 tcttggagaacaaaatcag 98226
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>gb|AC165249.2| Mus musculus BAC clone RP24-157P13 from chromosome 12, complete sequence
          Length = 193902

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      tcctcattcttggagaaca 20
              |||||||||||||||||||
Sbjct: 131440 tcctcattcttggagaaca 131458


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,237,504
Number of Sequences: 3902068
Number of extensions: 1237504
Number of successful extensions: 90807
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90490
Number of HSP's gapped (non-prelim): 316
length of query: 155
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 133
effective length of database: 17,147,199,772
effective search space: 2280577569676
effective search space used: 2280577569676
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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